data_2CBF # _model_server_result.job_id eKQBWWg1rJXtHUs-cvZlOw _model_server_result.datetime_utc '2024-12-26 21:00:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2cbf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 2CBF # _exptl.entry_id 2CBF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2CBF _cell.length_a 80.04 _cell.length_b 80.04 _cell.length_c 77.96 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CBF _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 51.973333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 275 n n N HN1 SAH sing 276 n n N HN2 SAH sing 277 n n CA CB SAH sing 278 n n CA C SAH sing 279 n n CA HA SAH sing 280 n n CB CG SAH sing 281 n n CB HB1 SAH sing 282 n n CB HB2 SAH sing 283 n n CG SD SAH sing 284 n n CG HG1 SAH sing 285 n n CG HG2 SAH sing 286 n n SD C5' SAH sing 287 n n C O SAH doub 288 n n C OXT SAH sing 289 n n OXT HXT SAH sing 290 n n C5' C4' SAH sing 291 n n C5' "H5'1" SAH sing 292 n n C5' "H5'2" SAH sing 293 n n C4' O4' SAH sing 294 n n C4' C3' SAH sing 295 n n C4' H4' SAH sing 296 n n O4' C1' SAH sing 297 n n C3' O3' SAH sing 298 n n C3' C2' SAH sing 299 n n C3' H3' SAH sing 300 n n O3' HO3' SAH sing 301 n n C2' O2' SAH sing 302 n n C2' C1' SAH sing 303 n n C2' H2' SAH sing 304 n n O2' HO2' SAH sing 305 n n C1' N9 SAH sing 306 n n C1' H1' SAH sing 307 n n N9 C8 SAH sing 308 n y N9 C4 SAH sing 309 n y C8 N7 SAH doub 310 n y C8 H8 SAH sing 311 n n N7 C5 SAH sing 312 n y C5 C6 SAH sing 313 n y C5 C4 SAH doub 314 n y C6 N6 SAH sing 315 n n C6 N1 SAH doub 316 n y N6 HN61 SAH sing 317 n n N6 HN62 SAH sing 318 n n N1 C2 SAH sing 319 n y C2 N3 SAH doub 320 n y C2 H2 SAH sing 321 n n N3 C4 SAH sing 322 n y # _atom_sites.entry_id 2CBF _atom_sites.fract_transf_matrix[1][1] 0.012494 _atom_sites.fract_transf_matrix[1][2] 0.007213 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014427 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012827 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id SAH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 300 _pdbx_nonpoly_scheme.auth_seq_num 300 _pdbx_nonpoly_scheme.pdb_mon_id SAH _pdbx_nonpoly_scheme.auth_mon_id SAH _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 -11.8 34.985 20.12 1 22.69 ? N SAH 300 A 1 HETATM 2 C CA SAH . . . B 2 -12.651 34.3 19.13 1 21.95 ? CA SAH 300 A 1 HETATM 3 C CB SAH . . . B 2 -11.943 33.56 17.974 1 21.92 ? CB SAH 300 A 1 HETATM 4 C CG SAH . . . B 2 -10.83 34.183 17.169 1 17.28 ? CG SAH 300 A 1 HETATM 5 S SD SAH . . . B 2 -9.95 32.906 16.329 1 26.05 ? SD SAH 300 A 1 HETATM 6 C C SAH . . . B 2 -14.012 33.853 19.616 1 27.64 ? C SAH 300 A 1 HETATM 7 O O SAH . . . B 2 -14.097 33.844 20.808 1 22.63 ? O SAH 300 A 1 HETATM 8 O OXT SAH . . . B 2 -15.007 33.491 18.943 1 24.82 ? OXT SAH 300 A 1 HETATM 9 C C5' SAH . . . B 2 -11.065 33.261 14.831 1 19 ? C5' SAH 300 A 1 HETATM 10 C C4' SAH . . . B 2 -11.759 31.967 14.532 1 23.23 ? C4' SAH 300 A 1 HETATM 11 O O4' SAH . . . B 2 -12.967 32.126 15.337 1 24.39 ? O4' SAH 300 A 1 HETATM 12 C C3' SAH . . . B 2 -12.271 31.598 13.149 1 23.72 ? C3' SAH 300 A 1 HETATM 13 O O3' SAH . . . B 2 -11.443 30.493 12.519 1 20.69 ? O3' SAH 300 A 1 HETATM 14 C C2' SAH . . . B 2 -13.556 30.764 13.412 1 22.28 ? C2' SAH 300 A 1 HETATM 15 O O2' SAH . . . B 2 -12.936 29.492 13.728 1 21.15 ? O2' SAH 300 A 1 HETATM 16 C C1' SAH . . . B 2 -13.981 31.492 14.629 1 22.49 ? C1' SAH 300 A 1 HETATM 17 N N9 SAH . . . B 2 -14.919 32.466 14.514 1 22.88 ? N9 SAH 300 A 1 HETATM 18 C C8 SAH . . . B 2 -15.051 33.609 15.158 1 18.4 ? C8 SAH 300 A 1 HETATM 19 N N7 SAH . . . B 2 -16.03 34.363 14.525 1 18.36 ? N7 SAH 300 A 1 HETATM 20 C C5 SAH . . . B 2 -16.821 33.492 14.01 1 21.07 ? C5 SAH 300 A 1 HETATM 21 C C6 SAH . . . B 2 -18.155 33.452 13.549 1 23.9 ? C6 SAH 300 A 1 HETATM 22 N N6 SAH . . . B 2 -18.997 34.41 13.703 1 22.07 ? N6 SAH 300 A 1 HETATM 23 N N1 SAH . . . B 2 -18.71 32.411 12.971 1 23.77 ? N1 SAH 300 A 1 HETATM 24 C C2 SAH . . . B 2 -18.095 31.253 13.312 1 21.45 ? C2 SAH 300 A 1 HETATM 25 N N3 SAH . . . B 2 -16.854 31.201 13.781 1 22.61 ? N3 SAH 300 A 1 HETATM 26 C C4 SAH . . . B 2 -16.151 32.356 13.938 1 22.81 ? C4 SAH 300 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 26 #