data_2CCI # _model_server_result.job_id 9uGKHmKketdIeJJoL4ndpQ _model_server_result.datetime_utc '2024-11-22 06:04:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2cci # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1297}' # _entry.id 2CCI # _exptl.entry_id 2CCI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2CCI _cell.length_a 74.42 _cell.length_b 114.389 _cell.length_c 170.709 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CCI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS trimeric 3 author_and_software_defined_assembly 1 PQS trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,G,H,K,L,O 1 1 C,D,F,I,J,M,N,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C TYR 160 A TYR 159 1_555 A N TPO 161 A TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C TPO 161 A TPO 160 1_555 A N HIS 162 A HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 C C TYR 160 C TYR 159 1_555 C N TPO 161 C TPO 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale4 C C TPO 161 C TPO 160 1_555 C N HIS 162 C HIS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A OD1 ASN 133 A ASN 132 1_555 H MG MG . A MG 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc2 A OD1 ASP 146 A ASP 145 1_555 H MG MG . A MG 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? metalc ? metalc3 G O3B ATP . A ATP 1297 1_555 H MG MG . A MG 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc4 G O1A ATP . A ATP 1297 1_555 H MG MG . A MG 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? metalc ? metalc5 C ND2 ASN 133 C ASN 132 1_555 J MG MG . C MG 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc6 C OD1 ASN 133 C ASN 132 1_555 J MG MG . C MG 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc7 C OD1 ASP 146 C ASP 145 1_555 J MG MG . C MG 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc8 I O1G ATP . C ATP 1297 1_555 J MG MG . C MG 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.857 ? metalc ? metalc9 I O2B ATP . C ATP 1297 1_555 J MG MG . C MG 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.142 ? metalc ? metalc10 I O3G ATP . C ATP 1297 1_555 J MG MG . C MG 1298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.094 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 2CCI _atom_sites.fract_transf_matrix[1][1] 0.013437 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008742 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005858 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 ATP A 1 1297 1297 ATP ATP . H 5 MG A 1 1298 1298 MG MG . I 4 ATP C 1 1297 1297 ATP ATP . J 5 MG C 1 1298 1298 MG MG . K 6 HOH A 1 2001 2001 HOH HOH . K 6 HOH A 2 2002 2002 HOH HOH . K 6 HOH A 3 2003 2003 HOH HOH . K 6 HOH A 4 2004 2004 HOH HOH . K 6 HOH A 5 2005 2005 HOH HOH . K 6 HOH A 6 2006 2006 HOH HOH . K 6 HOH A 7 2007 2007 HOH HOH . K 6 HOH A 8 2008 2008 HOH HOH . K 6 HOH A 9 2009 2009 HOH HOH . K 6 HOH A 10 2010 2010 HOH HOH . K 6 HOH A 11 2011 2011 HOH HOH . K 6 HOH A 12 2012 2012 HOH HOH . K 6 HOH A 13 2013 2013 HOH HOH . K 6 HOH A 14 2014 2014 HOH HOH . K 6 HOH A 15 2015 2015 HOH HOH . K 6 HOH A 16 2016 2016 HOH HOH . K 6 HOH A 17 2017 2017 HOH HOH . K 6 HOH A 18 2018 2018 HOH HOH . K 6 HOH A 19 2019 2019 HOH HOH . K 6 HOH A 20 2020 2020 HOH HOH . K 6 HOH A 21 2021 2021 HOH HOH . K 6 HOH A 22 2022 2022 HOH HOH . K 6 HOH A 23 2023 2023 HOH HOH . K 6 HOH A 24 2024 2024 HOH HOH . K 6 HOH A 25 2025 2025 HOH HOH . K 6 HOH A 26 2026 2026 HOH HOH . K 6 HOH A 27 2027 2027 HOH HOH . K 6 HOH A 28 2028 2028 HOH HOH . K 6 HOH A 29 2029 2029 HOH HOH . K 6 HOH A 30 2030 2030 HOH HOH . K 6 HOH A 31 2031 2031 HOH HOH . K 6 HOH A 32 2032 2032 HOH HOH . K 6 HOH A 33 2033 2033 HOH HOH . K 6 HOH A 34 2034 2034 HOH HOH . K 6 HOH A 35 2035 2035 HOH HOH . K 6 HOH A 36 2036 2036 HOH HOH . K 6 HOH A 37 2037 2037 HOH HOH . K 6 HOH A 38 2038 2038 HOH HOH . K 6 HOH A 39 2039 2039 HOH HOH . K 6 HOH A 40 2040 2040 HOH HOH . K 6 HOH A 41 2041 2041 HOH HOH . K 6 HOH A 42 2042 2042 HOH HOH . K 6 HOH A 43 2043 2043 HOH HOH . K 6 HOH A 44 2044 2044 HOH HOH . L 6 HOH B 1 2001 2001 HOH HOH . L 6 HOH B 2 2002 2002 HOH HOH . L 6 HOH B 3 2003 2003 HOH HOH . L 6 HOH B 4 2004 2004 HOH HOH . L 6 HOH B 5 2005 2005 HOH HOH . L 6 HOH B 6 2006 2006 HOH HOH . L 6 HOH B 7 2007 2007 HOH HOH . L 6 HOH B 8 2008 2008 HOH HOH . L 6 HOH B 9 2009 2009 HOH HOH . L 6 HOH B 10 2010 2010 HOH HOH . L 6 HOH B 11 2011 2011 HOH HOH . L 6 HOH B 12 2012 2012 HOH HOH . L 6 HOH B 13 2013 2013 HOH HOH . L 6 HOH B 14 2014 2014 HOH HOH . L 6 HOH B 15 2015 2015 HOH HOH . L 6 HOH B 16 2016 2016 HOH HOH . L 6 HOH B 17 2017 2017 HOH HOH . L 6 HOH B 18 2018 2018 HOH HOH . L 6 HOH B 19 2019 2019 HOH HOH . L 6 HOH B 20 2020 2020 HOH HOH . L 6 HOH B 21 2021 2021 HOH HOH . L 6 HOH B 22 2022 2022 HOH HOH . L 6 HOH B 23 2023 2023 HOH HOH . M 6 HOH C 1 2001 2001 HOH HOH . M 6 HOH C 2 2002 2002 HOH HOH . M 6 HOH C 3 2003 2003 HOH HOH . M 6 HOH C 4 2004 2004 HOH HOH . M 6 HOH C 5 2005 2005 HOH HOH . M 6 HOH C 6 2006 2006 HOH HOH . M 6 HOH C 7 2007 2007 HOH HOH . M 6 HOH C 8 2008 2008 HOH HOH . M 6 HOH C 9 2009 2009 HOH HOH . M 6 HOH C 10 2010 2010 HOH HOH . M 6 HOH C 11 2011 2011 HOH HOH . M 6 HOH C 12 2012 2012 HOH HOH . M 6 HOH C 13 2013 2013 HOH HOH . M 6 HOH C 14 2014 2014 HOH HOH . M 6 HOH C 15 2015 2015 HOH HOH . M 6 HOH C 16 2016 2016 HOH HOH . M 6 HOH C 17 2017 2017 HOH HOH . M 6 HOH C 18 2018 2018 HOH HOH . M 6 HOH C 19 2019 2019 HOH HOH . M 6 HOH C 20 2020 2020 HOH HOH . M 6 HOH C 21 2021 2021 HOH HOH . M 6 HOH C 22 2022 2022 HOH HOH . N 6 HOH D 1 2001 2001 HOH HOH . N 6 HOH D 2 2002 2002 HOH HOH . N 6 HOH D 3 2003 2003 HOH HOH . N 6 HOH D 4 2004 2004 HOH HOH . N 6 HOH D 5 2005 2005 HOH HOH . N 6 HOH D 6 2006 2006 HOH HOH . N 6 HOH D 7 2007 2007 HOH HOH . N 6 HOH D 8 2008 2008 HOH HOH . N 6 HOH D 9 2009 2009 HOH HOH . N 6 HOH D 10 2010 2010 HOH HOH . N 6 HOH D 11 2011 2011 HOH HOH . N 6 HOH D 12 2012 2012 HOH HOH . O 6 HOH F 1 2001 2001 HOH HOH . O 6 HOH F 2 2002 2002 HOH HOH . O 6 HOH F 3 2003 2003 HOH HOH . O 6 HOH F 4 2004 2004 HOH HOH . O 6 HOH F 5 2005 2005 HOH HOH . O 6 HOH F 6 2006 2006 HOH HOH . O 6 HOH F 7 2007 2007 HOH HOH . P 6 HOH I 1 2001 2001 HOH HOH . P 6 HOH I 2 2002 2002 HOH HOH . P 6 HOH I 3 2003 2003 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . I 4 18.997 26.627 53.948 1 55.72 ? PG ATP 1297 C 1 HETATM 2 O O1G ATP . . . I 4 17.972 25.544 54.197 1 54.8 ? O1G ATP 1297 C 1 HETATM 3 O O2G ATP . . . I 4 19.483 26.695 52.517 1 55.13 ? O2G ATP 1297 C 1 HETATM 4 O O3G ATP . . . I 4 18.591 27.983 54.498 1 56.5 ? O3G ATP 1297 C 1 HETATM 5 P PB ATP . . . I 4 20.268 25.354 56.207 1 48.92 ? PB ATP 1297 C 1 HETATM 6 O O1B ATP . . . I 4 21.286 25.916 57.165 1 48.2 ? O1B ATP 1297 C 1 HETATM 7 O O2B ATP . . . I 4 18.847 25.274 56.708 1 49.03 ? O2B ATP 1297 C 1 HETATM 8 O O3B ATP . . . I 4 20.304 26.208 54.828 1 52.44 ? O3B ATP 1297 C 1 HETATM 9 P PA ATP . . . I 4 20.1 22.916 54.639 1 44.15 ? PA ATP 1297 C 1 HETATM 10 O O1A ATP . . . I 4 18.781 23.479 54.179 1 44.11 ? O1A ATP 1297 C 1 HETATM 11 O O2A ATP . . . I 4 20.11 21.482 55.133 1 44.53 ? O2A ATP 1297 C 1 HETATM 12 O O3A ATP . . . I 4 20.785 23.883 55.752 1 46.67 ? O3A ATP 1297 C 1 HETATM 13 O O5' ATP . . . I 4 21.152 22.985 53.428 1 42.36 ? O5' ATP 1297 C 1 HETATM 14 C C5' ATP . . . I 4 21.468 24.216 52.793 1 39.33 ? C5' ATP 1297 C 1 HETATM 15 C C4' ATP . . . I 4 21.318 24.074 51.293 1 37.09 ? C4' ATP 1297 C 1 HETATM 16 O O4' ATP . . . I 4 22.321 23.171 50.837 1 35.9 ? O4' ATP 1297 C 1 HETATM 17 C C3' ATP . . . I 4 19.98 23.486 50.877 1 36.48 ? C3' ATP 1297 C 1 HETATM 18 O O3' ATP . . . I 4 19.073 24.523 50.498 1 37.88 ? O3' ATP 1297 C 1 HETATM 19 C C2' ATP . . . I 4 20.323 22.599 49.7 1 35.86 ? C2' ATP 1297 C 1 HETATM 20 O O2' ATP . . . I 4 20.172 23.305 48.464 1 35.96 ? O2' ATP 1297 C 1 HETATM 21 C C1' ATP . . . I 4 21.788 22.245 49.895 1 34.55 ? C1' ATP 1297 C 1 HETATM 22 N N9 ATP . . . I 4 21.845 20.875 50.458 1 34.06 ? N9 ATP 1297 C 1 HETATM 23 C C8 ATP . . . I 4 21.662 20.552 51.752 1 33.78 ? C8 ATP 1297 C 1 HETATM 24 N N7 ATP . . . I 4 21.756 19.216 51.949 1 33.98 ? N7 ATP 1297 C 1 HETATM 25 C C5 ATP . . . I 4 22.003 18.655 50.757 1 33.81 ? C5 ATP 1297 C 1 HETATM 26 C C6 ATP . . . I 4 22.216 17.277 50.269 1 33.89 ? C6 ATP 1297 C 1 HETATM 27 N N6 ATP . . . I 4 22.182 16.228 51.123 1 33.4 ? N6 ATP 1297 C 1 HETATM 28 N N1 ATP . . . I 4 22.444 17.122 48.944 1 34.07 ? N1 ATP 1297 C 1 HETATM 29 C C2 ATP . . . I 4 22.484 18.175 48.099 1 33.61 ? C2 ATP 1297 C 1 HETATM 30 N N3 ATP . . . I 4 22.3 19.452 48.473 1 32.41 ? N3 ATP 1297 C 1 HETATM 31 C C4 ATP . . . I 4 22.061 19.75 49.77 1 33.55 ? C4 ATP 1297 C 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #