data_2CAH # _model_server_result.job_id 6htkQaYHqMmDLoevXBxkhQ _model_server_result.datetime_utc '2025-07-01 23:43:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2cah # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":486}' # _entry.id 2CAH # _exptl.entry_id 2CAH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2CAH _cell.length_a 112.36 _cell.length_b 112.36 _cell.length_c 249.14 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CAH _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 112.36 0 0 3 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 11_655 -x+y+1,y,-z -1 0 0 0 1 0 0 0 -1 112.36 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ARG 52 A ARG 52 1_555 A N OMT 53 A OMT 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C OMT 53 A OMT 53 1_555 A N HIS 54 A HIS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? metalc ? metalc1 A OH TYR 337 A TYR 337 1_555 B FE HEM . A HEM 485 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 319 n n PA O2A NDP sing 320 n n PA O5B NDP sing 321 n n PA O3 NDP sing 322 n n O2A HOA2 NDP sing 323 n n O5B C5B NDP sing 324 n n C5B C4B NDP sing 325 n n C5B H51A NDP sing 326 n n C5B H52A NDP sing 327 n n C4B O4B NDP sing 328 n n C4B C3B NDP sing 329 n n C4B H4B NDP sing 330 n n O4B C1B NDP sing 331 n n C3B O3B NDP sing 332 n n C3B C2B NDP sing 333 n n C3B H3B NDP sing 334 n n O3B HO3A NDP sing 335 n n C2B O2B NDP sing 336 n n C2B C1B NDP sing 337 n n C2B H2B NDP sing 338 n n O2B P2B NDP sing 339 n n C1B N9A NDP sing 340 n n C1B H1B NDP sing 341 n n N9A C8A NDP sing 342 n y N9A C4A NDP sing 343 n y C8A N7A NDP doub 344 n y C8A H8A NDP sing 345 n n N7A C5A NDP sing 346 n y C5A C6A NDP sing 347 n y C5A C4A NDP doub 348 n y C6A N6A NDP sing 349 n n C6A N1A NDP doub 350 n y N6A H61A NDP sing 351 n n N6A H62A NDP sing 352 n n N1A C2A NDP sing 353 n y C2A N3A NDP doub 354 n y C2A H2A NDP sing 355 n n N3A C4A NDP sing 356 n y O3 PN NDP sing 357 n n PN O1N NDP doub 358 n n PN O2N NDP sing 359 n n PN O5D NDP sing 360 n n O2N H21N NDP sing 361 n n O5D C5D NDP sing 362 n n C5D C4D NDP sing 363 n n C5D H51N NDP sing 364 n n C5D H52N NDP sing 365 n n C4D O4D NDP sing 366 n n C4D C3D NDP sing 367 n n C4D H4D NDP sing 368 n n O4D C1D NDP sing 369 n n C3D O3D NDP sing 370 n n C3D C2D NDP sing 371 n n C3D H3D NDP sing 372 n n O3D HO3N NDP sing 373 n n C2D O2D NDP sing 374 n n C2D C1D NDP sing 375 n n C2D H2D NDP sing 376 n n O2D HO2N NDP sing 377 n n C1D N1N NDP sing 378 n n C1D H1D NDP sing 379 n n N1N C2N NDP sing 380 n n N1N C6N NDP sing 381 n n C2N C3N NDP doub 382 n n C2N H2N NDP sing 383 n n C3N C7N NDP sing 384 n n C3N C4N NDP sing 385 n n C7N O7N NDP doub 386 n n C7N N7N NDP sing 387 n n N7N H71N NDP sing 388 n n N7N H72N NDP sing 389 n n C4N C5N NDP sing 390 n n C4N H41N NDP sing 391 n n C4N H42N NDP sing 392 n n C5N C6N NDP doub 393 n n C5N H5N NDP sing 394 n n C6N H6N NDP sing 395 n n P2B O1X NDP doub 396 n n P2B O2X NDP sing 397 n n P2B O3X NDP sing 398 n n O2X HOP2 NDP sing 399 n n O3X HOP3 NDP sing 400 n n # _atom_sites.entry_id 2CAH _atom_sites.fract_transf_matrix[1][1] 0.0089 _atom_sites.fract_transf_matrix[1][2] 0.005138 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010277 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004014 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 485 1 HEM HEM . C 3 NDP A 1 486 2 NDP NDP . D 4 HOH A 1 487 0 HOH HOH . D 4 HOH A 2 488 1 HOH HOH . D 4 HOH A 3 489 2 HOH HOH . D 4 HOH A 4 490 3 HOH HOH . D 4 HOH A 5 491 4 HOH HOH . D 4 HOH A 6 492 5 HOH HOH . D 4 HOH A 7 493 6 HOH HOH . D 4 HOH A 8 494 7 HOH HOH . D 4 HOH A 9 495 8 HOH HOH . D 4 HOH A 10 496 9 HOH HOH . D 4 HOH A 11 497 10 HOH HOH . D 4 HOH A 12 498 11 HOH HOH . D 4 HOH A 13 499 12 HOH HOH . D 4 HOH A 14 500 13 HOH HOH . D 4 HOH A 15 501 14 HOH HOH . D 4 HOH A 16 502 15 HOH HOH . D 4 HOH A 17 503 16 HOH HOH . D 4 HOH A 18 504 17 HOH HOH . D 4 HOH A 19 505 18 HOH HOH . D 4 HOH A 20 506 19 HOH HOH . D 4 HOH A 21 507 20 HOH HOH . D 4 HOH A 22 508 21 HOH HOH . D 4 HOH A 23 509 22 HOH HOH . D 4 HOH A 24 510 23 HOH HOH . D 4 HOH A 25 511 24 HOH HOH . D 4 HOH A 26 512 25 HOH HOH . D 4 HOH A 27 513 26 HOH HOH . D 4 HOH A 28 514 27 HOH HOH . D 4 HOH A 29 515 28 HOH HOH . D 4 HOH A 30 516 29 HOH HOH . D 4 HOH A 31 517 30 HOH HOH . D 4 HOH A 32 518 31 HOH HOH . D 4 HOH A 33 519 32 HOH HOH . D 4 HOH A 34 520 33 HOH HOH . D 4 HOH A 35 521 34 HOH HOH . D 4 HOH A 36 522 35 HOH HOH . D 4 HOH A 37 523 36 HOH HOH . D 4 HOH A 38 524 37 HOH HOH . D 4 HOH A 39 525 38 HOH HOH . D 4 HOH A 40 526 39 HOH HOH . D 4 HOH A 41 527 40 HOH HOH . D 4 HOH A 42 528 41 HOH HOH . D 4 HOH A 43 529 42 HOH HOH . D 4 HOH A 44 530 43 HOH HOH . D 4 HOH A 45 531 44 HOH HOH . D 4 HOH A 46 532 45 HOH HOH . D 4 HOH A 47 533 46 HOH HOH . D 4 HOH A 48 534 47 HOH HOH . D 4 HOH A 49 535 48 HOH HOH . D 4 HOH A 50 536 49 HOH HOH . D 4 HOH A 51 537 50 HOH HOH . D 4 HOH A 52 538 51 HOH HOH . D 4 HOH A 53 539 52 HOH HOH . D 4 HOH A 54 540 53 HOH HOH . D 4 HOH A 55 541 54 HOH HOH . D 4 HOH A 56 542 55 HOH HOH . D 4 HOH A 57 543 56 HOH HOH . D 4 HOH A 58 544 57 HOH HOH . D 4 HOH A 59 545 58 HOH HOH . D 4 HOH A 60 546 59 HOH HOH . D 4 HOH A 61 547 60 HOH HOH . D 4 HOH A 62 548 61 HOH HOH . D 4 HOH A 63 549 62 HOH HOH . D 4 HOH A 64 550 63 HOH HOH . D 4 HOH A 65 551 64 HOH HOH . D 4 HOH A 66 552 65 HOH HOH . D 4 HOH A 67 553 66 HOH HOH . D 4 HOH A 68 554 67 HOH HOH . D 4 HOH A 69 555 68 HOH HOH . D 4 HOH A 70 556 69 HOH HOH . D 4 HOH A 71 557 70 HOH HOH . D 4 HOH A 72 558 71 HOH HOH . D 4 HOH A 73 559 72 HOH HOH . D 4 HOH A 74 560 73 HOH HOH . D 4 HOH A 75 561 74 HOH HOH . D 4 HOH A 76 562 75 HOH HOH . D 4 HOH A 77 563 76 HOH HOH . D 4 HOH A 78 564 77 HOH HOH . D 4 HOH A 79 565 78 HOH HOH . D 4 HOH A 80 566 79 HOH HOH . D 4 HOH A 81 567 80 HOH HOH . D 4 HOH A 82 568 81 HOH HOH . D 4 HOH A 83 569 82 HOH HOH . D 4 HOH A 84 570 83 HOH HOH . D 4 HOH A 85 571 84 HOH HOH . D 4 HOH A 86 572 85 HOH HOH . D 4 HOH A 87 573 86 HOH HOH . D 4 HOH A 88 574 87 HOH HOH . D 4 HOH A 89 575 88 HOH HOH . D 4 HOH A 90 576 89 HOH HOH . D 4 HOH A 91 577 90 HOH HOH . D 4 HOH A 92 578 91 HOH HOH . D 4 HOH A 93 579 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . C 3 66.467 33.872 33.8 1 33.82 ? PA NDP 486 A 1 HETATM 2 O O1A NDP . . . C 3 66.439 35.352 33.783 1 35.03 ? O1A NDP 486 A 1 HETATM 3 O O2A NDP . . . C 3 67.603 33.154 34.434 1 28.65 ? O2A NDP 486 A 1 HETATM 4 O O5B NDP . . . C 3 66.609 33.508 32.247 1 38.68 ? O5B NDP 486 A 1 HETATM 5 C C5B NDP . . . C 3 65.595 33.927 31.341 1 33.83 ? C5B NDP 486 A 1 HETATM 6 C C4B NDP . . . C 3 65.475 33.071 30.168 1 33.22 ? C4B NDP 486 A 1 HETATM 7 O O4B NDP . . . C 3 64.519 33.673 29.289 1 35.27 ? O4B NDP 486 A 1 HETATM 8 C C3B NDP . . . C 3 66.695 33.534 29.501 1 32.64 ? C3B NDP 486 A 1 HETATM 9 O O3B NDP . . . C 3 67.47 32.316 29.265 1 33.79 ? O3B NDP 486 A 1 HETATM 10 C C2B NDP . . . C 3 66.485 34.267 28.298 1 30.79 ? C2B NDP 486 A 1 HETATM 11 O O2B NDP . . . C 3 67.272 34.221 27.092 1 33.31 ? O2B NDP 486 A 1 HETATM 12 C C1B NDP . . . C 3 65.121 33.789 27.984 1 31.18 ? C1B NDP 486 A 1 HETATM 13 N N9A NDP . . . C 3 64.329 34.464 26.992 1 28.09 ? N9A NDP 486 A 1 HETATM 14 C C8A NDP . . . C 3 64.28 35.771 26.684 1 29.16 ? C8A NDP 486 A 1 HETATM 15 N N7A NDP . . . C 3 63.399 36.091 25.791 1 32.99 ? N7A NDP 486 A 1 HETATM 16 C C5A NDP . . . C 3 62.799 34.866 25.476 1 31.69 ? C5A NDP 486 A 1 HETATM 17 C C6A NDP . . . C 3 61.769 34.518 24.562 1 31.56 ? C6A NDP 486 A 1 HETATM 18 N N6A NDP . . . C 3 61.134 35.43 23.797 1 24.45 ? N6A NDP 486 A 1 HETATM 19 N N1A NDP . . . C 3 61.423 33.214 24.507 1 28.84 ? N1A NDP 486 A 1 HETATM 20 C C2A NDP . . . C 3 62.071 32.337 25.264 1 24.34 ? C2A NDP 486 A 1 HETATM 21 N N3A NDP . . . C 3 63.041 32.54 26.149 1 25.78 ? N3A NDP 486 A 1 HETATM 22 C C4A NDP . . . C 3 63.374 33.854 26.195 1 29.35 ? C4A NDP 486 A 1 HETATM 23 O O3 NDP . . . C 3 65.042 33.284 34.21 1 24.18 ? O3 NDP 486 A 1 HETATM 24 P PN NDP . . . C 3 64.684 31.923 34.993 1 30.43 ? PN NDP 486 A 1 HETATM 25 O O1N NDP . . . C 3 64.271 32.202 36.398 1 35.81 ? O1N NDP 486 A 1 HETATM 26 O O2N NDP . . . C 3 65.68 30.832 34.734 1 30.52 ? O2N NDP 486 A 1 HETATM 27 O O5D NDP . . . C 3 63.327 31.492 34.278 1 30.45 ? O5D NDP 486 A 1 HETATM 28 C C5D NDP . . . C 3 62.25 32.414 34.06 1 24 ? C5D NDP 486 A 1 HETATM 29 C C4D NDP . . . C 3 61.615 32.161 32.666 1 25.64 ? C4D NDP 486 A 1 HETATM 30 O O4D NDP . . . C 3 62.575 32.37 31.569 1 26.07 ? O4D NDP 486 A 1 HETATM 31 C C3D NDP . . . C 3 61.038 30.732 32.577 1 22.93 ? C3D NDP 486 A 1 HETATM 32 O O3D NDP . . . C 3 59.607 30.851 32.912 1 28.64 ? O3D NDP 486 A 1 HETATM 33 C C2D NDP . . . C 3 61.019 30.562 31.017 1 22.09 ? C2D NDP 486 A 1 HETATM 34 O O2D NDP . . . C 3 59.752 31.05 30.49 1 25.24 ? O2D NDP 486 A 1 HETATM 35 C C1D NDP . . . C 3 62.182 31.46 30.542 1 23.25 ? C1D NDP 486 A 1 HETATM 36 N N1N NDP . . . C 3 63.281 30.601 30.176 1 23.36 ? N1N NDP 486 A 1 HETATM 37 C C2N NDP . . . C 3 63.941 29.82 31.124 1 26.16 ? C2N NDP 486 A 1 HETATM 38 C C3N NDP . . . C 3 64.953 28.948 30.796 1 30.17 ? C3N NDP 486 A 1 HETATM 39 C C7N NDP . . . C 3 65.58 28.125 31.85 1 29.79 ? C7N NDP 486 A 1 HETATM 40 O O7N NDP . . . C 3 66.593 27.211 31.455 1 34.47 ? O7N NDP 486 A 1 HETATM 41 N N7N NDP . . . C 3 65.323 28.108 33.136 1 29.86 ? N7N NDP 486 A 1 HETATM 42 C C4N NDP . . . C 3 65.335 28.844 29.467 1 28.38 ? C4N NDP 486 A 1 HETATM 43 C C5N NDP . . . C 3 64.692 29.626 28.506 1 26.42 ? C5N NDP 486 A 1 HETATM 44 C C6N NDP . . . C 3 63.683 30.503 28.867 1 25.71 ? C6N NDP 486 A 1 HETATM 45 P P2B NDP . . . C 3 68.777 34.62 26.88 1 32.65 ? P2B NDP 486 A 1 HETATM 46 O O1X NDP . . . C 3 68.928 36.056 27.156 1 41.37 ? O1X NDP 486 A 1 HETATM 47 O O2X NDP . . . C 3 69.139 34.121 25.537 1 37.8 ? O2X NDP 486 A 1 HETATM 48 O O3X NDP . . . C 3 69.696 33.89 27.926 1 42.38 ? O3X NDP 486 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #