data_2CB3
#
_model_server_result.job_id            7kuAwB8saGdIOMo_IHxDAQ 
_model_server_result.datetime_utc      '2024-11-18 12:46:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2cb3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1344}' 
#
_entry.id    2CB3 
#
_exptl.entry_id    2CB3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2CB3 
_cell.length_a            217.53 
_cell.length_b            217.53 
_cell.length_c            217.53 
_cell.Z_PDB               96 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2CB3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        197 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PQS monomeric 1 author_and_software_defined_assembly 2 
PQS monomeric 1 author_and_software_defined_assembly 3 
PQS monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,J 1 1 
B,G,K 2 1 
C,H,L 3 1 
D,I,M 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     2CB3 
_atom_sites.fract_transf_matrix[1][1]    0.004597 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004597 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004597 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 GOL A 1 1344 1344 GOL GOL . 
F 3 MLD A 1 1345 1345 MLD MLD . 
G 3 MLD B 1 1344 1344 MLD MLD . 
H 3 MLD C 1 1344 1344 MLD MLD . 
I 3 MLD D 1 1344 1344 MLD MLD . 
J 4 HOH A 1 2001 2001 HOH HOH . 
J 4 HOH A 2 2002 2002 HOH HOH . 
J 4 HOH A 3 2003 2003 HOH HOH . 
J 4 HOH A 4 2004 2004 HOH HOH . 
J 4 HOH A 5 2005 2005 HOH HOH . 
J 4 HOH A 6 2006 2006 HOH HOH . 
J 4 HOH A 7 2007 2007 HOH HOH . 
J 4 HOH A 8 2008 2008 HOH HOH . 
J 4 HOH A 9 2009 2009 HOH HOH . 
J 4 HOH A 10 2010 2010 HOH HOH . 
J 4 HOH A 11 2011 2011 HOH HOH . 
J 4 HOH A 12 2012 2012 HOH HOH . 
J 4 HOH A 13 2013 2013 HOH HOH . 
J 4 HOH A 14 2014 2014 HOH HOH . 
J 4 HOH A 15 2015 2015 HOH HOH . 
J 4 HOH A 16 2016 2016 HOH HOH . 
J 4 HOH A 17 2017 2017 HOH HOH . 
J 4 HOH A 18 2018 2018 HOH HOH . 
J 4 HOH A 19 2019 2019 HOH HOH . 
J 4 HOH A 20 2020 2020 HOH HOH . 
J 4 HOH A 21 2021 2021 HOH HOH . 
J 4 HOH A 22 2022 2022 HOH HOH . 
J 4 HOH A 23 2023 2023 HOH HOH . 
J 4 HOH A 24 2024 2024 HOH HOH . 
J 4 HOH A 25 2025 2025 HOH HOH . 
J 4 HOH A 26 2026 2026 HOH HOH . 
J 4 HOH A 27 2027 2027 HOH HOH . 
J 4 HOH A 28 2028 2028 HOH HOH . 
J 4 HOH A 29 2029 2029 HOH HOH . 
J 4 HOH A 30 2030 2030 HOH HOH . 
J 4 HOH A 31 2031 2031 HOH HOH . 
J 4 HOH A 32 2032 2032 HOH HOH . 
J 4 HOH A 33 2033 2033 HOH HOH . 
J 4 HOH A 34 2034 2034 HOH HOH . 
J 4 HOH A 35 2035 2035 HOH HOH . 
J 4 HOH A 36 2036 2036 HOH HOH . 
J 4 HOH A 37 2037 2037 HOH HOH . 
J 4 HOH A 38 2038 2038 HOH HOH . 
J 4 HOH A 39 2039 2039 HOH HOH . 
J 4 HOH A 40 2040 2040 HOH HOH . 
J 4 HOH A 41 2041 2041 HOH HOH . 
J 4 HOH A 42 2042 2042 HOH HOH . 
J 4 HOH A 43 2043 2043 HOH HOH . 
J 4 HOH A 44 2044 2044 HOH HOH . 
J 4 HOH A 45 2045 2045 HOH HOH . 
J 4 HOH A 46 2046 2046 HOH HOH . 
J 4 HOH A 47 2047 2047 HOH HOH . 
J 4 HOH A 48 2048 2048 HOH HOH . 
J 4 HOH A 49 2049 2049 HOH HOH . 
J 4 HOH A 50 2050 2050 HOH HOH . 
J 4 HOH A 51 2051 2051 HOH HOH . 
J 4 HOH A 52 2052 2052 HOH HOH . 
J 4 HOH A 53 2053 2053 HOH HOH . 
J 4 HOH A 54 2054 2054 HOH HOH . 
K 4 HOH B 1 2001 2001 HOH HOH . 
K 4 HOH B 2 2002 2002 HOH HOH . 
K 4 HOH B 3 2003 2003 HOH HOH . 
K 4 HOH B 4 2004 2004 HOH HOH . 
K 4 HOH B 5 2005 2005 HOH HOH . 
K 4 HOH B 6 2006 2006 HOH HOH . 
K 4 HOH B 7 2007 2007 HOH HOH . 
K 4 HOH B 8 2008 2008 HOH HOH . 
K 4 HOH B 9 2009 2009 HOH HOH . 
K 4 HOH B 10 2010 2010 HOH HOH . 
K 4 HOH B 11 2011 2011 HOH HOH . 
K 4 HOH B 12 2012 2012 HOH HOH . 
K 4 HOH B 13 2013 2013 HOH HOH . 
K 4 HOH B 14 2014 2014 HOH HOH . 
K 4 HOH B 15 2015 2015 HOH HOH . 
K 4 HOH B 16 2016 2016 HOH HOH . 
K 4 HOH B 17 2017 2017 HOH HOH . 
K 4 HOH B 18 2018 2018 HOH HOH . 
K 4 HOH B 19 2019 2019 HOH HOH . 
K 4 HOH B 20 2020 2020 HOH HOH . 
K 4 HOH B 21 2021 2021 HOH HOH . 
K 4 HOH B 22 2022 2022 HOH HOH . 
K 4 HOH B 23 2023 2023 HOH HOH . 
K 4 HOH B 24 2024 2024 HOH HOH . 
K 4 HOH B 25 2025 2025 HOH HOH . 
K 4 HOH B 26 2026 2026 HOH HOH . 
K 4 HOH B 27 2027 2027 HOH HOH . 
K 4 HOH B 28 2028 2028 HOH HOH . 
K 4 HOH B 29 2029 2029 HOH HOH . 
K 4 HOH B 30 2030 2030 HOH HOH . 
K 4 HOH B 31 2031 2031 HOH HOH . 
K 4 HOH B 32 2032 2032 HOH HOH . 
K 4 HOH B 33 2033 2033 HOH HOH . 
K 4 HOH B 34 2034 2034 HOH HOH . 
K 4 HOH B 35 2035 2035 HOH HOH . 
K 4 HOH B 36 2036 2036 HOH HOH . 
K 4 HOH B 37 2037 2037 HOH HOH . 
K 4 HOH B 38 2038 2038 HOH HOH . 
K 4 HOH B 39 2039 2039 HOH HOH . 
K 4 HOH B 40 2040 2040 HOH HOH . 
K 4 HOH B 41 2041 2041 HOH HOH . 
K 4 HOH B 42 2042 2042 HOH HOH . 
K 4 HOH B 43 2043 2043 HOH HOH . 
K 4 HOH B 44 2044 2044 HOH HOH . 
K 4 HOH B 45 2045 2045 HOH HOH . 
K 4 HOH B 46 2046 2046 HOH HOH . 
K 4 HOH B 47 2047 2047 HOH HOH . 
K 4 HOH B 48 2048 2048 HOH HOH . 
K 4 HOH B 49 2049 2049 HOH HOH . 
K 4 HOH B 50 2050 2050 HOH HOH . 
K 4 HOH B 51 2051 2051 HOH HOH . 
K 4 HOH B 52 2052 2052 HOH HOH . 
K 4 HOH B 53 2053 2053 HOH HOH . 
K 4 HOH B 54 2054 2054 HOH HOH . 
K 4 HOH B 55 2055 2055 HOH HOH . 
K 4 HOH B 56 2056 2056 HOH HOH . 
K 4 HOH B 57 2057 2057 HOH HOH . 
K 4 HOH B 58 2058 2058 HOH HOH . 
K 4 HOH B 59 2059 2059 HOH HOH . 
K 4 HOH B 60 2060 2060 HOH HOH . 
K 4 HOH B 61 2061 2061 HOH HOH . 
K 4 HOH B 62 2062 2062 HOH HOH . 
K 4 HOH B 63 2063 2063 HOH HOH . 
L 4 HOH C 1 2001 2001 HOH HOH . 
L 4 HOH C 2 2002 2002 HOH HOH . 
L 4 HOH C 3 2003 2003 HOH HOH . 
L 4 HOH C 4 2004 2004 HOH HOH . 
L 4 HOH C 5 2005 2005 HOH HOH . 
L 4 HOH C 6 2006 2006 HOH HOH . 
L 4 HOH C 7 2007 2007 HOH HOH . 
L 4 HOH C 8 2008 2008 HOH HOH . 
L 4 HOH C 9 2009 2009 HOH HOH . 
L 4 HOH C 10 2010 2010 HOH HOH . 
L 4 HOH C 11 2011 2011 HOH HOH . 
L 4 HOH C 12 2012 2012 HOH HOH . 
L 4 HOH C 13 2013 2013 HOH HOH . 
L 4 HOH C 14 2014 2014 HOH HOH . 
L 4 HOH C 15 2015 2015 HOH HOH . 
L 4 HOH C 16 2016 2016 HOH HOH . 
L 4 HOH C 17 2017 2017 HOH HOH . 
L 4 HOH C 18 2018 2018 HOH HOH . 
L 4 HOH C 19 2019 2019 HOH HOH . 
L 4 HOH C 20 2020 2020 HOH HOH . 
L 4 HOH C 21 2021 2021 HOH HOH . 
L 4 HOH C 22 2022 2022 HOH HOH . 
L 4 HOH C 23 2023 2023 HOH HOH . 
L 4 HOH C 24 2024 2024 HOH HOH . 
L 4 HOH C 25 2025 2025 HOH HOH . 
L 4 HOH C 26 2026 2026 HOH HOH . 
L 4 HOH C 27 2027 2027 HOH HOH . 
L 4 HOH C 28 2028 2028 HOH HOH . 
L 4 HOH C 29 2029 2029 HOH HOH . 
L 4 HOH C 30 2030 2030 HOH HOH . 
L 4 HOH C 31 2031 2031 HOH HOH . 
L 4 HOH C 32 2032 2032 HOH HOH . 
L 4 HOH C 33 2033 2033 HOH HOH . 
L 4 HOH C 34 2034 2034 HOH HOH . 
L 4 HOH C 35 2035 2035 HOH HOH . 
L 4 HOH C 36 2036 2036 HOH HOH . 
L 4 HOH C 37 2037 2037 HOH HOH . 
L 4 HOH C 38 2038 2038 HOH HOH . 
L 4 HOH C 39 2039 2039 HOH HOH . 
L 4 HOH C 40 2040 2040 HOH HOH . 
L 4 HOH C 41 2041 2041 HOH HOH . 
L 4 HOH C 42 2042 2042 HOH HOH . 
L 4 HOH C 43 2043 2043 HOH HOH . 
L 4 HOH C 44 2044 2044 HOH HOH . 
L 4 HOH C 45 2045 2045 HOH HOH . 
L 4 HOH C 46 2046 2046 HOH HOH . 
L 4 HOH C 47 2047 2047 HOH HOH . 
L 4 HOH C 48 2048 2048 HOH HOH . 
L 4 HOH C 49 2049 2049 HOH HOH . 
L 4 HOH C 50 2050 2050 HOH HOH . 
M 4 HOH D 1 2001 2001 HOH HOH . 
M 4 HOH D 2 2002 2002 HOH HOH . 
M 4 HOH D 3 2003 2003 HOH HOH . 
M 4 HOH D 4 2004 2004 HOH HOH . 
M 4 HOH D 5 2005 2005 HOH HOH . 
M 4 HOH D 6 2006 2006 HOH HOH . 
M 4 HOH D 7 2007 2007 HOH HOH . 
M 4 HOH D 8 2008 2008 HOH HOH . 
M 4 HOH D 9 2009 2009 HOH HOH . 
M 4 HOH D 10 2010 2010 HOH HOH . 
M 4 HOH D 11 2011 2011 HOH HOH . 
M 4 HOH D 12 2012 2012 HOH HOH . 
M 4 HOH D 13 2013 2013 HOH HOH . 
M 4 HOH D 14 2014 2014 HOH HOH . 
M 4 HOH D 15 2015 2015 HOH HOH . 
M 4 HOH D 16 2016 2016 HOH HOH . 
M 4 HOH D 17 2017 2017 HOH HOH . 
M 4 HOH D 18 2018 2018 HOH HOH . 
M 4 HOH D 19 2019 2019 HOH HOH . 
M 4 HOH D 20 2020 2020 HOH HOH . 
M 4 HOH D 21 2021 2021 HOH HOH . 
M 4 HOH D 22 2022 2022 HOH HOH . 
M 4 HOH D 23 2023 2023 HOH HOH . 
M 4 HOH D 24 2024 2024 HOH HOH . 
M 4 HOH D 25 2025 2025 HOH HOH . 
M 4 HOH D 26 2026 2026 HOH HOH . 
M 4 HOH D 27 2027 2027 HOH HOH . 
M 4 HOH D 28 2028 2028 HOH HOH . 
M 4 HOH D 29 2029 2029 HOH HOH . 
M 4 HOH D 30 2030 2030 HOH HOH . 
M 4 HOH D 31 2031 2031 HOH HOH . 
M 4 HOH D 32 2032 2032 HOH HOH . 
M 4 HOH D 33 2033 2033 HOH HOH . 
M 4 HOH D 34 2034 2034 HOH HOH . 
M 4 HOH D 35 2035 2035 HOH HOH . 
M 4 HOH D 36 2036 2036 HOH HOH . 
M 4 HOH D 37 2037 2037 HOH HOH . 
M 4 HOH D 38 2038 2038 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 2 -12.159 -64.888 -61.025 1 55 ? C1 GOL 1344 A 1 
HETATM 2 O O1 GOL . . . E 2 -10.918 -65.436 -61.431 1 57.65 ? O1 GOL 1344 A 1 
HETATM 3 C C2 GOL . . . E 2 -12.783 -64.217 -62.211 1 55.38 ? C2 GOL 1344 A 1 
HETATM 4 O O2 GOL . . . E 2 -12.998 -65.233 -63.211 1 49.64 ? O2 GOL 1344 A 1 
HETATM 5 C C3 GOL . . . E 2 -14.097 -63.601 -61.781 1 56.73 ? C3 GOL 1344 A 1 
HETATM 6 O O3 GOL . . . E 2 -14.703 -62.932 -62.878 1 60.19 ? O3 GOL 1344 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           389 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           6 
#