data_2CA0
#
_model_server_result.job_id            FtV91Bc8dW-GXfaN26d2CQ 
_model_server_result.datetime_utc      '2024-11-15 16:04:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2ca0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1408}' 
#
_entry.id    2CA0 
#
_exptl.entry_id    2CA0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              453.612 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-{[4-(DIMETHYLAMINO)-3-HYDROXY-6-METHYLTETRAHYDRO-2H-PYRAN-2-YL]OXY}-12-ETHYL-3,5,7,11-TETRAMETHYLOXACYCLODODEC-9-ENE-2,8-DIONE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          89.92 
_cell.angle_gamma         90 
_cell.entry_id            2CA0 
_cell.length_a            61.088 
_cell.length_b            91.972 
_cell.length_c            68.901 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2CA0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PQS monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 374 A CYS 354 1_555 C FE HEM . A HEM 1407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.951 ? 
metalc ? metalc2 B SG CYS 374 B CYS 354 1_555 E FE HEM . B HEM 1407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? 
#
_chem_comp.formula           'C25 H43 N O6' 
_chem_comp.formula_weight    453.612 
_chem_comp.id                PXI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-{[4-(DIMETHYLAMINO)-3-HYDROXY-6-METHYLTETRAHYDRO-2H-PYRAN-2-YL]OXY}-12-ETHYL-3,5,7,11-TETRAMETHYLOXACYCLODODEC-9-ENE-2,8-DIONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PXI sing 359 n n 
C1 H1C1 PXI sing 360 n n 
C1 H1C2 PXI sing 361 n n 
C1 H1C3 PXI sing 362 n n 
C2 C3 PXI sing 363 n n 
C2 H2C1 PXI sing 364 n n 
C2 H2C2 PXI sing 365 n n 
C3 O1 PXI sing 366 n n 
C3 C24 PXI sing 367 n n 
C3 H3 PXI sing 368 n n 
O1 C4 PXI sing 369 n n 
C4 O2 PXI doub 370 n n 
C4 C5 PXI sing 371 n n 
C5 C6 PXI sing 372 n n 
C5 C7 PXI sing 373 n n 
C5 H5 PXI sing 374 n n 
C6 H6C1 PXI sing 375 n n 
C6 H6C2 PXI sing 376 n n 
C6 H6C3 PXI sing 377 n n 
C7 O3 PXI sing 378 n n 
C7 C16 PXI sing 379 n n 
C7 H7 PXI sing 380 n n 
O3 C8 PXI sing 381 n n 
C8 O4 PXI sing 382 n n 
C8 C15 PXI sing 383 n n 
C8 H8 PXI sing 384 n n 
O4 C9 PXI sing 385 n n 
C9 C10 PXI sing 386 n n 
C9 C11 PXI sing 387 n n 
C9 H9 PXI sing 388 n n 
C10 H101 PXI sing 389 n n 
C10 H102 PXI sing 390 n n 
C10 H103 PXI sing 391 n n 
C11 C12 PXI sing 392 n n 
C11 H111 PXI sing 393 n n 
C11 H112 PXI sing 394 n n 
C12 N1 PXI sing 395 n n 
C12 C15 PXI sing 396 n n 
C12 H12 PXI sing 397 n n 
N1 C13 PXI sing 398 n n 
N1 C14 PXI sing 399 n n 
C13 H131 PXI sing 400 n n 
C13 H132 PXI sing 401 n n 
C13 H133 PXI sing 402 n n 
C14 H141 PXI sing 403 n n 
C14 H142 PXI sing 404 n n 
C14 H143 PXI sing 405 n n 
C15 O5 PXI sing 406 n n 
C15 H15 PXI sing 407 n n 
O5 HA PXI sing 408 n n 
C16 C17 PXI sing 409 n n 
C16 C18 PXI sing 410 n n 
C16 H16 PXI sing 411 n n 
C17 H171 PXI sing 412 n n 
C17 H172 PXI sing 413 n n 
C17 H173 PXI sing 414 n n 
C18 C19 PXI sing 415 n n 
C18 H181 PXI sing 416 n n 
C18 H182 PXI sing 417 n n 
C19 C20 PXI sing 418 n n 
C19 C21 PXI sing 419 n n 
C19 H19 PXI sing 420 n n 
C20 H201 PXI sing 421 n n 
C20 H202 PXI sing 422 n n 
C20 H203 PXI sing 423 n n 
C21 O6 PXI doub 424 n n 
C21 C22 PXI sing 425 n n 
C22 C23 PXI doub 426 e n 
C22 H22 PXI sing 427 n n 
C23 C24 PXI sing 428 n n 
C23 H23 PXI sing 429 n n 
C24 C25 PXI sing 430 n n 
C24 H24 PXI sing 431 n n 
C25 H251 PXI sing 432 n n 
C25 H252 PXI sing 433 n n 
C25 H253 PXI sing 434 n n 
#
_atom_sites.entry_id                     2CA0 
_atom_sites.fract_transf_matrix[1][1]    0.01637 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    -0.000023 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010873 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014514 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 1407 1407 HEM HEM . 
D 3 PXI A 1 1408 1408 PXI PXI . 
E 2 HEM B 1 1407 1407 HEM HEM . 
F 3 PXI B 1 1408 1408 PXI PXI . 
G 4 HOH A 1 2001 2001 HOH HOH . 
G 4 HOH A 2 2002 2002 HOH HOH . 
G 4 HOH A 3 2003 2003 HOH HOH . 
G 4 HOH A 4 2004 2004 HOH HOH . 
G 4 HOH A 5 2005 2005 HOH HOH . 
G 4 HOH A 6 2006 2006 HOH HOH . 
G 4 HOH A 7 2007 2007 HOH HOH . 
G 4 HOH A 8 2008 2008 HOH HOH . 
G 4 HOH A 9 2009 2009 HOH HOH . 
G 4 HOH A 10 2010 2010 HOH HOH . 
G 4 HOH A 11 2011 2011 HOH HOH . 
G 4 HOH A 12 2012 2012 HOH HOH . 
G 4 HOH A 13 2013 2013 HOH HOH . 
G 4 HOH A 14 2014 2014 HOH HOH . 
G 4 HOH A 15 2015 2015 HOH HOH . 
G 4 HOH A 16 2016 2016 HOH HOH . 
G 4 HOH A 17 2017 2017 HOH HOH . 
G 4 HOH A 18 2018 2018 HOH HOH . 
G 4 HOH A 19 2019 2019 HOH HOH . 
G 4 HOH A 20 2020 2020 HOH HOH . 
G 4 HOH A 21 2021 2021 HOH HOH . 
G 4 HOH A 22 2022 2022 HOH HOH . 
G 4 HOH A 23 2023 2023 HOH HOH . 
G 4 HOH A 24 2024 2024 HOH HOH . 
G 4 HOH A 25 2025 2025 HOH HOH . 
G 4 HOH A 26 2026 2026 HOH HOH . 
G 4 HOH A 27 2027 2027 HOH HOH . 
G 4 HOH A 28 2028 2028 HOH HOH . 
G 4 HOH A 29 2029 2029 HOH HOH . 
G 4 HOH A 30 2030 2030 HOH HOH . 
G 4 HOH A 31 2031 2031 HOH HOH . 
G 4 HOH A 32 2032 2032 HOH HOH . 
G 4 HOH A 33 2033 2033 HOH HOH . 
H 4 HOH B 1 2001 2001 HOH HOH . 
H 4 HOH B 2 2002 2002 HOH HOH . 
H 4 HOH B 3 2003 2003 HOH HOH . 
H 4 HOH B 4 2004 2004 HOH HOH . 
H 4 HOH B 5 2005 2005 HOH HOH . 
H 4 HOH B 6 2006 2006 HOH HOH . 
H 4 HOH B 7 2007 2007 HOH HOH . 
H 4 HOH B 8 2008 2008 HOH HOH . 
H 4 HOH B 9 2009 2009 HOH HOH . 
H 4 HOH B 10 2010 2010 HOH HOH . 
H 4 HOH B 11 2011 2011 HOH HOH . 
H 4 HOH B 12 2012 2012 HOH HOH . 
H 4 HOH B 13 2013 2013 HOH HOH . 
H 4 HOH B 14 2014 2014 HOH HOH . 
H 4 HOH B 15 2015 2015 HOH HOH . 
H 4 HOH B 16 2016 2016 HOH HOH . 
H 4 HOH B 17 2017 2017 HOH HOH . 
H 4 HOH B 18 2018 2018 HOH HOH . 
H 4 HOH B 19 2019 2019 HOH HOH . 
H 4 HOH B 20 2020 2020 HOH HOH . 
H 4 HOH B 21 2021 2021 HOH HOH . 
H 4 HOH B 22 2022 2022 HOH HOH . 
H 4 HOH B 23 2023 2023 HOH HOH . 
H 4 HOH B 24 2024 2024 HOH HOH . 
H 4 HOH B 25 2025 2025 HOH HOH . 
H 4 HOH B 26 2026 2026 HOH HOH . 
H 4 HOH B 27 2027 2027 HOH HOH . 
H 4 HOH B 28 2028 2028 HOH HOH . 
H 4 HOH B 29 2029 2029 HOH HOH . 
H 4 HOH B 30 2030 2030 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PXI . . . D 3 35.921 4.697 44.006 1 32.46 ? C1 PXI 1408 A 1 
HETATM 2 C C2 PXI . . . D 3 34.979 3.668 43.366 1 32.28 ? C2 PXI 1408 A 1 
HETATM 3 C C3 PXI . . . D 3 35.696 2.302 43.056 1 30.35 ? C3 PXI 1408 A 1 
HETATM 4 O O1 PXI . . . D 3 36.246 1.687 44.257 1 30.96 ? O1 PXI 1408 A 1 
HETATM 5 C C4 PXI . . . D 3 37.558 1.442 44.567 1 32.28 ? C4 PXI 1408 A 1 
HETATM 6 O O2 PXI . . . D 3 38.486 2.031 44.061 1 31.62 ? O2 PXI 1408 A 1 
HETATM 7 C C5 PXI . . . D 3 37.699 0.354 45.581 1 32.25 ? C5 PXI 1408 A 1 
HETATM 8 C C6 PXI . . . D 3 37.663 1.013 46.998 1 31.6 ? C6 PXI 1408 A 1 
HETATM 9 C C7 PXI . . . D 3 39.02 -0.517 45.472 1 29.5 ? C7 PXI 1408 A 1 
HETATM 10 O O3 PXI . . . D 3 38.986 -1.422 46.662 1 30.46 ? O3 PXI 1408 A 1 
HETATM 11 C C8 PXI . . . D 3 40.231 -2.032 47.163 1 31.37 ? C8 PXI 1408 A 1 
HETATM 12 O O4 PXI . . . D 3 41.463 -1.569 46.545 1 30.83 ? O4 PXI 1408 A 1 
HETATM 13 C C9 PXI . . . D 3 42.63 -2.346 47.031 1 30.71 ? C9 PXI 1408 A 1 
HETATM 14 C C10 PXI . . . D 3 43.866 -1.911 46.26 1 31.35 ? C10 PXI 1408 A 1 
HETATM 15 C C11 PXI . . . D 3 42.862 -2.093 48.537 1 29.8 ? C11 PXI 1408 A 1 
HETATM 16 C C12 PXI . . . D 3 41.606 -2.641 49.285 1 31.4 ? C12 PXI 1408 A 1 
HETATM 17 N N1 PXI . . . D 3 41.645 -2.588 50.805 1 32.53 ? N1 PXI 1408 A 1 
HETATM 18 C C13 PXI . . . D 3 41.187 -3.903 51.308 1 32.94 ? C13 PXI 1408 A 1 
HETATM 19 C C14 PXI . . . D 3 42.989 -2.391 51.351 1 31.97 ? C14 PXI 1408 A 1 
HETATM 20 C C15 PXI . . . D 3 40.298 -1.881 48.729 1 30.31 ? C15 PXI 1408 A 1 
HETATM 21 O O5 PXI . . . D 3 39.123 -2.465 49.305 1 30.03 ? O5 PXI 1408 A 1 
HETATM 22 C C16 PXI . . . D 3 39.076 -1.315 44.057 1 28.71 ? C16 PXI 1408 A 1 
HETATM 23 C C17 PXI . . . D 3 40.471 -1.626 43.563 1 27.37 ? C17 PXI 1408 A 1 
HETATM 24 C C18 PXI . . . D 3 38.255 -2.615 44.106 1 30.81 ? C18 PXI 1408 A 1 
HETATM 25 C C19 PXI . . . D 3 37.103 -2.855 43.046 1 31.82 ? C19 PXI 1408 A 1 
HETATM 26 C C20 PXI . . . D 3 37.181 -4.269 42.499 1 30.98 ? C20 PXI 1408 A 1 
HETATM 27 C C21 PXI . . . D 3 37.116 -1.825 41.811 1 33.17 ? C21 PXI 1408 A 1 
HETATM 28 O O6 PXI . . . D 3 37.711 -2.124 40.785 1 35.78 ? O6 PXI 1408 A 1 
HETATM 29 C C22 PXI . . . D 3 36.464 -0.5 41.832 1 32.51 ? C22 PXI 1408 A 1 
HETATM 30 C C23 PXI . . . D 3 35.274 -0.22 42.358 1 32.66 ? C23 PXI 1408 A 1 
HETATM 31 C C24 PXI . . . D 3 34.709 1.23 42.347 1 32.65 ? C24 PXI 1408 A 1 
HETATM 32 C C25 PXI . . . D 3 33.322 1.126 43.037 1 31.93 ? C25 PXI 1408 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           32 
#