data_2CC6
#
_model_server_result.job_id            5QZNTV5CItkJaeBB7Id_0A 
_model_server_result.datetime_utc      '2024-11-04 23:26:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2cc6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1068}' 
#
_entry.id    2CC6 
#
_exptl.entry_id    2CC6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              242.233 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            LUMICHROME 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2CC6 
_cell.length_a            141.72 
_cell.length_b            141.72 
_cell.length_c            141.72 
_cell.Z_PDB               96 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2CC6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        210 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'F 41 3 2' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5,6,7,8,9,10,11,12 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 
3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 
4 'crystal symmetry operation' 80_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 
5 'crystal symmetry operation' 59_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 
6 'crystal symmetry operation' 82_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 
7 'crystal symmetry operation' 52_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
8 'crystal symmetry operation' 75_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
9 'crystal symmetry operation' 54_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 
10 'crystal symmetry operation' 36_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 
11 'crystal symmetry operation' 31_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 
12 'crystal symmetry operation' 26_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 14 A GLU 14 1_555 E MG MG . A MG 1066 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc2 A OD2 ASP 41 A ASP 41 80_555 B MG MG . A MG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc3 B MG MG . A MG 102 1_555 H O HOH . A HOH 2048 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc4 B MG MG . A MG 102 1_555 H O HOH . A HOH 2049 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc5 B MG MG . A MG 102 1_555 H O HOH . A HOH 2050 80_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc6 B MG MG . A MG 102 1_555 H O HOH . A HOH 2051 80_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc7 B MG MG . A MG 102 1_555 H O HOH . A HOH 2071 80_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? 
metalc ? metalc8 C NA NA . A NA 104 1_555 H O HOH . A HOH 2008 80_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc9 C NA NA . A NA 104 1_555 H O HOH . A HOH 2008 59_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc10 C NA NA . A NA 104 1_555 H O HOH . A HOH 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc11 C NA NA . A NA 104 1_555 H O HOH . A HOH 2072 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc12 C NA NA . A NA 104 1_555 H O HOH . A HOH 2072 80_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc13 C NA NA . A NA 104 1_555 H O HOH . A HOH 2072 59_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc14 E MG MG . A MG 1066 1_555 H O HOH . A HOH 2020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc15 E MG MG . A MG 1066 1_555 H O HOH . A HOH 2026 24_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc16 E MG MG . A MG 1066 1_555 H O HOH . A HOH 2027 24_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc17 E MG MG . A MG 1066 1_555 H O HOH . A HOH 2033 24_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc18 E MG MG . A MG 1066 1_555 H O HOH . A HOH 2063 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
#
_chem_comp.formula           'C12 H10 N4 O2' 
_chem_comp.formula_weight    242.233 
_chem_comp.id                LUM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              LUMICHROME 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     7,8-DIMETHYLALLOXAZINE;6,7-DIMETHYLALLOXAZINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 LUM sing 160 n y 
N1 C10 LUM sing 161 n y 
N1 HN1 LUM sing 162 n n 
C2 O2 LUM doub 163 n n 
C2 N3 LUM sing 164 n y 
C10 C4A LUM doub 165 n y 
C10 N10 LUM sing 166 n y 
N3 C4 LUM sing 167 n y 
N3 HN3 LUM sing 168 n n 
C4 O4 LUM doub 169 n n 
C4 C4A LUM sing 170 n y 
C4A N5 LUM sing 171 n y 
N5 C5A LUM doub 172 n y 
C5A C6 LUM sing 173 n y 
C5A C9A LUM sing 174 n y 
C6 C7 LUM doub 175 n y 
C6 HC6 LUM sing 176 n n 
C9A C9 LUM sing 177 n y 
C9A N10 LUM doub 178 n y 
C7 C7M LUM sing 179 n n 
C7 C8 LUM sing 180 n y 
C7M H7M1 LUM sing 181 n n 
C7M H7M2 LUM sing 182 n n 
C7M H7M3 LUM sing 183 n n 
C8 C8M LUM sing 184 n n 
C8 C9 LUM doub 185 n y 
C8M H8M1 LUM sing 186 n n 
C8M H8M2 LUM sing 187 n n 
C8M H8M3 LUM sing 188 n n 
C9 HC9 LUM sing 189 n n 
#
_atom_sites.entry_id                     2CC6 
_atom_sites.fract_transf_matrix[1][1]    0.007056 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007056 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007056 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 102 102 MG MG . 
C 3 NA A 1 104 104 NA NA . 
D 4 CL A 1 105 105 CL CL . 
E 2 MG A 1 1066 1066 MG MG . 
F 5 SO4 A 1 1067 1067 SO4 SO4 . 
G 6 LUM A 1 1068 1068 LUM LUM . 
H 7 HOH A 1 2001 2001 HOH HOH . 
H 7 HOH A 2 2002 2002 HOH HOH . 
H 7 HOH A 3 2003 2003 HOH HOH . 
H 7 HOH A 4 2004 2004 HOH HOH . 
H 7 HOH A 5 2005 2005 HOH HOH . 
H 7 HOH A 6 2006 2006 HOH HOH . 
H 7 HOH A 7 2007 2007 HOH HOH . 
H 7 HOH A 8 2008 2008 HOH HOH . 
H 7 HOH A 9 2009 2009 HOH HOH . 
H 7 HOH A 10 2010 2010 HOH HOH . 
H 7 HOH A 11 2011 2011 HOH HOH . 
H 7 HOH A 12 2012 2012 HOH HOH . 
H 7 HOH A 13 2013 2013 HOH HOH . 
H 7 HOH A 14 2014 2014 HOH HOH . 
H 7 HOH A 15 2015 2015 HOH HOH . 
H 7 HOH A 16 2016 2016 HOH HOH . 
H 7 HOH A 17 2017 2017 HOH HOH . 
H 7 HOH A 18 2018 2018 HOH HOH . 
H 7 HOH A 19 2019 2019 HOH HOH . 
H 7 HOH A 20 2020 2020 HOH HOH . 
H 7 HOH A 21 2021 2021 HOH HOH . 
H 7 HOH A 22 2022 2022 HOH HOH . 
H 7 HOH A 23 2023 2023 HOH HOH . 
H 7 HOH A 24 2024 2024 HOH HOH . 
H 7 HOH A 25 2025 2025 HOH HOH . 
H 7 HOH A 26 2026 2026 HOH HOH . 
H 7 HOH A 27 2027 2027 HOH HOH . 
H 7 HOH A 28 2028 2028 HOH HOH . 
H 7 HOH A 29 2029 2029 HOH HOH . 
H 7 HOH A 30 2030 2030 HOH HOH . 
H 7 HOH A 31 2031 2031 HOH HOH . 
H 7 HOH A 32 2032 2032 HOH HOH . 
H 7 HOH A 33 2033 2033 HOH HOH . 
H 7 HOH A 34 2034 2034 HOH HOH . 
H 7 HOH A 35 2035 2035 HOH HOH . 
H 7 HOH A 36 2036 2036 HOH HOH . 
H 7 HOH A 37 2037 2037 HOH HOH . 
H 7 HOH A 38 2038 2038 HOH HOH . 
H 7 HOH A 39 2039 2039 HOH HOH . 
H 7 HOH A 40 2040 2040 HOH HOH . 
H 7 HOH A 41 2041 2041 HOH HOH . 
H 7 HOH A 42 2042 2042 HOH HOH . 
H 7 HOH A 43 2043 2043 HOH HOH . 
H 7 HOH A 44 2044 2044 HOH HOH . 
H 7 HOH A 45 2045 2045 HOH HOH . 
H 7 HOH A 46 2046 2046 HOH HOH . 
H 7 HOH A 47 2047 2047 HOH HOH . 
H 7 HOH A 48 2048 2048 HOH HOH . 
H 7 HOH A 49 2049 2049 HOH HOH . 
H 7 HOH A 50 2050 2050 HOH HOH . 
H 7 HOH A 51 2051 2051 HOH HOH . 
H 7 HOH A 52 2052 2052 HOH HOH . 
H 7 HOH A 53 2053 2053 HOH HOH . 
H 7 HOH A 54 2054 2054 HOH HOH . 
H 7 HOH A 55 2055 2055 HOH HOH . 
H 7 HOH A 56 2056 2056 HOH HOH . 
H 7 HOH A 57 2057 2057 HOH HOH . 
H 7 HOH A 58 2058 2058 HOH HOH . 
H 7 HOH A 59 2059 2059 HOH HOH . 
H 7 HOH A 60 2060 2060 HOH HOH . 
H 7 HOH A 61 2061 2061 HOH HOH . 
H 7 HOH A 62 2062 2062 HOH HOH . 
H 7 HOH A 63 2063 2063 HOH HOH . 
H 7 HOH A 64 2064 2064 HOH HOH . 
H 7 HOH A 65 2065 2065 HOH HOH . 
H 7 HOH A 66 2066 2066 HOH HOH . 
H 7 HOH A 67 2067 2067 HOH HOH . 
H 7 HOH A 68 2068 2068 HOH HOH . 
H 7 HOH A 69 2069 2069 HOH HOH . 
H 7 HOH A 70 2070 2070 HOH HOH . 
H 7 HOH A 71 2071 2071 HOH HOH . 
H 7 HOH A 72 2072 2072 HOH HOH . 
H 7 HOH A 73 2073 2073 HOH HOH . 
H 7 HOH A 74 2074 2074 HOH HOH . 
H 7 HOH A 75 2075 2075 HOH HOH . 
H 7 HOH A 76 2076 2076 HOH HOH . 
H 7 HOH A 77 2077 2077 HOH HOH . 
H 7 HOH A 78 2078 2078 HOH HOH . 
H 7 HOH A 79 2079 2079 HOH HOH . 
H 7 HOH A 80 2080 2080 HOH HOH . 
H 7 HOH A 81 2081 2081 HOH HOH . 
H 7 HOH A 82 2082 2082 HOH HOH . 
H 7 HOH A 83 2083 2083 HOH HOH . 
H 7 HOH A 84 2084 2084 HOH HOH . 
H 7 HOH A 85 2085 2085 HOH HOH . 
H 7 HOH A 86 2086 2086 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 LUM . . . G 6 0.286 22.535 -2.719 1 25.3 ? N1 LUM 1068 A 1 
HETATM 2 C C2 LUM . . . G 6 -0.401 22.215 -3.837 1 25.54 ? C2 LUM 1068 A 1 
HETATM 3 C C10 LUM . . . G 6 0.781 21.558 -1.93 1 24.25 ? C10 LUM 1068 A 1 
HETATM 4 O O2 LUM . . . G 6 -0.858 23.13 -4.557 1 27.4 ? O2 LUM 1068 A 1 
HETATM 5 N N3 LUM . . . G 6 -0.6 20.92 -4.189 1 24.92 ? N3 LUM 1068 A 1 
HETATM 6 C C4 LUM . . . G 6 -0.149 19.876 -3.454 1 25.05 ? C4 LUM 1068 A 1 
HETATM 7 O O4 LUM . . . G 6 -0.383 18.709 -3.846 1 25.47 ? O4 LUM 1068 A 1 
HETATM 8 C C4A LUM . . . G 6 0.57 20.136 -2.292 1 24.35 ? C4A LUM 1068 A 1 
HETATM 9 N N5 LUM . . . G 6 1.081 19.174 -1.487 1 23.82 ? N5 LUM 1068 A 1 
HETATM 10 C C5A LUM . . . G 6 1.768 19.526 -0.364 1 23.86 ? C5A LUM 1068 A 1 
HETATM 11 C C6 LUM . . . G 6 2.294 18.537 0.471 1 24.05 ? C6 LUM 1068 A 1 
HETATM 12 C C9A LUM . . . G 6 1.96 20.87 -0.035 1 23.66 ? C9A LUM 1068 A 1 
HETATM 13 C C7 LUM . . . G 6 3.01 18.886 1.62 1 23.82 ? C7 LUM 1068 A 1 
HETATM 14 C C7M LUM . . . G 6 3.567 17.803 2.512 1 23.68 ? C7M LUM 1068 A 1 
HETATM 15 C C8 LUM . . . G 6 3.197 20.225 1.939 1 23.77 ? C8 LUM 1068 A 1 
HETATM 16 C C8M LUM . . . G 6 3.958 20.627 3.178 1 24.69 ? C8M LUM 1068 A 1 
HETATM 17 C C9 LUM . . . G 6 2.671 21.217 1.114 1 23.88 ? C9 LUM 1068 A 1 
HETATM 18 N N10 LUM . . . G 6 1.469 21.857 -0.815 1 25.06 ? N10 LUM 1068 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           18 
#