data_2CAD
#
_model_server_result.job_id            TRutnubti-tOsZueZpoRBQ 
_model_server_result.datetime_utc      '2025-03-06 09:58:39' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2cad 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1151}' 
#
_entry.id    2CAD 
#
_exptl.entry_id    2CAD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2CAD 
_cell.length_a            70.807 
_cell.length_b            70.807 
_cell.length_c            228.613 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2CAD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 96 A CYS 96 1_555 A SG CYS 96 A CYS 96 8_555 ? A ? ? A ? ? ? ? ? ? ? 2.721 ? 
metalc ? metalc1 A NE2 HIS 74 A HIS 74 1_555 H NI NI . A NI 1152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc2 A NE2 HIS 88 A HIS 88 8_555 L NI NI . B NI 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc3 A NE2 HIS 101 A HIS 101 1_555 H NI NI . A NI 1152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc4 H NI NI . A NI 1152 1_555 N O HOH . A HOH 2022 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc5 H NI NI . A NI 1152 1_555 N O HOH . A HOH 2062 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc6 H NI NI . A NI 1152 1_555 B NE2 HIS 88 B HIS 88 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc7 H NI NI . A NI 1152 1_555 O O HOH . B HOH 2028 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc8 B NE2 HIS 74 B HIS 74 1_555 M NI NI . B NI 1152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc9 B NE2 HIS 75 B HIS 75 1_555 M NI NI . B NI 1152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? 
metalc ? metalc10 B NE2 HIS 99 B HIS 99 1_555 L NI NI . B NI 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? 
metalc ? metalc11 B ND1 HIS 101 B HIS 101 1_555 L NI NI . B NI 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc12 B O GLU 104 B GLU 104 1_555 M NI NI . B NI 1152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
metalc ? metalc13 B SG CYS 107 B CYS 107 1_555 L NI NI . B NI 1151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc14 K O7 CIT . B CIT 1150 1_555 M NI NI . B NI 1152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc15 K O2 CIT . B CIT 1150 1_555 M NI NI . B NI 1152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
metalc ? metalc16 K O5 CIT . B CIT 1150 1_555 M NI NI . B NI 1152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 153 n n 
C1 C2 GOL sing 154 n n 
C1 H11 GOL sing 155 n n 
C1 H12 GOL sing 156 n n 
O1 HO1 GOL sing 157 n n 
C2 O2 GOL sing 158 n n 
C2 C3 GOL sing 159 n n 
C2 H2 GOL sing 160 n n 
O2 HO2 GOL sing 161 n n 
C3 O3 GOL sing 162 n n 
C3 H31 GOL sing 163 n n 
C3 H32 GOL sing 164 n n 
O3 HO3 GOL sing 165 n n 
#
_atom_sites.entry_id                     2CAD 
_atom_sites.fract_transf_matrix[1][1]    0.014123 
_atom_sites.fract_transf_matrix[1][2]    0.008154 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016308 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004374 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FMT A 1 1147 1147 FMT FMT . 
D 2 FMT A 1 1148 1148 FMT FMT . 
E 2 FMT A 1 1149 1149 FMT FMT . 
F 2 FMT A 1 1150 1150 FMT FMT . 
G 3 GOL A 1 1151 1151 GOL GOL . 
H 4 NI A 1 1152 1152 NI NI . 
I 3 GOL B 1 1148 1148 GOL GOL . 
J 3 GOL B 1 1149 1149 GOL GOL . 
K 5 CIT B 1 1150 1150 CIT CIT . 
L 4 NI B 1 1151 1151 NI NI . 
M 4 NI B 1 1152 1152 NI NI . 
N 6 HOH A 1 2001 2001 HOH HOH . 
N 6 HOH A 2 2002 2002 HOH HOH . 
N 6 HOH A 3 2003 2003 HOH HOH . 
N 6 HOH A 4 2004 2004 HOH HOH . 
N 6 HOH A 5 2005 2005 HOH HOH . 
N 6 HOH A 6 2006 2006 HOH HOH . 
N 6 HOH A 7 2007 2007 HOH HOH . 
N 6 HOH A 8 2008 2008 HOH HOH . 
N 6 HOH A 9 2009 2009 HOH HOH . 
N 6 HOH A 10 2010 2010 HOH HOH . 
N 6 HOH A 11 2011 2011 HOH HOH . 
N 6 HOH A 12 2012 2012 HOH HOH . 
N 6 HOH A 13 2013 2013 HOH HOH . 
N 6 HOH A 14 2014 2014 HOH HOH . 
N 6 HOH A 15 2015 2015 HOH HOH . 
N 6 HOH A 16 2016 2016 HOH HOH . 
N 6 HOH A 17 2017 2017 HOH HOH . 
N 6 HOH A 18 2018 2018 HOH HOH . 
N 6 HOH A 19 2019 2019 HOH HOH . 
N 6 HOH A 20 2020 2020 HOH HOH . 
N 6 HOH A 21 2021 2021 HOH HOH . 
N 6 HOH A 22 2022 2022 HOH HOH . 
N 6 HOH A 23 2023 2023 HOH HOH . 
N 6 HOH A 24 2024 2024 HOH HOH . 
N 6 HOH A 25 2025 2025 HOH HOH . 
N 6 HOH A 26 2026 2026 HOH HOH . 
N 6 HOH A 27 2027 2027 HOH HOH . 
N 6 HOH A 28 2028 2028 HOH HOH . 
N 6 HOH A 29 2029 2029 HOH HOH . 
N 6 HOH A 30 2030 2030 HOH HOH . 
N 6 HOH A 31 2031 2031 HOH HOH . 
N 6 HOH A 32 2032 2032 HOH HOH . 
N 6 HOH A 33 2033 2033 HOH HOH . 
N 6 HOH A 34 2034 2034 HOH HOH . 
N 6 HOH A 35 2035 2035 HOH HOH . 
N 6 HOH A 36 2036 2036 HOH HOH . 
N 6 HOH A 37 2037 2037 HOH HOH . 
N 6 HOH A 38 2038 2038 HOH HOH . 
N 6 HOH A 39 2039 2039 HOH HOH . 
N 6 HOH A 40 2040 2040 HOH HOH . 
N 6 HOH A 41 2041 2041 HOH HOH . 
N 6 HOH A 42 2042 2042 HOH HOH . 
N 6 HOH A 43 2043 2043 HOH HOH . 
N 6 HOH A 44 2044 2044 HOH HOH . 
N 6 HOH A 45 2045 2045 HOH HOH . 
N 6 HOH A 46 2046 2046 HOH HOH . 
N 6 HOH A 47 2047 2047 HOH HOH . 
N 6 HOH A 48 2048 2048 HOH HOH . 
N 6 HOH A 49 2049 2049 HOH HOH . 
N 6 HOH A 50 2050 2050 HOH HOH . 
N 6 HOH A 51 2051 2051 HOH HOH . 
N 6 HOH A 52 2052 2052 HOH HOH . 
N 6 HOH A 53 2053 2053 HOH HOH . 
N 6 HOH A 54 2054 2054 HOH HOH . 
N 6 HOH A 55 2055 2055 HOH HOH . 
N 6 HOH A 56 2056 2056 HOH HOH . 
N 6 HOH A 57 2057 2057 HOH HOH . 
N 6 HOH A 58 2058 2058 HOH HOH . 
N 6 HOH A 59 2059 2059 HOH HOH . 
N 6 HOH A 60 2060 2060 HOH HOH . 
N 6 HOH A 61 2061 2061 HOH HOH . 
N 6 HOH A 62 2062 2062 HOH HOH . 
N 6 HOH A 63 2063 2063 HOH HOH . 
O 6 HOH B 1 2001 2001 HOH HOH . 
O 6 HOH B 2 2002 2002 HOH HOH . 
O 6 HOH B 3 2003 2003 HOH HOH . 
O 6 HOH B 4 2004 2004 HOH HOH . 
O 6 HOH B 5 2005 2005 HOH HOH . 
O 6 HOH B 6 2006 2006 HOH HOH . 
O 6 HOH B 7 2007 2007 HOH HOH . 
O 6 HOH B 8 2008 2008 HOH HOH . 
O 6 HOH B 9 2009 2009 HOH HOH . 
O 6 HOH B 10 2010 2010 HOH HOH . 
O 6 HOH B 11 2011 2011 HOH HOH . 
O 6 HOH B 12 2012 2012 HOH HOH . 
O 6 HOH B 13 2013 2013 HOH HOH . 
O 6 HOH B 14 2014 2014 HOH HOH . 
O 6 HOH B 15 2015 2015 HOH HOH . 
O 6 HOH B 16 2016 2016 HOH HOH . 
O 6 HOH B 17 2017 2017 HOH HOH . 
O 6 HOH B 18 2018 2018 HOH HOH . 
O 6 HOH B 19 2019 2019 HOH HOH . 
O 6 HOH B 20 2020 2020 HOH HOH . 
O 6 HOH B 21 2021 2021 HOH HOH . 
O 6 HOH B 22 2022 2022 HOH HOH . 
O 6 HOH B 23 2023 2023 HOH HOH . 
O 6 HOH B 24 2024 2024 HOH HOH . 
O 6 HOH B 25 2025 2025 HOH HOH . 
O 6 HOH B 26 2026 2026 HOH HOH . 
O 6 HOH B 27 2027 2027 HOH HOH . 
O 6 HOH B 28 2028 2028 HOH HOH . 
O 6 HOH B 29 2029 2029 HOH HOH . 
O 6 HOH B 30 2030 2030 HOH HOH . 
O 6 HOH B 31 2031 2031 HOH HOH . 
O 6 HOH B 32 2032 2032 HOH HOH . 
O 6 HOH B 33 2033 2033 HOH HOH . 
O 6 HOH B 34 2034 2034 HOH HOH . 
O 6 HOH B 35 2035 2035 HOH HOH . 
O 6 HOH B 36 2036 2036 HOH HOH . 
O 6 HOH B 37 2037 2037 HOH HOH . 
O 6 HOH B 38 2038 2038 HOH HOH . 
O 6 HOH B 39 2039 2039 HOH HOH . 
O 6 HOH B 40 2040 2040 HOH HOH . 
O 6 HOH B 41 2041 2041 HOH HOH . 
O 6 HOH B 42 2042 2042 HOH HOH . 
O 6 HOH B 43 2043 2043 HOH HOH . 
O 6 HOH B 44 2044 2044 HOH HOH . 
O 6 HOH B 45 2045 2045 HOH HOH . 
O 6 HOH B 46 2046 2046 HOH HOH . 
O 6 HOH B 47 2047 2047 HOH HOH . 
O 6 HOH B 48 2048 2048 HOH HOH . 
O 6 HOH B 49 2049 2049 HOH HOH . 
O 6 HOH B 50 2050 2050 HOH HOH . 
O 6 HOH B 51 2051 2051 HOH HOH . 
O 6 HOH B 52 2052 2052 HOH HOH . 
O 6 HOH B 53 2053 2053 HOH HOH . 
O 6 HOH B 54 2054 2054 HOH HOH . 
O 6 HOH B 55 2055 2055 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 3 34.353 4.143 11.344 1 46.95 ? C1 GOL 1151 A 1 
HETATM 2 O O1 GOL . . . G 3 33.675 5.378 11.153 1 45.48 ? O1 GOL 1151 A 1 
HETATM 3 C C2 GOL . . . G 3 34.379 3.298 10.066 1 48.64 ? C2 GOL 1151 A 1 
HETATM 4 O O2 GOL . . . G 3 34.711 4.106 8.939 1 50.72 ? O2 GOL 1151 A 1 
HETATM 5 C C3 GOL . . . G 3 35.293 2.057 10.114 1 48.65 ? C3 GOL 1151 A 1 
HETATM 6 O O3 GOL . . . G 3 36.137 1.941 11.254 1 49.49 ? O3 GOL 1151 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           6 
#