data_2C8F
#
_model_server_result.job_id            wYXSxlydWS8QCCT4Ac0R8w 
_model_server_result.datetime_utc      '2024-11-25 15:26:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2c8f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1247}' 
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_entry.id    2C8F 
#
_exptl.entry_id    2C8F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          97.28 
_cell.angle_gamma         90 
_cell.entry_id            2C8F 
_cell.length_a            44.837 
_cell.length_b            70.381 
_cell.length_c            114.688 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2C8F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E 1 1 
B,F 2 1 
C,G 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 224 n n 
PA O2A NAD sing 225 n n 
PA O5B NAD sing 226 n n 
PA O3 NAD sing 227 n n 
O2A HOA2 NAD sing 228 n n 
O5B C5B NAD sing 229 n n 
C5B C4B NAD sing 230 n n 
C5B H51A NAD sing 231 n n 
C5B H52A NAD sing 232 n n 
C4B O4B NAD sing 233 n n 
C4B C3B NAD sing 234 n n 
C4B H4B NAD sing 235 n n 
O4B C1B NAD sing 236 n n 
C3B O3B NAD sing 237 n n 
C3B C2B NAD sing 238 n n 
C3B H3B NAD sing 239 n n 
O3B HO3A NAD sing 240 n n 
C2B O2B NAD sing 241 n n 
C2B C1B NAD sing 242 n n 
C2B H2B NAD sing 243 n n 
O2B HO2A NAD sing 244 n n 
C1B N9A NAD sing 245 n n 
C1B H1B NAD sing 246 n n 
N9A C8A NAD sing 247 n y 
N9A C4A NAD sing 248 n y 
C8A N7A NAD doub 249 n y 
C8A H8A NAD sing 250 n n 
N7A C5A NAD sing 251 n y 
C5A C6A NAD sing 252 n y 
C5A C4A NAD doub 253 n y 
C6A N6A NAD sing 254 n n 
C6A N1A NAD doub 255 n y 
N6A H61A NAD sing 256 n n 
N6A H62A NAD sing 257 n n 
N1A C2A NAD sing 258 n y 
C2A N3A NAD doub 259 n y 
C2A H2A NAD sing 260 n n 
N3A C4A NAD sing 261 n y 
O3 PN NAD sing 262 n n 
PN O1N NAD doub 263 n n 
PN O2N NAD sing 264 n n 
PN O5D NAD sing 265 n n 
O5D C5D NAD sing 266 n n 
C5D C4D NAD sing 267 n n 
C5D H51N NAD sing 268 n n 
C5D H52N NAD sing 269 n n 
C4D O4D NAD sing 270 n n 
C4D C3D NAD sing 271 n n 
C4D H4D NAD sing 272 n n 
O4D C1D NAD sing 273 n n 
C3D O3D NAD sing 274 n n 
C3D C2D NAD sing 275 n n 
C3D H3D NAD sing 276 n n 
O3D HO3N NAD sing 277 n n 
C2D O2D NAD sing 278 n n 
C2D C1D NAD sing 279 n n 
C2D H2D NAD sing 280 n n 
O2D HO2N NAD sing 281 n n 
C1D N1N NAD sing 282 n n 
C1D H1D NAD sing 283 n n 
N1N C2N NAD sing 284 n y 
N1N C6N NAD doub 285 n y 
C2N C3N NAD doub 286 n y 
C2N H2N NAD sing 287 n n 
C3N C7N NAD sing 288 n n 
C3N C4N NAD sing 289 n y 
C7N O7N NAD doub 290 n n 
C7N N7N NAD sing 291 n n 
N7N H71N NAD sing 292 n n 
N7N H72N NAD sing 293 n n 
C4N C5N NAD doub 294 n y 
C4N H4N NAD sing 295 n n 
C5N C6N NAD sing 296 n y 
C5N H5N NAD sing 297 n n 
C6N H6N NAD sing 298 n n 
#
_atom_sites.entry_id                     2C8F 
_atom_sites.fract_transf_matrix[1][1]    0.022303 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002849 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014208 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00879 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 NAD E 1 1247 1247 NAD NAD . 
E 3 HOH E 1 2001 2001 HOH HOH . 
E 3 HOH E 2 2002 2002 HOH HOH . 
E 3 HOH E 3 2003 2003 HOH HOH . 
E 3 HOH E 4 2004 2004 HOH HOH . 
E 3 HOH E 5 2005 2005 HOH HOH . 
E 3 HOH E 6 2006 2006 HOH HOH . 
E 3 HOH E 7 2007 2007 HOH HOH . 
E 3 HOH E 8 2008 2008 HOH HOH . 
E 3 HOH E 9 2009 2009 HOH HOH . 
E 3 HOH E 10 2010 2010 HOH HOH . 
E 3 HOH E 11 2011 2011 HOH HOH . 
E 3 HOH E 12 2012 2012 HOH HOH . 
E 3 HOH E 13 2013 2013 HOH HOH . 
E 3 HOH E 14 2014 2014 HOH HOH . 
E 3 HOH E 15 2015 2015 HOH HOH . 
E 3 HOH E 16 2016 2016 HOH HOH . 
E 3 HOH E 17 2017 2017 HOH HOH . 
E 3 HOH E 18 2018 2018 HOH HOH . 
E 3 HOH E 19 2019 2019 HOH HOH . 
F 3 HOH F 1 2001 2001 HOH HOH . 
F 3 HOH F 2 2002 2002 HOH HOH . 
F 3 HOH F 3 2003 2003 HOH HOH . 
F 3 HOH F 4 2004 2004 HOH HOH . 
F 3 HOH F 5 2005 2005 HOH HOH . 
F 3 HOH F 6 2006 2006 HOH HOH . 
G 3 HOH G 1 2001 2001 HOH HOH . 
G 3 HOH G 2 2002 2002 HOH HOH . 
G 3 HOH G 3 2003 2003 HOH HOH . 
G 3 HOH G 4 2004 2004 HOH HOH . 
G 3 HOH G 5 2005 2005 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . D 2 41.871 2.499 73.018 1 49.06 ? PA NAD 1247 E 1 
HETATM 2 O O1A NAD . . . D 2 40.495 2.075 72.63 1 48.26 ? O1A NAD 1247 E 1 
HETATM 3 O O2A NAD . . . D 2 42.64 1.393 73.756 1 47.6 ? O2A NAD 1247 E 1 
HETATM 4 O O5B NAD . . . D 2 42.646 2.87 71.645 1 48.25 ? O5B NAD 1247 E 1 
HETATM 5 C C5B NAD . . . D 2 43.849 3.637 71.652 1 48.94 ? C5B NAD 1247 E 1 
HETATM 6 C C4B NAD . . . D 2 44.098 4.336 70.317 1 47.19 ? C4B NAD 1247 E 1 
HETATM 7 O O4B NAD . . . D 2 44.273 3.31 69.372 1 48.73 ? O4B NAD 1247 E 1 
HETATM 8 C C3B NAD . . . D 2 42.911 5.168 69.807 1 47.14 ? C3B NAD 1247 E 1 
HETATM 9 O O3B NAD . . . D 2 43.297 6.351 69.141 1 48.58 ? O3B NAD 1247 E 1 
HETATM 10 C C2B NAD . . . D 2 42.219 4.286 68.804 1 45.43 ? C2B NAD 1247 E 1 
HETATM 11 O O2B NAD . . . D 2 41.66 5.021 67.767 1 44.01 ? O2B NAD 1247 E 1 
HETATM 12 C C1B NAD . . . D 2 43.34 3.396 68.307 1 45.13 ? C1B NAD 1247 E 1 
HETATM 13 N N9A NAD . . . D 2 42.892 2.054 67.95 1 43.49 ? N9A NAD 1247 E 1 
HETATM 14 C C8A NAD . . . D 2 41.754 1.395 68.335 1 44.09 ? C8A NAD 1247 E 1 
HETATM 15 N N7A NAD . . . D 2 41.74 0.19 67.737 1 43.93 ? N7A NAD 1247 E 1 
HETATM 16 C C5A NAD . . . D 2 42.835 0.067 66.996 1 43.67 ? C5A NAD 1247 E 1 
HETATM 17 C C6A NAD . . . D 2 43.287 -0.955 66.207 1 45.32 ? C6A NAD 1247 E 1 
HETATM 18 N N6A NAD . . . D 2 42.595 -2.078 66.098 1 45.62 ? N6A NAD 1247 E 1 
HETATM 19 N N1A NAD . . . D 2 44.483 -0.789 65.542 1 48.9 ? N1A NAD 1247 E 1 
HETATM 20 C C2A NAD . . . D 2 45.209 0.388 65.65 1 48.03 ? C2A NAD 1247 E 1 
HETATM 21 N N3A NAD . . . D 2 44.744 1.406 66.455 1 46.69 ? N3A NAD 1247 E 1 
HETATM 22 C C4A NAD . . . D 2 43.576 1.233 67.122 1 44.51 ? C4A NAD 1247 E 1 
HETATM 23 O O3 NAD . . . D 2 41.785 3.777 74.037 1 49.75 ? O3 NAD 1247 E 1 
HETATM 24 P PN NAD . . . D 2 40.801 5.068 73.886 1 47.53 ? PN NAD 1247 E 1 
HETATM 25 O O1N NAD . . . D 2 39.443 4.549 73.818 1 51.83 ? O1N NAD 1247 E 1 
HETATM 26 O O2N NAD . . . D 2 41.36 5.947 72.858 1 47.4 ? O2N NAD 1247 E 1 
HETATM 27 O O5D NAD . . . D 2 40.765 5.921 75.222 1 47.85 ? O5D NAD 1247 E 1 
HETATM 28 C C5D NAD . . . D 2 40.864 5.261 76.465 1 49.38 ? C5D NAD 1247 E 1 
HETATM 29 C C4D NAD . . . D 2 40.804 6.314 77.581 1 49.06 ? C4D NAD 1247 E 1 
HETATM 30 O O4D NAD . . . D 2 39.798 7.247 77.265 1 48.67 ? O4D NAD 1247 E 1 
HETATM 31 C C3D NAD . . . D 2 40.358 5.794 78.931 1 49.48 ? C3D NAD 1247 E 1 
HETATM 32 O O3D NAD . . . D 2 40.69 6.799 79.876 1 50.43 ? O3D NAD 1247 E 1 
HETATM 33 C C2D NAD . . . D 2 38.854 5.664 78.768 1 48.06 ? C2D NAD 1247 E 1 
HETATM 34 O O2D NAD . . . D 2 38.141 5.671 79.98 1 48.99 ? O2D NAD 1247 E 1 
HETATM 35 C C1D NAD . . . D 2 38.602 6.94 78.009 1 47.87 ? C1D NAD 1247 E 1 
HETATM 36 N N1N NAD . . . D 2 37.394 6.936 77.154 1 47.64 ? N1N NAD 1247 E 1 
HETATM 37 C C2N NAD . . . D 2 37.514 7.007 75.781 1 46.79 ? C2N NAD 1247 E 1 
HETATM 38 C C3N NAD . . . D 2 36.383 7.045 74.975 1 48.8 ? C3N NAD 1247 E 1 
HETATM 39 C C7N NAD . . . D 2 36.485 7.112 73.48 1 49.27 ? C7N NAD 1247 E 1 
HETATM 40 O O7N NAD . . . D 2 35.298 7.167 72.801 1 50.76 ? O7N NAD 1247 E 1 
HETATM 41 N N7N NAD . . . D 2 37.613 7.124 72.791 1 50.03 ? N7N NAD 1247 E 1 
HETATM 42 C C4N NAD . . . D 2 35.114 7.015 75.573 1 48.12 ? C4N NAD 1247 E 1 
HETATM 43 C C5N NAD . . . D 2 35.013 6.952 76.968 1 48.37 ? C5N NAD 1247 E 1 
HETATM 44 C C6N NAD . . . D 2 36.166 6.924 77.754 1 47.45 ? C6N NAD 1247 E 1 
#
_model_server_stats.io_time_ms              69 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           257 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           44 
#