data_2CCI # _model_server_result.job_id iuxr0E9ElTKz5asTc1Topw _model_server_result.datetime_utc '2024-11-22 06:42:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2cci # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1297}' # _entry.id 2CCI # _exptl.entry_id 2CCI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2CCI _cell.length_a 74.42 _cell.length_b 114.389 _cell.length_c 170.709 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CCI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS trimeric 3 author_and_software_defined_assembly 1 PQS trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H,K,L,O 1 1 C,D,F,I,J,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 160 A TYR 159 1_555 A N TPO 161 A TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C TPO 161 A TPO 160 1_555 A N HIS 162 A HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 C C TYR 160 C TYR 159 1_555 C N TPO 161 C TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 C C TPO 161 C TPO 160 1_555 C N HIS 162 C HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A OD1 ASN 133 A ASN 132 1_555 H MG MG . A MG 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc2 A OD1 ASP 146 A ASP 145 1_555 H MG MG . A MG 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? metalc ? metalc3 G O3B ATP . A ATP 1297 1_555 H MG MG . A MG 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc4 G O1A ATP . A ATP 1297 1_555 H MG MG . A MG 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? metalc ? metalc5 C ND2 ASN 133 C ASN 132 1_555 J MG MG . C MG 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc6 C OD1 ASN 133 C ASN 132 1_555 J MG MG . C MG 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc7 C OD1 ASP 146 C ASP 145 1_555 J MG MG . C MG 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc8 I O1G ATP . C ATP 1297 1_555 J MG MG . C MG 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? metalc ? metalc9 I O2B ATP . C ATP 1297 1_555 J MG MG . C MG 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.142 ? metalc ? metalc10 I O3G ATP . C ATP 1297 1_555 J MG MG . C MG 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.094 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 2CCI _atom_sites.fract_transf_matrix[1][1] 0.013437 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008742 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005858 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ATP A 1 1297 1297 ATP ATP . H 5 MG A 1 1298 1298 MG MG . I 4 ATP C 1 1297 1297 ATP ATP . J 5 MG C 1 1298 1298 MG MG . K 6 HOH A 1 2001 2001 HOH HOH . K 6 HOH A 2 2002 2002 HOH HOH . K 6 HOH A 3 2003 2003 HOH HOH . K 6 HOH A 4 2004 2004 HOH HOH . K 6 HOH A 5 2005 2005 HOH HOH . K 6 HOH A 6 2006 2006 HOH HOH . K 6 HOH A 7 2007 2007 HOH HOH . K 6 HOH A 8 2008 2008 HOH HOH . K 6 HOH A 9 2009 2009 HOH HOH . K 6 HOH A 10 2010 2010 HOH HOH . K 6 HOH A 11 2011 2011 HOH HOH . K 6 HOH A 12 2012 2012 HOH HOH . K 6 HOH A 13 2013 2013 HOH HOH . K 6 HOH A 14 2014 2014 HOH HOH . K 6 HOH A 15 2015 2015 HOH HOH . K 6 HOH A 16 2016 2016 HOH HOH . K 6 HOH A 17 2017 2017 HOH HOH . K 6 HOH A 18 2018 2018 HOH HOH . K 6 HOH A 19 2019 2019 HOH HOH . K 6 HOH A 20 2020 2020 HOH HOH . K 6 HOH A 21 2021 2021 HOH HOH . K 6 HOH A 22 2022 2022 HOH HOH . K 6 HOH A 23 2023 2023 HOH HOH . K 6 HOH A 24 2024 2024 HOH HOH . K 6 HOH A 25 2025 2025 HOH HOH . K 6 HOH A 26 2026 2026 HOH HOH . K 6 HOH A 27 2027 2027 HOH HOH . K 6 HOH A 28 2028 2028 HOH HOH . K 6 HOH A 29 2029 2029 HOH HOH . K 6 HOH A 30 2030 2030 HOH HOH . K 6 HOH A 31 2031 2031 HOH HOH . K 6 HOH A 32 2032 2032 HOH HOH . K 6 HOH A 33 2033 2033 HOH HOH . K 6 HOH A 34 2034 2034 HOH HOH . K 6 HOH A 35 2035 2035 HOH HOH . K 6 HOH A 36 2036 2036 HOH HOH . K 6 HOH A 37 2037 2037 HOH HOH . K 6 HOH A 38 2038 2038 HOH HOH . K 6 HOH A 39 2039 2039 HOH HOH . K 6 HOH A 40 2040 2040 HOH HOH . K 6 HOH A 41 2041 2041 HOH HOH . K 6 HOH A 42 2042 2042 HOH HOH . K 6 HOH A 43 2043 2043 HOH HOH . K 6 HOH A 44 2044 2044 HOH HOH . L 6 HOH B 1 2001 2001 HOH HOH . L 6 HOH B 2 2002 2002 HOH HOH . L 6 HOH B 3 2003 2003 HOH HOH . L 6 HOH B 4 2004 2004 HOH HOH . L 6 HOH B 5 2005 2005 HOH HOH . L 6 HOH B 6 2006 2006 HOH HOH . L 6 HOH B 7 2007 2007 HOH HOH . L 6 HOH B 8 2008 2008 HOH HOH . L 6 HOH B 9 2009 2009 HOH HOH . L 6 HOH B 10 2010 2010 HOH HOH . L 6 HOH B 11 2011 2011 HOH HOH . L 6 HOH B 12 2012 2012 HOH HOH . L 6 HOH B 13 2013 2013 HOH HOH . L 6 HOH B 14 2014 2014 HOH HOH . L 6 HOH B 15 2015 2015 HOH HOH . L 6 HOH B 16 2016 2016 HOH HOH . L 6 HOH B 17 2017 2017 HOH HOH . L 6 HOH B 18 2018 2018 HOH HOH . L 6 HOH B 19 2019 2019 HOH HOH . L 6 HOH B 20 2020 2020 HOH HOH . L 6 HOH B 21 2021 2021 HOH HOH . L 6 HOH B 22 2022 2022 HOH HOH . L 6 HOH B 23 2023 2023 HOH HOH . M 6 HOH C 1 2001 2001 HOH HOH . M 6 HOH C 2 2002 2002 HOH HOH . M 6 HOH C 3 2003 2003 HOH HOH . M 6 HOH C 4 2004 2004 HOH HOH . M 6 HOH C 5 2005 2005 HOH HOH . M 6 HOH C 6 2006 2006 HOH HOH . M 6 HOH C 7 2007 2007 HOH HOH . M 6 HOH C 8 2008 2008 HOH HOH . M 6 HOH C 9 2009 2009 HOH HOH . M 6 HOH C 10 2010 2010 HOH HOH . M 6 HOH C 11 2011 2011 HOH HOH . M 6 HOH C 12 2012 2012 HOH HOH . M 6 HOH C 13 2013 2013 HOH HOH . M 6 HOH C 14 2014 2014 HOH HOH . M 6 HOH C 15 2015 2015 HOH HOH . M 6 HOH C 16 2016 2016 HOH HOH . M 6 HOH C 17 2017 2017 HOH HOH . M 6 HOH C 18 2018 2018 HOH HOH . M 6 HOH C 19 2019 2019 HOH HOH . M 6 HOH C 20 2020 2020 HOH HOH . M 6 HOH C 21 2021 2021 HOH HOH . M 6 HOH C 22 2022 2022 HOH HOH . N 6 HOH D 1 2001 2001 HOH HOH . N 6 HOH D 2 2002 2002 HOH HOH . N 6 HOH D 3 2003 2003 HOH HOH . N 6 HOH D 4 2004 2004 HOH HOH . N 6 HOH D 5 2005 2005 HOH HOH . N 6 HOH D 6 2006 2006 HOH HOH . N 6 HOH D 7 2007 2007 HOH HOH . N 6 HOH D 8 2008 2008 HOH HOH . N 6 HOH D 9 2009 2009 HOH HOH . N 6 HOH D 10 2010 2010 HOH HOH . N 6 HOH D 11 2011 2011 HOH HOH . N 6 HOH D 12 2012 2012 HOH HOH . O 6 HOH F 1 2001 2001 HOH HOH . O 6 HOH F 2 2002 2002 HOH HOH . O 6 HOH F 3 2003 2003 HOH HOH . O 6 HOH F 4 2004 2004 HOH HOH . O 6 HOH F 5 2005 2005 HOH HOH . O 6 HOH F 6 2006 2006 HOH HOH . O 6 HOH F 7 2007 2007 HOH HOH . P 6 HOH I 1 2001 2001 HOH HOH . P 6 HOH I 2 2002 2002 HOH HOH . P 6 HOH I 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . G 4 19.034 50.982 6.636 1 58.66 ? PG ATP 1297 A 1 HETATM 2 O O1G ATP . . . G 4 17.977 50.638 7.67 1 58.25 ? O1G ATP 1297 A 1 HETATM 3 O O2G ATP . . . G 4 18.936 50.209 5.333 1 58.19 ? O2G ATP 1297 A 1 HETATM 4 O O3G ATP . . . G 4 19.227 52.468 6.437 1 58.62 ? O3G ATP 1297 A 1 HETATM 5 P PB ATP . . . G 4 21.236 51.284 8.422 1 52.74 ? PB ATP 1297 A 1 HETATM 6 O O1B ATP . . . G 4 20.246 52.027 9.276 1 53.48 ? O1B ATP 1297 A 1 HETATM 7 O O2B ATP . . . G 4 22.222 50.376 9.12 1 52.94 ? O2B ATP 1297 A 1 HETATM 8 O O3B ATP . . . G 4 20.42 50.453 7.301 1 55.74 ? O3B ATP 1297 A 1 HETATM 9 P PA ATP . . . G 4 23.143 51.902 6.437 1 46.43 ? PA ATP 1297 A 1 HETATM 10 O O1A ATP . . . G 4 22.872 50.516 5.9 1 46.12 ? O1A ATP 1297 A 1 HETATM 11 O O2A ATP . . . G 4 24.482 52.228 7.054 1 46.38 ? O2A ATP 1297 A 1 HETATM 12 O O3A ATP . . . G 4 22.029 52.346 7.516 1 49.47 ? O3A ATP 1297 A 1 HETATM 13 O O5' ATP . . . G 4 22.832 52.923 5.231 1 44.93 ? O5' ATP 1297 A 1 HETATM 14 C C5' ATP . . . G 4 21.552 52.872 4.601 1 41.55 ? C5' ATP 1297 A 1 HETATM 15 C C4' ATP . . . G 4 21.616 53.33 3.153 1 39.22 ? C4' ATP 1297 A 1 HETATM 16 O O4' ATP . . . G 4 22.377 54.534 3.038 1 37.76 ? O4' ATP 1297 A 1 HETATM 17 C C3' ATP . . . G 4 22.279 52.317 2.229 1 37.93 ? C3' ATP 1297 A 1 HETATM 18 O O3' ATP . . . G 4 21.337 51.388 1.677 1 38.76 ? O3' ATP 1297 A 1 HETATM 19 C C2' ATP . . . G 4 22.885 53.187 1.15 1 36.82 ? C2' ATP 1297 A 1 HETATM 20 O O2' ATP . . . G 4 21.928 53.413 0.108 1 35.31 ? O2' ATP 1297 A 1 HETATM 21 C C1' ATP . . . G 4 23.174 54.508 1.846 1 36.21 ? C1' ATP 1297 A 1 HETATM 22 N N9 ATP . . . G 4 24.614 54.624 2.199 1 35.76 ? N9 ATP 1297 A 1 HETATM 23 C C8 ATP . . . G 4 25.146 54.347 3.41 1 35.57 ? C8 ATP 1297 A 1 HETATM 24 N N7 ATP . . . G 4 26.484 54.558 3.427 1 35.16 ? N7 ATP 1297 A 1 HETATM 25 C C5 ATP . . . G 4 26.832 54.988 2.203 1 35.24 ? C5 ATP 1297 A 1 HETATM 26 C C6 ATP . . . G 4 28.095 55.392 1.543 1 35.76 ? C6 ATP 1297 A 1 HETATM 27 N N6 ATP . . . G 4 29.262 55.369 2.233 1 35.82 ? N6 ATP 1297 A 1 HETATM 28 N N1 ATP . . . G 4 28.037 55.78 0.243 1 35.85 ? N1 ATP 1297 A 1 HETATM 29 C C2 ATP . . . G 4 26.868 55.8 -0.438 1 35.6 ? C2 ATP 1297 A 1 HETATM 30 N N3 ATP . . . G 4 25.684 55.446 0.1 1 35.39 ? N3 ATP 1297 A 1 HETATM 31 C C4 ATP . . . G 4 25.6 55.037 1.394 1 35.2 ? C4 ATP 1297 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #