data_2CA0 # _model_server_result.job_id v8QD5ccCkqzIGsxktGf8sw _model_server_result.datetime_utc '2024-11-15 16:03:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ca0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1407}' # _entry.id 2CA0 # _exptl.entry_id 2CA0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 89.92 _cell.angle_gamma 90 _cell.entry_id 2CA0 _cell.length_a 61.088 _cell.length_b 91.972 _cell.length_c 68.901 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CA0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 374 A CYS 354 1_555 C FE HEM . A HEM 1407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? metalc ? metalc2 B SG CYS 374 B CYS 354 1_555 E FE HEM . B HEM 1407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 2CA0 _atom_sites.fract_transf_matrix[1][1] 0.01637 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] -0.000023 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010873 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014514 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 1407 1407 HEM HEM . D 3 PXI A 1 1408 1408 PXI PXI . E 2 HEM B 1 1407 1407 HEM HEM . F 3 PXI B 1 1408 1408 PXI PXI . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . G 4 HOH A 7 2007 2007 HOH HOH . G 4 HOH A 8 2008 2008 HOH HOH . G 4 HOH A 9 2009 2009 HOH HOH . G 4 HOH A 10 2010 2010 HOH HOH . G 4 HOH A 11 2011 2011 HOH HOH . G 4 HOH A 12 2012 2012 HOH HOH . G 4 HOH A 13 2013 2013 HOH HOH . G 4 HOH A 14 2014 2014 HOH HOH . G 4 HOH A 15 2015 2015 HOH HOH . G 4 HOH A 16 2016 2016 HOH HOH . G 4 HOH A 17 2017 2017 HOH HOH . G 4 HOH A 18 2018 2018 HOH HOH . G 4 HOH A 19 2019 2019 HOH HOH . G 4 HOH A 20 2020 2020 HOH HOH . G 4 HOH A 21 2021 2021 HOH HOH . G 4 HOH A 22 2022 2022 HOH HOH . G 4 HOH A 23 2023 2023 HOH HOH . G 4 HOH A 24 2024 2024 HOH HOH . G 4 HOH A 25 2025 2025 HOH HOH . G 4 HOH A 26 2026 2026 HOH HOH . G 4 HOH A 27 2027 2027 HOH HOH . G 4 HOH A 28 2028 2028 HOH HOH . G 4 HOH A 29 2029 2029 HOH HOH . G 4 HOH A 30 2030 2030 HOH HOH . G 4 HOH A 31 2031 2031 HOH HOH . G 4 HOH A 32 2032 2032 HOH HOH . G 4 HOH A 33 2033 2033 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . H 4 HOH B 4 2004 2004 HOH HOH . H 4 HOH B 5 2005 2005 HOH HOH . H 4 HOH B 6 2006 2006 HOH HOH . H 4 HOH B 7 2007 2007 HOH HOH . H 4 HOH B 8 2008 2008 HOH HOH . H 4 HOH B 9 2009 2009 HOH HOH . H 4 HOH B 10 2010 2010 HOH HOH . H 4 HOH B 11 2011 2011 HOH HOH . H 4 HOH B 12 2012 2012 HOH HOH . H 4 HOH B 13 2013 2013 HOH HOH . H 4 HOH B 14 2014 2014 HOH HOH . H 4 HOH B 15 2015 2015 HOH HOH . H 4 HOH B 16 2016 2016 HOH HOH . H 4 HOH B 17 2017 2017 HOH HOH . H 4 HOH B 18 2018 2018 HOH HOH . H 4 HOH B 19 2019 2019 HOH HOH . H 4 HOH B 20 2020 2020 HOH HOH . H 4 HOH B 21 2021 2021 HOH HOH . H 4 HOH B 22 2022 2022 HOH HOH . H 4 HOH B 23 2023 2023 HOH HOH . H 4 HOH B 24 2024 2024 HOH HOH . H 4 HOH B 25 2025 2025 HOH HOH . H 4 HOH B 26 2026 2026 HOH HOH . H 4 HOH B 27 2027 2027 HOH HOH . H 4 HOH B 28 2028 2028 HOH HOH . H 4 HOH B 29 2029 2029 HOH HOH . H 4 HOH B 30 2030 2030 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 34.762 7.952 46.768 1 3.94 ? CHA HEM 1407 A 1 HETATM 2 C CHB HEM . . . C 2 32.641 7.8 42.399 1 3.84 ? CHB HEM 1407 A 1 HETATM 3 C CHC HEM . . . C 2 36.542 9.876 40.386 1 4.85 ? CHC HEM 1407 A 1 HETATM 4 C CHD HEM . . . C 2 38.82 9.598 44.623 1 4.19 ? CHD HEM 1407 A 1 HETATM 5 C C1A HEM . . . C 2 33.903 7.613 45.737 1 4.1 ? C1A HEM 1407 A 1 HETATM 6 C C2A HEM . . . C 2 32.531 7.098 45.895 1 4.73 ? C2A HEM 1407 A 1 HETATM 7 C C3A HEM . . . C 2 31.989 7.126 44.706 1 4.77 ? C3A HEM 1407 A 1 HETATM 8 C C4A HEM . . . C 2 32.903 7.669 43.77 1 4.83 ? C4A HEM 1407 A 1 HETATM 9 C CMA HEM . . . C 2 30.67 6.461 44.406 1 8.98 ? CMA HEM 1407 A 1 HETATM 10 C CAA HEM . . . C 2 31.719 6.523 47.048 1 3.78 ? CAA HEM 1407 A 1 HETATM 11 C CBA HEM . . . C 2 32.416 5.435 47.853 1 3.09 ? CBA HEM 1407 A 1 HETATM 12 C CGA HEM . . . C 2 31.465 4.699 48.763 1 3.31 ? CGA HEM 1407 A 1 HETATM 13 O O1A HEM . . . C 2 30.691 5.342 49.496 1 4.19 ? O1A HEM 1407 A 1 HETATM 14 O O2A HEM . . . C 2 31.487 3.464 48.748 1 4.91 ? O2A HEM 1407 A 1 HETATM 15 C C1B HEM . . . C 2 33.582 8.189 41.458 1 3.85 ? C1B HEM 1407 A 1 HETATM 16 C C2B HEM . . . C 2 33.393 8.098 40.026 1 3.56 ? C2B HEM 1407 A 1 HETATM 17 C C3B HEM . . . C 2 34.499 8.7 39.466 1 4.37 ? C3B HEM 1407 A 1 HETATM 18 C C4B HEM . . . C 2 35.362 9.129 40.553 1 4.81 ? C4B HEM 1407 A 1 HETATM 19 C CMB HEM . . . C 2 32.17 7.529 39.318 1 3.09 ? CMB HEM 1407 A 1 HETATM 20 C CAB HEM . . . C 2 34.811 8.848 38.126 1 5.24 ? CAB HEM 1407 A 1 HETATM 21 C CBB HEM . . . C 2 34.168 9.857 37.288 1 8.31 ? CBB HEM 1407 A 1 HETATM 22 C C1C HEM . . . C 2 37.412 10.195 41.407 1 4.75 ? C1C HEM 1407 A 1 HETATM 23 C C2C HEM . . . C 2 38.753 10.712 41.165 1 5.74 ? C2C HEM 1407 A 1 HETATM 24 C C3C HEM . . . C 2 39.454 10.614 42.366 1 4.25 ? C3C HEM 1407 A 1 HETATM 25 C C4C HEM . . . C 2 38.495 10.062 43.337 1 4.76 ? C4C HEM 1407 A 1 HETATM 26 C CMC HEM . . . C 2 39.253 11.24 39.801 1 5.74 ? CMC HEM 1407 A 1 HETATM 27 C CAC HEM . . . C 2 40.801 10.914 42.511 1 3.09 ? CAC HEM 1407 A 1 HETATM 28 C CBC HEM . . . C 2 41.496 11.28 43.7 1 3.09 ? CBC HEM 1407 A 1 HETATM 29 C C1D HEM . . . C 2 37.957 8.945 45.524 1 5.02 ? C1D HEM 1407 A 1 HETATM 30 C C2D HEM . . . C 2 38.248 8.921 46.954 1 6.93 ? C2D HEM 1407 A 1 HETATM 31 C C3D HEM . . . C 2 37.044 8.8 47.622 1 7.3 ? C3D HEM 1407 A 1 HETATM 32 C C4D HEM . . . C 2 36.017 8.531 46.567 1 6.18 ? C4D HEM 1407 A 1 HETATM 33 C CMD HEM . . . C 2 39.671 8.95 47.588 1 8.83 ? CMD HEM 1407 A 1 HETATM 34 C CAD HEM . . . C 2 36.939 8.932 49.141 1 7.88 ? CAD HEM 1407 A 1 HETATM 35 C CBD HEM . . . C 2 35.716 9.607 49.723 1 12.97 ? CBD HEM 1407 A 1 HETATM 36 C CGD HEM . . . C 2 35.744 9.674 51.25 1 15.22 ? CGD HEM 1407 A 1 HETATM 37 O O1D HEM . . . C 2 35.889 8.608 51.9 1 15.3 ? O1D HEM 1407 A 1 HETATM 38 O O2D HEM . . . C 2 35.617 10.798 51.795 1 15.91 ? O2D HEM 1407 A 1 HETATM 39 N NA HEM . . . C 2 34.121 7.955 44.399 1 5.01 ? NA HEM 1407 A 1 HETATM 40 N NB HEM . . . C 2 34.837 8.728 41.78 1 4.06 ? NB HEM 1407 A 1 HETATM 41 N NC HEM . . . C 2 37.233 9.794 42.735 1 5.69 ? NC HEM 1407 A 1 HETATM 42 N ND HEM . . . C 2 36.589 8.693 45.282 1 6.21 ? ND HEM 1407 A 1 HETATM 43 FE FE HEM . . . C 2 35.689 8.758 43.532 1 4.38 ? FE HEM 1407 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 39 _model_server_stats.query_time_ms 382 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #