data_2C8K # _model_server_result.job_id 0ssqfGsF6BcEZHNULry4HQ _model_server_result.datetime_utc '2024-11-23 20:07:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2c8k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1995}' # _entry.id 2C8K # _exptl.entry_id 2C8K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 650.754 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OCTANOIC ACID [3S-[3ALPHA,3ABETA,4ALPHA,6BETA,6ABETA,7BETA,8ALPHA(Z),9BALPHA]]-6-(ACETYLOXY)-2,3,-3A,4,5,6,6A,7,8,9B-DECAHYDRO-3,3A-DIHYDROXY-3,6,9-TRIMETHYL-8-[(2-METHYL-1-OXO-2-BUTENYL)OX Y]-2-OXO-4-(1-OXOBUTOXY)-AZULENO[4,5-B]FURAN-7-YL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2C8K _cell.length_a 71.34 _cell.length_b 71.34 _cell.length_c 587.99 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2C8K _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 876 A CYS 876 1_555 A SG CYS 888 A CYS 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A O ALA 714 A ALA 714 1_555 E NA NA . A NA 1998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc2 A OE2 GLU 732 A GLU 732 1_555 E NA NA . A NA 1998 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc3 C O1A ACP . A ACP 1996 1_555 D MG MG . A MG 1997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc4 C O2B ACP . A ACP 1996 1_555 D MG MG . A MG 1997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? # _chem_comp.formula 'C34 H50 O12' _chem_comp.formula_weight 650.754 _chem_comp.id TG1 _chem_comp.mon_nstd_flag . _chem_comp.name 'OCTANOIC ACID [3S-[3ALPHA, 3ABETA, 4ALPHA, 6BETA, 6ABETA, 7BETA, 8ALPHA(Z), 9BALPHA]]-6-(ACETYLOXY)-2,3,-3A,4,5,6,6A,7,8,9B-DECAHYDRO-3,3A-DIHYDROXY-3,6,9-TRIMETHYL-8-[(2-METHYL-1-OXO-2-BUTENYL)OX Y]-2-OXO-4-(1-OXOBUTOXY)-AZULENO[4,5-B]FURAN-7-YL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms THAPSIGARGIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C34 C11 TG1 sing 339 n n C34 H341 TG1 sing 340 n n C34 H342 TG1 sing 341 n n C34 H343 TG1 sing 342 n n C11 C7 TG1 sing 343 n n C11 C12 TG1 sing 344 n n C11 O11 TG1 sing 345 n n C7 C8 TG1 sing 346 n n C7 C6 TG1 sing 347 n n C7 O6 TG1 sing 348 n n C8 C9 TG1 sing 349 n n C8 O7 TG1 sing 350 n n C8 HC8 TG1 sing 351 n n C9 C10 TG1 sing 352 n n C9 HC91 TG1 sing 353 n n C9 HC92 TG1 sing 354 n n C10 C1 TG1 sing 355 n n C10 C31 TG1 sing 356 n n C10 O9 TG1 sing 357 n n C1 C2 TG1 sing 358 n n C1 C5 TG1 sing 359 n n C1 HC1 TG1 sing 360 n n C2 O1 TG1 sing 361 n n C2 C3 TG1 sing 362 n n C2 HC2 TG1 sing 363 n n O1 C13 TG1 sing 364 n n C13 O2 TG1 doub 365 n n C13 C14 TG1 sing 366 n n C14 C15 TG1 sing 367 n n C14 H141 TG1 sing 368 n n C14 H142 TG1 sing 369 n n C15 C16 TG1 sing 370 n n C15 H151 TG1 sing 371 n n C15 H152 TG1 sing 372 n n C16 C17 TG1 sing 373 n n C16 H161 TG1 sing 374 n n C16 H162 TG1 sing 375 n n C17 C18 TG1 sing 376 n n C17 H171 TG1 sing 377 n n C17 H172 TG1 sing 378 n n C18 C19 TG1 sing 379 n n C18 H181 TG1 sing 380 n n C18 H182 TG1 sing 381 n n C19 C20 TG1 sing 382 n n C19 H191 TG1 sing 383 n n C19 H192 TG1 sing 384 n n C20 H201 TG1 sing 385 n n C20 H202 TG1 sing 386 n n C20 H203 TG1 sing 387 n n C3 O3 TG1 sing 388 n n C3 C4 TG1 sing 389 n n C3 HC3 TG1 sing 390 n n O3 C21 TG1 sing 391 n n C21 O4 TG1 doub 392 n n C21 C22 TG1 sing 393 n n C22 C23 TG1 sing 394 n n C22 C24 TG1 doub 395 z n C23 H231 TG1 sing 396 n n C23 H232 TG1 sing 397 n n C23 H233 TG1 sing 398 n n C24 C25 TG1 sing 399 n n C24 H24 TG1 sing 400 n n C25 H251 TG1 sing 401 n n C25 H252 TG1 sing 402 n n C25 H253 TG1 sing 403 n n C4 C26 TG1 sing 404 n n C4 C5 TG1 doub 405 n n C26 H261 TG1 sing 406 n n C26 H262 TG1 sing 407 n n C26 H263 TG1 sing 408 n n C5 C6 TG1 sing 409 n n C6 O5 TG1 sing 410 n n C6 HC6 TG1 sing 411 n n O5 C12 TG1 sing 412 n n C12 O12 TG1 doub 413 n n C31 H311 TG1 sing 414 n n C31 H312 TG1 sing 415 n n C31 H313 TG1 sing 416 n n O9 C32 TG1 sing 417 n n C32 O10 TG1 doub 418 n n C32 C33 TG1 sing 419 n n C33 H331 TG1 sing 420 n n C33 H332 TG1 sing 421 n n C33 H333 TG1 sing 422 n n O7 C27 TG1 sing 423 n n C27 O8 TG1 doub 424 n n C27 C28 TG1 sing 425 n n C28 C29 TG1 sing 426 n n C28 H281 TG1 sing 427 n n C28 H282 TG1 sing 428 n n C29 C30 TG1 sing 429 n n C29 H291 TG1 sing 430 n n C29 H292 TG1 sing 431 n n C30 H301 TG1 sing 432 n n C30 H302 TG1 sing 433 n n C30 H303 TG1 sing 434 n n O6 HO6 TG1 sing 435 n n O11 HO11 TG1 sing 436 n n # _atom_sites.entry_id 2C8K _atom_sites.fract_transf_matrix[1][1] 0.014017 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014017 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001701 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TG1 A 1 1995 1995 TG1 TG1 . C 3 ACP A 1 1996 1996 ACP ACP . D 4 MG A 1 1997 1997 MG MG . E 5 NA A 1 1998 1998 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C34 TG1 . . . B 2 -4.344 10.304 90.239 1 81.02 ? C34 TG1 1995 A 1 HETATM 2 C C11 TG1 . . . B 2 -3.573 10.52 88.885 1 79.65 ? C11 TG1 1995 A 1 HETATM 3 C C7 TG1 . . . B 2 -4.507 10.359 87.62 1 76.29 ? C7 TG1 1995 A 1 HETATM 4 C C8 TG1 . . . B 2 -5.563 11.522 87.385 1 72.4 ? C8 TG1 1995 A 1 HETATM 5 C C9 TG1 . . . B 2 -6.482 11.403 86.15 1 69.48 ? C9 TG1 1995 A 1 HETATM 6 C C10 TG1 . . . B 2 -5.925 11.095 84.712 1 70.26 ? C10 TG1 1995 A 1 HETATM 7 C C1 TG1 . . . B 2 -5.004 9.789 84.451 1 72.47 ? C1 TG1 1995 A 1 HETATM 8 C C2 TG1 . . . B 2 -4.746 9.509 82.921 1 74.48 ? C2 TG1 1995 A 1 HETATM 9 O O1 TG1 . . . B 2 -5.284 8.229 82.468 1 77.32 ? O1 TG1 1995 A 1 HETATM 10 C C13 TG1 . . . B 2 -5.893 8.275 81.164 1 80.31 ? C13 TG1 1995 A 1 HETATM 11 O O2 TG1 . . . B 2 -6.308 9.27 80.576 1 77.29 ? O2 TG1 1995 A 1 HETATM 12 C C14 TG1 . . . B 2 -5.95 6.848 80.572 1 83.28 ? C14 TG1 1995 A 1 HETATM 13 C C15 TG1 . . . B 2 -4.858 6.522 79.531 1 88.18 ? C15 TG1 1995 A 1 HETATM 14 C C16 TG1 . . . B 2 -5.294 6.331 78.051 1 89.56 ? C16 TG1 1995 A 1 HETATM 15 C C17 TG1 . . . B 2 -4.74 7.429 77.093 1 89.97 ? C17 TG1 1995 A 1 HETATM 16 C C18 TG1 . . . B 2 -3.799 6.865 75.992 1 89.75 ? C18 TG1 1995 A 1 HETATM 17 C C19 TG1 . . . B 2 -4.446 6.636 74.624 1 89.69 ? C19 TG1 1995 A 1 HETATM 18 C C20 TG1 . . . B 2 -3.997 5.269 74.091 1 88.34 ? C20 TG1 1995 A 1 HETATM 19 C C3 TG1 . . . B 2 -3.245 9.456 82.675 1 73.68 ? C3 TG1 1995 A 1 HETATM 20 O O3 TG1 . . . B 2 -3.099 10.635 81.731 1 74.13 ? O3 TG1 1995 A 1 HETATM 21 C C21 TG1 . . . B 2 -2.537 10.469 80.518 1 74.42 ? C21 TG1 1995 A 1 HETATM 22 O O4 TG1 . . . B 2 -1.855 9.4 80.127 1 76.25 ? O4 TG1 1995 A 1 HETATM 23 C C22 TG1 . . . B 2 -2.748 11.69 79.528 1 74.87 ? C22 TG1 1995 A 1 HETATM 24 C C23 TG1 . . . B 2 -2.893 11.18 78.135 1 75.53 ? C23 TG1 1995 A 1 HETATM 25 C C24 TG1 . . . B 2 -2.816 13.004 79.702 1 73.33 ? C24 TG1 1995 A 1 HETATM 26 C C25 TG1 . . . B 2 -2.717 13.842 80.942 1 75.18 ? C25 TG1 1995 A 1 HETATM 27 C C4 TG1 . . . B 2 -2.64 9.701 84.049 1 73.54 ? C4 TG1 1995 A 1 HETATM 28 C C26 TG1 . . . B 2 -1.136 9.713 84.17 1 72.94 ? C26 TG1 1995 A 1 HETATM 29 C C5 TG1 . . . B 2 -3.585 9.881 85.028 1 74.18 ? C5 TG1 1995 A 1 HETATM 30 C C6 TG1 . . . B 2 -3.363 10.154 86.576 1 76.35 ? C6 TG1 1995 A 1 HETATM 31 O O5 TG1 . . . B 2 -2.638 9.093 87.233 1 76.72 ? O5 TG1 1995 A 1 HETATM 32 C C12 TG1 . . . B 2 -2.507 9.475 88.54 1 79.12 ? C12 TG1 1995 A 1 HETATM 33 O O12 TG1 . . . B 2 -1.662 9.057 89.331 1 76.94 ? O12 TG1 1995 A 1 HETATM 34 C C31 TG1 . . . B 2 -5.253 12.426 84.194 1 65.78 ? C31 TG1 1995 A 1 HETATM 35 O O9 TG1 . . . B 2 -7.129 11.131 83.833 1 67.72 ? O9 TG1 1995 A 1 HETATM 36 C C32 TG1 . . . B 2 -8.22 10.369 83.631 1 69.73 ? C32 TG1 1995 A 1 HETATM 37 O O10 TG1 . . . B 2 -8.234 9.162 83.512 1 74.55 ? O10 TG1 1995 A 1 HETATM 38 C C33 TG1 . . . B 2 -9.401 11.222 83.565 1 63.75 ? C33 TG1 1995 A 1 HETATM 39 O O7 TG1 . . . B 2 -4.855 12.822 87.342 1 71.72 ? O7 TG1 1995 A 1 HETATM 40 C C27 TG1 . . . B 2 -5.081 13.802 88.333 1 70.17 ? C27 TG1 1995 A 1 HETATM 41 O O8 TG1 . . . B 2 -5.825 13.748 89.307 1 75.59 ? O8 TG1 1995 A 1 HETATM 42 C C28 TG1 . . . B 2 -4.244 14.99 88.008 1 67.99 ? C28 TG1 1995 A 1 HETATM 43 C C29 TG1 . . . B 2 -3.239 15.239 89.121 1 63.6 ? C29 TG1 1995 A 1 HETATM 44 C C30 TG1 . . . B 2 -2.736 16.641 88.9 1 64.07 ? C30 TG1 1995 A 1 HETATM 45 O O6 TG1 . . . B 2 -5.264 9.081 87.686 1 77.32 ? O6 TG1 1995 A 1 HETATM 46 O O11 TG1 . . . B 2 -2.724 11.712 89.013 1 81.95 ? O11 TG1 1995 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 46 #