data_2CBQ
#
_model_server_result.job_id            3i4b9cK-fcVyAMc2g6ST5w 
_model_server_result.datetime_utc      '2025-01-11 17:51:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2cbq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1117}' 
#
_entry.id    2CBQ 
#
_exptl.entry_id    2CBQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              388.497 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'TESTOSTERONE HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2CBQ 
_cell.length_a            52.976 
_cell.length_b            97.827 
_cell.length_c            129.268 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2CBQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS dimeric 2 author_and_software_defined_assembly 1 
PQS dimeric 2 author_and_software_defined_assembly 2 
PQS dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,G,H,I,M,N,T,V 1 1 
B,F,J,K,L,R,S,U,Y 2 1 
D,E,O,P,Q,W,X 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 I N N 
? 3 K N N 
? 3 L N N 
? 3 N N N 
? 3 O N N 
? 3 Q N N 
? 3 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 88 A CYS 88 1_555 A SG CYS 93 A CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 B SG CYS 88 B CYS 88 1_555 B SG CYS 93 B CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf3 C SG CYS 88 C CYS 88 1_555 C SG CYS 93 C CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf4 D SG CYS 88 D CYS 88 1_555 D SG CYS 93 D CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf5 E SG CYS 88 E CYS 88 1_555 E SG CYS 93 E CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 F SG CYS 88 F CYS 88 1_555 F SG CYS 93 F CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
#
_chem_comp.formula           'C23 H32 O5' 
_chem_comp.formula_weight    388.497 
_chem_comp.id                TH2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'TESTOSTERONE HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     '4-OXO-4-{[(8ALPHA,9BETA,10ALPHA,13ALPHA,14BETA,17ALPHA)-3-OXOANDROST-4-EN-17-YL]OXY}BUTANOIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 TH2 sing 275 n n 
C1 C10 TH2 sing 276 n n 
C1 H1C1 TH2 sing 277 n n 
C1 H1C2 TH2 sing 278 n n 
C2 C3 TH2 sing 279 n n 
C2 H2C1 TH2 sing 280 n n 
C2 H2C2 TH2 sing 281 n n 
C3 O3 TH2 doub 282 n n 
C3 C4 TH2 sing 283 n n 
C4 C5 TH2 doub 284 n n 
C4 H4 TH2 sing 285 n n 
C5 C6 TH2 sing 286 n n 
C5 C10 TH2 sing 287 n n 
C6 C7 TH2 sing 288 n n 
C6 H6C1 TH2 sing 289 n n 
C6 H6C2 TH2 sing 290 n n 
C7 C8 TH2 sing 291 n n 
C7 H7C1 TH2 sing 292 n n 
C7 H7C2 TH2 sing 293 n n 
C8 C9 TH2 sing 294 n n 
C8 C14 TH2 sing 295 n n 
C8 H8 TH2 sing 296 n n 
C9 C10 TH2 sing 297 n n 
C9 C11 TH2 sing 298 n n 
C9 H9 TH2 sing 299 n n 
C10 C19 TH2 sing 300 n n 
C11 C12 TH2 sing 301 n n 
C11 H111 TH2 sing 302 n n 
C11 H112 TH2 sing 303 n n 
C12 C13 TH2 sing 304 n n 
C12 H121 TH2 sing 305 n n 
C12 H122 TH2 sing 306 n n 
C13 C14 TH2 sing 307 n n 
C13 C17 TH2 sing 308 n n 
C13 C18 TH2 sing 309 n n 
C14 C15 TH2 sing 310 n n 
C14 H14 TH2 sing 311 n n 
C15 C16 TH2 sing 312 n n 
C15 H151 TH2 sing 313 n n 
C15 H152 TH2 sing 314 n n 
C16 C17 TH2 sing 315 n n 
C16 H161 TH2 sing 316 n n 
C16 H162 TH2 sing 317 n n 
C17 O17 TH2 sing 318 n n 
C17 H17 TH2 sing 319 n n 
O17 C20 TH2 sing 320 n n 
C18 H181 TH2 sing 321 n n 
C18 H182 TH2 sing 322 n n 
C18 H183 TH2 sing 323 n n 
C20 O20 TH2 doub 324 n n 
C20 C22 TH2 sing 325 n n 
C21 C22 TH2 sing 326 n n 
C21 C23 TH2 sing 327 n n 
C21 H211 TH2 sing 328 n n 
C21 H212 TH2 sing 329 n n 
C22 H221 TH2 sing 330 n n 
C22 H222 TH2 sing 331 n n 
C23 O23 TH2 doub 332 n n 
C23 O24 TH2 sing 333 n n 
O24 H24 TH2 sing 334 n n 
C19 H191 TH2 sing 335 n n 
C19 H192 TH2 sing 336 n n 
C19 H193 TH2 sing 337 n n 
#
_atom_sites.entry_id                     2CBQ 
_atom_sites.fract_transf_matrix[1][1]    0.018876 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010222 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007736 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 SO4 A 1 1113 1113 SO4 SO4 . 
H 3 TH2 A 1 1114 1114 TH2 TH2 . 
I 3 TH2 A 1 1115 1115 TH2 TH2 . 
J 2 SO4 B 1 1115 1115 SO4 SO4 . 
K 3 TH2 B 1 1116 1116 TH2 TH2 . 
L 3 TH2 B 1 1117 1117 TH2 TH2 . 
M 2 SO4 C 1 1114 1114 SO4 SO4 . 
N 3 TH2 C 1 1115 1115 TH2 TH2 . 
O 3 TH2 D 1 1114 1114 TH2 TH2 . 
P 2 SO4 E 1 1114 1114 SO4 SO4 . 
Q 3 TH2 E 1 1115 1115 TH2 TH2 . 
R 2 SO4 F 1 1113 1113 SO4 SO4 . 
S 3 TH2 F 1 1114 1114 TH2 TH2 . 
T 4 HOH A 1 2001 2001 HOH HOH . 
T 4 HOH A 2 2002 2002 HOH HOH . 
T 4 HOH A 3 2003 2003 HOH HOH . 
T 4 HOH A 4 2004 2004 HOH HOH . 
T 4 HOH A 5 2005 2005 HOH HOH . 
T 4 HOH A 6 2006 2006 HOH HOH . 
T 4 HOH A 7 2007 2007 HOH HOH . 
T 4 HOH A 8 2008 2008 HOH HOH . 
T 4 HOH A 9 2009 2009 HOH HOH . 
T 4 HOH A 10 2010 2010 HOH HOH . 
T 4 HOH A 11 2011 2011 HOH HOH . 
T 4 HOH A 12 2012 2012 HOH HOH . 
T 4 HOH A 13 2013 2013 HOH HOH . 
T 4 HOH A 14 2014 2014 HOH HOH . 
T 4 HOH A 15 2015 2015 HOH HOH . 
U 4 HOH B 1 2001 2001 HOH HOH . 
U 4 HOH B 2 2002 2002 HOH HOH . 
U 4 HOH B 3 2003 2003 HOH HOH . 
U 4 HOH B 4 2004 2004 HOH HOH . 
U 4 HOH B 5 2005 2005 HOH HOH . 
U 4 HOH B 6 2006 2006 HOH HOH . 
U 4 HOH B 7 2007 2007 HOH HOH . 
U 4 HOH B 8 2008 2008 HOH HOH . 
U 4 HOH B 9 2009 2009 HOH HOH . 
U 4 HOH B 10 2010 2010 HOH HOH . 
U 4 HOH B 11 2011 2011 HOH HOH . 
U 4 HOH B 12 2012 2012 HOH HOH . 
U 4 HOH B 13 2013 2013 HOH HOH . 
U 4 HOH B 14 2014 2014 HOH HOH . 
U 4 HOH B 15 2015 2015 HOH HOH . 
U 4 HOH B 16 2016 2016 HOH HOH . 
U 4 HOH B 17 2017 2017 HOH HOH . 
V 4 HOH C 1 2001 2001 HOH HOH . 
V 4 HOH C 2 2002 2002 HOH HOH . 
V 4 HOH C 3 2003 2003 HOH HOH . 
V 4 HOH C 4 2004 2004 HOH HOH . 
V 4 HOH C 5 2005 2005 HOH HOH . 
V 4 HOH C 6 2006 2006 HOH HOH . 
V 4 HOH C 7 2007 2007 HOH HOH . 
V 4 HOH C 8 2008 2008 HOH HOH . 
V 4 HOH C 9 2009 2009 HOH HOH . 
V 4 HOH C 10 2010 2010 HOH HOH . 
V 4 HOH C 11 2011 2011 HOH HOH . 
V 4 HOH C 12 2012 2012 HOH HOH . 
V 4 HOH C 13 2013 2013 HOH HOH . 
V 4 HOH C 14 2014 2014 HOH HOH . 
V 4 HOH C 15 2015 2015 HOH HOH . 
V 4 HOH C 16 2016 2016 HOH HOH . 
V 4 HOH C 17 2017 2017 HOH HOH . 
W 4 HOH D 1 2001 2001 HOH HOH . 
W 4 HOH D 2 2002 2002 HOH HOH . 
W 4 HOH D 3 2003 2003 HOH HOH . 
W 4 HOH D 4 2004 2004 HOH HOH . 
W 4 HOH D 5 2005 2005 HOH HOH . 
W 4 HOH D 6 2006 2006 HOH HOH . 
W 4 HOH D 7 2007 2007 HOH HOH . 
W 4 HOH D 8 2008 2008 HOH HOH . 
W 4 HOH D 9 2009 2009 HOH HOH . 
W 4 HOH D 10 2010 2010 HOH HOH . 
W 4 HOH D 11 2011 2011 HOH HOH . 
W 4 HOH D 12 2012 2012 HOH HOH . 
W 4 HOH D 13 2013 2013 HOH HOH . 
W 4 HOH D 14 2014 2014 HOH HOH . 
W 4 HOH D 15 2015 2015 HOH HOH . 
W 4 HOH D 16 2016 2016 HOH HOH . 
W 4 HOH D 17 2017 2017 HOH HOH . 
X 4 HOH E 1 2001 2001 HOH HOH . 
X 4 HOH E 2 2002 2002 HOH HOH . 
X 4 HOH E 3 2003 2003 HOH HOH . 
X 4 HOH E 4 2004 2004 HOH HOH . 
X 4 HOH E 5 2005 2005 HOH HOH . 
X 4 HOH E 6 2006 2006 HOH HOH . 
X 4 HOH E 7 2007 2007 HOH HOH . 
X 4 HOH E 8 2008 2008 HOH HOH . 
X 4 HOH E 9 2009 2009 HOH HOH . 
X 4 HOH E 10 2010 2010 HOH HOH . 
X 4 HOH E 11 2011 2011 HOH HOH . 
X 4 HOH E 12 2012 2012 HOH HOH . 
X 4 HOH E 13 2013 2013 HOH HOH . 
X 4 HOH E 14 2014 2014 HOH HOH . 
Y 4 HOH F 1 2001 2001 HOH HOH . 
Y 4 HOH F 2 2002 2002 HOH HOH . 
Y 4 HOH F 3 2003 2003 HOH HOH . 
Y 4 HOH F 4 2004 2004 HOH HOH . 
Y 4 HOH F 5 2005 2005 HOH HOH . 
Y 4 HOH F 6 2006 2006 HOH HOH . 
Y 4 HOH F 7 2007 2007 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 TH2 . . . L 3 3.999 60.494 14.458 1 31.68 ? C1 TH2 1117 B 1 
HETATM 2 C C2 TH2 . . . L 3 3.367 59.303 13.677 1 30.49 ? C2 TH2 1117 B 1 
HETATM 3 C C3 TH2 . . . L 3 3.825 59.212 12.258 1 29.07 ? C3 TH2 1117 B 1 
HETATM 4 O O3 TH2 . . . L 3 3.113 58.977 11.329 1 28.48 ? O3 TH2 1117 B 1 
HETATM 5 C C4 TH2 . . . L 3 5.269 59.351 12.077 1 29.7 ? C4 TH2 1117 B 1 
HETATM 6 C C5 TH2 . . . L 3 6.091 59.907 13.027 1 33.25 ? C5 TH2 1117 B 1 
HETATM 7 C C6 TH2 . . . L 3 7.592 59.978 12.809 1 34.28 ? C6 TH2 1117 B 1 
HETATM 8 C C7 TH2 . . . L 3 8.103 61.41 12.939 1 34.94 ? C7 TH2 1117 B 1 
HETATM 9 C C8 TH2 . . . L 3 7.733 61.943 14.371 1 36.35 ? C8 TH2 1117 B 1 
HETATM 10 C C9 TH2 . . . L 3 6.166 61.927 14.563 1 34.23 ? C9 TH2 1117 B 1 
HETATM 11 C C10 TH2 . . . L 3 5.572 60.464 14.421 1 32.66 ? C10 TH2 1117 B 1 
HETATM 12 C C11 TH2 . . . L 3 5.714 62.484 15.966 1 35.9 ? C11 TH2 1117 B 1 
HETATM 13 C C12 TH2 . . . L 3 6.275 63.93 16.071 1 36.38 ? C12 TH2 1117 B 1 
HETATM 14 C C13 TH2 . . . L 3 7.832 63.972 15.984 1 37.89 ? C13 TH2 1117 B 1 
HETATM 15 C C14 TH2 . . . L 3 8.207 63.406 14.564 1 37.04 ? C14 TH2 1117 B 1 
HETATM 16 C C15 TH2 . . . L 3 9.704 63.662 14.405 1 36.55 ? C15 TH2 1117 B 1 
HETATM 17 C C16 TH2 . . . L 3 9.892 64.995 15.158 1 38.75 ? C16 TH2 1117 B 1 
HETATM 18 C C17 TH2 . . . L 3 8.506 65.369 15.83 1 39.92 ? C17 TH2 1117 B 1 
HETATM 19 O O17 TH2 . . . L 3 8.318 66.42 16.772 1 43.93 ? O17 TH2 1117 B 1 
HETATM 20 C C18 TH2 . . . L 3 8.443 63.24 17.226 1 38.45 ? C18 TH2 1117 B 1 
HETATM 21 C C20 TH2 . . . L 3 9.207 67.171 17.307 1 47.8 ? C20 TH2 1117 B 1 
HETATM 22 O O20 TH2 . . . L 3 10.054 67.963 16.796 1 49.77 ? O20 TH2 1117 B 1 
HETATM 23 C C21 TH2 . . . L 3 8.179 68.161 19.366 1 50.93 ? C21 TH2 1117 B 1 
HETATM 24 C C22 TH2 . . . L 3 9.226 67.146 18.809 1 48.66 ? C22 TH2 1117 B 1 
HETATM 25 C C23 TH2 . . . L 3 8.357 69.585 18.786 1 53.23 ? C23 TH2 1117 B 1 
HETATM 26 O O23 TH2 . . . L 3 7.332 70.119 18.291 1 53.41 ? O23 TH2 1117 B 1 
HETATM 27 O O24 TH2 . . . L 3 9.525 70.125 18.825 1 54.58 ? O24 TH2 1117 B 1 
HETATM 28 C C19 TH2 . . . L 3 6.146 59.567 15.56 1 33.23 ? C19 TH2 1117 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           263 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           28 
#