data_2C8L # _model_server_result.job_id vkcOKqpgHqDpYUFpAJ-i8w _model_server_result.datetime_utc '2024-11-01 05:29:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2c8l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1995}' # _entry.id 2C8L # _exptl.entry_id 2C8L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 650.754 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OCTANOIC ACID [3S-[3ALPHA,3ABETA,4ALPHA,6BETA,6ABETA,7BETA,8ALPHA(Z),9BALPHA]]-6-(ACETYLOXY)-2,3,-3A,4,5,6,6A,7,8,9B-DECAHYDRO-3,3A-DIHYDROXY-3,6,9-TRIMETHYL-8-[(2-METHYL-1-OXO-2-BUTENYL)OX Y]-2-OXO-4-(1-OXOBUTOXY)-AZULENO[4,5-B]FURAN-7-YL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2C8L _cell.length_a 71.514 _cell.length_b 71.514 _cell.length_c 589.355 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2C8L _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 876 A CYS 876 1_555 A SG CYS 888 A CYS 888 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A O ALA 714 A ALA 714 1_555 C NA NA . A NA 1996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc2 A OE1 GLU 732 A GLU 732 1_555 C NA NA . A NA 1996 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? # _chem_comp.formula 'C34 H50 O12' _chem_comp.formula_weight 650.754 _chem_comp.id TG1 _chem_comp.mon_nstd_flag . _chem_comp.name 'OCTANOIC ACID [3S-[3ALPHA, 3ABETA, 4ALPHA, 6BETA, 6ABETA, 7BETA, 8ALPHA(Z), 9BALPHA]]-6-(ACETYLOXY)-2,3,-3A,4,5,6,6A,7,8,9B-DECAHYDRO-3,3A-DIHYDROXY-3,6,9-TRIMETHYL-8-[(2-METHYL-1-OXO-2-BUTENYL)OX Y]-2-OXO-4-(1-OXOBUTOXY)-AZULENO[4,5-B]FURAN-7-YL ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms THAPSIGARGIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C34 C11 TG1 sing 288 n n C34 H341 TG1 sing 289 n n C34 H342 TG1 sing 290 n n C34 H343 TG1 sing 291 n n C11 C7 TG1 sing 292 n n C11 C12 TG1 sing 293 n n C11 O11 TG1 sing 294 n n C7 C8 TG1 sing 295 n n C7 C6 TG1 sing 296 n n C7 O6 TG1 sing 297 n n C8 C9 TG1 sing 298 n n C8 O7 TG1 sing 299 n n C8 HC8 TG1 sing 300 n n C9 C10 TG1 sing 301 n n C9 HC91 TG1 sing 302 n n C9 HC92 TG1 sing 303 n n C10 C1 TG1 sing 304 n n C10 C31 TG1 sing 305 n n C10 O9 TG1 sing 306 n n C1 C2 TG1 sing 307 n n C1 C5 TG1 sing 308 n n C1 HC1 TG1 sing 309 n n C2 O1 TG1 sing 310 n n C2 C3 TG1 sing 311 n n C2 HC2 TG1 sing 312 n n O1 C13 TG1 sing 313 n n C13 O2 TG1 doub 314 n n C13 C14 TG1 sing 315 n n C14 C15 TG1 sing 316 n n C14 H141 TG1 sing 317 n n C14 H142 TG1 sing 318 n n C15 C16 TG1 sing 319 n n C15 H151 TG1 sing 320 n n C15 H152 TG1 sing 321 n n C16 C17 TG1 sing 322 n n C16 H161 TG1 sing 323 n n C16 H162 TG1 sing 324 n n C17 C18 TG1 sing 325 n n C17 H171 TG1 sing 326 n n C17 H172 TG1 sing 327 n n C18 C19 TG1 sing 328 n n C18 H181 TG1 sing 329 n n C18 H182 TG1 sing 330 n n C19 C20 TG1 sing 331 n n C19 H191 TG1 sing 332 n n C19 H192 TG1 sing 333 n n C20 H201 TG1 sing 334 n n C20 H202 TG1 sing 335 n n C20 H203 TG1 sing 336 n n C3 O3 TG1 sing 337 n n C3 C4 TG1 sing 338 n n C3 HC3 TG1 sing 339 n n O3 C21 TG1 sing 340 n n C21 O4 TG1 doub 341 n n C21 C22 TG1 sing 342 n n C22 C23 TG1 sing 343 n n C22 C24 TG1 doub 344 z n C23 H231 TG1 sing 345 n n C23 H232 TG1 sing 346 n n C23 H233 TG1 sing 347 n n C24 C25 TG1 sing 348 n n C24 H24 TG1 sing 349 n n C25 H251 TG1 sing 350 n n C25 H252 TG1 sing 351 n n C25 H253 TG1 sing 352 n n C4 C26 TG1 sing 353 n n C4 C5 TG1 doub 354 n n C26 H261 TG1 sing 355 n n C26 H262 TG1 sing 356 n n C26 H263 TG1 sing 357 n n C5 C6 TG1 sing 358 n n C6 O5 TG1 sing 359 n n C6 HC6 TG1 sing 360 n n O5 C12 TG1 sing 361 n n C12 O12 TG1 doub 362 n n C31 H311 TG1 sing 363 n n C31 H312 TG1 sing 364 n n C31 H313 TG1 sing 365 n n O9 C32 TG1 sing 366 n n C32 O10 TG1 doub 367 n n C32 C33 TG1 sing 368 n n C33 H331 TG1 sing 369 n n C33 H332 TG1 sing 370 n n C33 H333 TG1 sing 371 n n O7 C27 TG1 sing 372 n n C27 O8 TG1 doub 373 n n C27 C28 TG1 sing 374 n n C28 C29 TG1 sing 375 n n C28 H281 TG1 sing 376 n n C28 H282 TG1 sing 377 n n C29 C30 TG1 sing 378 n n C29 H291 TG1 sing 379 n n C29 H292 TG1 sing 380 n n C30 H301 TG1 sing 381 n n C30 H302 TG1 sing 382 n n C30 H303 TG1 sing 383 n n O6 HO6 TG1 sing 384 n n O11 HO11 TG1 sing 385 n n # _atom_sites.entry_id 2C8L _atom_sites.fract_transf_matrix[1][1] 0.013983 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013983 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.001697 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 TG1 A 1 1995 1995 TG1 TG1 . C 3 NA A 1 1996 1996 NA NA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C34 TG1 . . . B 2 -4.359 11.042 90.474 1 60.91 ? C34 TG1 1995 A 1 HETATM 2 C C11 TG1 . . . B 2 -3.555 11.242 89.137 1 58.84 ? C11 TG1 1995 A 1 HETATM 3 C C7 TG1 . . . B 2 -4.466 11.054 87.861 1 59.41 ? C7 TG1 1995 A 1 HETATM 4 C C8 TG1 . . . B 2 -5.537 12.198 87.616 1 58.55 ? C8 TG1 1995 A 1 HETATM 5 C C9 TG1 . . . B 2 -6.44 12.09 86.366 1 57.65 ? C9 TG1 1995 A 1 HETATM 6 C C10 TG1 . . . B 2 -5.851 11.753 84.947 1 57.7 ? C10 TG1 1995 A 1 HETATM 7 C C1 TG1 . . . B 2 -4.919 10.432 84.725 1 57.76 ? C1 TG1 1995 A 1 HETATM 8 C C2 TG1 . . . B 2 -4.633 10.126 83.201 1 59.24 ? C2 TG1 1995 A 1 HETATM 9 O O1 TG1 . . . B 2 -5.112 8.807 82.779 1 59.21 ? O1 TG1 1995 A 1 HETATM 10 C C13 TG1 . . . B 2 -5.755 8.82 81.487 1 59.79 ? C13 TG1 1995 A 1 HETATM 11 O O2 TG1 . . . B 2 -6.22 9.804 80.905 1 60.51 ? O2 TG1 1995 A 1 HETATM 12 C C14 TG1 . . . B 2 -5.783 7.387 80.893 1 59.43 ? C14 TG1 1995 A 1 HETATM 13 C C15 TG1 . . . B 2 -4.785 7.13 79.739 1 60.55 ? C15 TG1 1995 A 1 HETATM 14 C C16 TG1 . . . B 2 -5.292 7.298 78.273 1 59.6 ? C16 TG1 1995 A 1 HETATM 15 C C17 TG1 . . . B 2 -4.171 7.728 77.266 1 59.89 ? C17 TG1 1995 A 1 HETATM 16 C C18 TG1 . . . B 2 -3.743 6.59 76.288 1 60.46 ? C18 TG1 1995 A 1 HETATM 17 C C19 TG1 . . . B 2 -3.645 6.979 74.802 1 61.93 ? C19 TG1 1995 A 1 HETATM 18 C C20 TG1 . . . B 2 -3.427 5.704 73.962 1 61.7 ? C20 TG1 1995 A 1 HETATM 19 C C3 TG1 . . . B 2 -3.124 10.116 82.968 1 59.97 ? C3 TG1 1995 A 1 HETATM 20 O O3 TG1 . . . B 2 -2.979 11.285 82.002 1 59.82 ? O3 TG1 1995 A 1 HETATM 21 C C21 TG1 . . . B 2 -2.385 11.097 80.812 1 59.45 ? C21 TG1 1995 A 1 HETATM 22 O O4 TG1 . . . B 2 -1.529 10.125 80.526 1 59.69 ? O4 TG1 1995 A 1 HETATM 23 C C22 TG1 . . . B 2 -2.791 12.148 79.699 1 59.97 ? C22 TG1 1995 A 1 HETATM 24 C C23 TG1 . . . B 2 -3.287 11.409 78.495 1 61.56 ? C23 TG1 1995 A 1 HETATM 25 C C24 TG1 . . . B 2 -2.776 13.482 79.635 1 58.49 ? C24 TG1 1995 A 1 HETATM 26 C C25 TG1 . . . B 2 -2.356 14.522 80.63 1 58.45 ? C25 TG1 1995 A 1 HETATM 27 C C4 TG1 . . . B 2 -2.545 10.39 84.343 1 60.02 ? C4 TG1 1995 A 1 HETATM 28 C C26 TG1 . . . B 2 -1.047 10.448 84.48 1 59.37 ? C26 TG1 1995 A 1 HETATM 29 C C5 TG1 . . . B 2 -3.504 10.57 85.305 1 59.05 ? C5 TG1 1995 A 1 HETATM 30 C C6 TG1 . . . B 2 -3.303 10.858 86.841 1 59.17 ? C6 TG1 1995 A 1 HETATM 31 O O5 TG1 . . . B 2 -2.569 9.815 87.508 1 58.36 ? O5 TG1 1995 A 1 HETATM 32 C C12 TG1 . . . B 2 -2.461 10.196 88.816 1 57.87 ? C12 TG1 1995 A 1 HETATM 33 O O12 TG1 . . . B 2 -1.626 9.77 89.628 1 55.07 ? O12 TG1 1995 A 1 HETATM 34 C C31 TG1 . . . B 2 -5.156 13.064 84.44 1 58.07 ? C31 TG1 1995 A 1 HETATM 35 O O9 TG1 . . . B 2 -7.031 11.817 84.025 1 58.47 ? O9 TG1 1995 A 1 HETATM 36 C C32 TG1 . . . B 2 -8.144 11.095 83.777 1 57.88 ? C32 TG1 1995 A 1 HETATM 37 O O10 TG1 . . . B 2 -8.203 9.892 83.607 1 59.82 ? O10 TG1 1995 A 1 HETATM 38 C C33 TG1 . . . B 2 -9.292 11.993 83.737 1 56.42 ? C33 TG1 1995 A 1 HETATM 39 O O7 TG1 . . . B 2 -4.847 13.497 87.606 1 57.92 ? O7 TG1 1995 A 1 HETATM 40 C C27 TG1 . . . B 2 -5.116 14.459 88.607 1 58.69 ? C27 TG1 1995 A 1 HETATM 41 O O8 TG1 . . . B 2 -5.891 14.379 89.563 1 60.39 ? O8 TG1 1995 A 1 HETATM 42 C C28 TG1 . . . B 2 -4.285 15.664 88.319 1 58.17 ? C28 TG1 1995 A 1 HETATM 43 C C29 TG1 . . . B 2 -3.159 15.785 89.325 1 56.07 ? C29 TG1 1995 A 1 HETATM 44 C C30 TG1 . . . B 2 -2.961 17.263 89.511 1 56.45 ? C30 TG1 1995 A 1 HETATM 45 O O6 TG1 . . . B 2 -5.209 9.757 87.905 1 60.36 ? O6 TG1 1995 A 1 HETATM 46 O O11 TG1 . . . B 2 -2.73 12.457 89.27 1 60.41 ? O11 TG1 1995 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 46 #