data_2CD2 # _model_server_result.job_id L7HnIMLvyT5RGrOzBvD2Fg _model_server_result.datetime_utc '2024-11-24 10:35:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2cd2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":207}' # _entry.id 2CD2 # _exptl.entry_id 2CD2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.77 _cell.angle_gamma 90 _cell.entry_id 2CD2 _cell.length_a 37.305 _cell.length_b 43.145 _cell.length_c 61.147 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CD2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 290 n n PA O2A NAP sing 291 n n PA O5B NAP sing 292 n n PA O3 NAP sing 293 n n O2A HOA2 NAP sing 294 n n O5B C5B NAP sing 295 n n C5B C4B NAP sing 296 n n C5B H51A NAP sing 297 n n C5B H52A NAP sing 298 n n C4B O4B NAP sing 299 n n C4B C3B NAP sing 300 n n C4B H4B NAP sing 301 n n O4B C1B NAP sing 302 n n C3B O3B NAP sing 303 n n C3B C2B NAP sing 304 n n C3B H3B NAP sing 305 n n O3B HO3A NAP sing 306 n n C2B O2B NAP sing 307 n n C2B C1B NAP sing 308 n n C2B H2B NAP sing 309 n n O2B P2B NAP sing 310 n n C1B N9A NAP sing 311 n n C1B H1B NAP sing 312 n n N9A C8A NAP sing 313 n y N9A C4A NAP sing 314 n y C8A N7A NAP doub 315 n y C8A H8A NAP sing 316 n n N7A C5A NAP sing 317 n y C5A C6A NAP sing 318 n y C5A C4A NAP doub 319 n y C6A N6A NAP sing 320 n n C6A N1A NAP doub 321 n y N6A H61A NAP sing 322 n n N6A H62A NAP sing 323 n n N1A C2A NAP sing 324 n y C2A N3A NAP doub 325 n y C2A H2A NAP sing 326 n n N3A C4A NAP sing 327 n y O3 PN NAP sing 328 n n PN O1N NAP doub 329 n n PN O2N NAP sing 330 n n PN O5D NAP sing 331 n n O5D C5D NAP sing 332 n n C5D C4D NAP sing 333 n n C5D H51N NAP sing 334 n n C5D H52N NAP sing 335 n n C4D O4D NAP sing 336 n n C4D C3D NAP sing 337 n n C4D H4D NAP sing 338 n n O4D C1D NAP sing 339 n n C3D O3D NAP sing 340 n n C3D C2D NAP sing 341 n n C3D H3D NAP sing 342 n n O3D HO3N NAP sing 343 n n C2D O2D NAP sing 344 n n C2D C1D NAP sing 345 n n C2D H2D NAP sing 346 n n O2D HO2N NAP sing 347 n n C1D N1N NAP sing 348 n n C1D H1D NAP sing 349 n n N1N C2N NAP sing 350 n y N1N C6N NAP doub 351 n y C2N C3N NAP doub 352 n y C2N H2N NAP sing 353 n n C3N C7N NAP sing 354 n n C3N C4N NAP sing 355 n y C7N O7N NAP doub 356 n n C7N N7N NAP sing 357 n n N7N H71N NAP sing 358 n n N7N H72N NAP sing 359 n n C4N C5N NAP doub 360 n y C4N H4N NAP sing 361 n n C5N C6N NAP sing 362 n y C5N H5N NAP sing 363 n n C6N H6N NAP sing 364 n n P2B O1X NAP doub 365 n n P2B O2X NAP sing 366 n n P2B O3X NAP sing 367 n n O2X HOP2 NAP sing 368 n n O3X HOP3 NAP sing 369 n n # _atom_sites.entry_id 2CD2 _atom_sites.fract_transf_matrix[1][1] 0.026806 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002237 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023178 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016411 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 207 207 NAP NAP . C 3 FOL A 1 307 307 FOL FOL . D 4 HOH A 1 208 208 HOH HOH . D 4 HOH A 2 209 209 HOH HOH . D 4 HOH A 3 210 210 HOH HOH . D 4 HOH A 4 211 211 HOH HOH . D 4 HOH A 5 212 212 HOH HOH . D 4 HOH A 6 213 213 HOH HOH . D 4 HOH A 7 214 214 HOH HOH . D 4 HOH A 8 215 215 HOH HOH . D 4 HOH A 9 216 216 HOH HOH . D 4 HOH A 10 217 217 HOH HOH . D 4 HOH A 11 218 218 HOH HOH . D 4 HOH A 12 219 219 HOH HOH . D 4 HOH A 13 220 220 HOH HOH . D 4 HOH A 14 221 221 HOH HOH . D 4 HOH A 15 222 222 HOH HOH . D 4 HOH A 16 223 223 HOH HOH . D 4 HOH A 17 224 224 HOH HOH . D 4 HOH A 18 225 225 HOH HOH . D 4 HOH A 19 226 226 HOH HOH . D 4 HOH A 20 227 227 HOH HOH . D 4 HOH A 21 228 228 HOH HOH . D 4 HOH A 22 229 229 HOH HOH . D 4 HOH A 23 230 230 HOH HOH . D 4 HOH A 24 231 231 HOH HOH . D 4 HOH A 25 232 232 HOH HOH . D 4 HOH A 26 233 233 HOH HOH . D 4 HOH A 27 234 234 HOH HOH . D 4 HOH A 28 235 235 HOH HOH . D 4 HOH A 29 236 236 HOH HOH . D 4 HOH A 30 237 237 HOH HOH . D 4 HOH A 31 238 238 HOH HOH . D 4 HOH A 32 239 239 HOH HOH . D 4 HOH A 33 240 240 HOH HOH . D 4 HOH A 34 241 241 HOH HOH . D 4 HOH A 35 242 242 HOH HOH . D 4 HOH A 36 243 243 HOH HOH . D 4 HOH A 37 244 244 HOH HOH . D 4 HOH A 38 245 245 HOH HOH . D 4 HOH A 39 246 246 HOH HOH . D 4 HOH A 40 247 247 HOH HOH . D 4 HOH A 41 248 248 HOH HOH . D 4 HOH A 42 249 249 HOH HOH . D 4 HOH A 43 250 250 HOH HOH . D 4 HOH A 44 251 251 HOH HOH . D 4 HOH A 45 252 252 HOH HOH . D 4 HOH A 46 253 253 HOH HOH . D 4 HOH A 47 254 254 HOH HOH . D 4 HOH A 48 255 255 HOH HOH . D 4 HOH A 49 256 256 HOH HOH . D 4 HOH A 50 257 257 HOH HOH . D 4 HOH A 51 258 258 HOH HOH . D 4 HOH A 52 259 259 HOH HOH . D 4 HOH A 53 260 260 HOH HOH . D 4 HOH A 54 261 261 HOH HOH . D 4 HOH A 55 262 262 HOH HOH . D 4 HOH A 56 263 263 HOH HOH . D 4 HOH A 57 264 264 HOH HOH . D 4 HOH A 58 265 265 HOH HOH . D 4 HOH A 59 266 266 HOH HOH . D 4 HOH A 60 267 267 HOH HOH . D 4 HOH A 61 268 268 HOH HOH . D 4 HOH A 62 269 269 HOH HOH . D 4 HOH A 63 270 270 HOH HOH . D 4 HOH A 64 271 271 HOH HOH . D 4 HOH A 65 272 272 HOH HOH . D 4 HOH A 66 273 273 HOH HOH . D 4 HOH A 67 274 274 HOH HOH . D 4 HOH A 68 275 275 HOH HOH . D 4 HOH A 69 276 276 HOH HOH . D 4 HOH A 70 277 277 HOH HOH . D 4 HOH A 71 278 278 HOH HOH . D 4 HOH A 72 279 279 HOH HOH . D 4 HOH A 73 280 280 HOH HOH . D 4 HOH A 74 281 281 HOH HOH . D 4 HOH A 75 282 282 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 15.706 9.29 23.432 1 24.89 ? PA NAP 207 A 1 HETATM 2 O O1A NAP . . . B 2 15.67 9.572 21.931 1 21.67 ? O1A NAP 207 A 1 HETATM 3 O O2A NAP . . . B 2 14.392 8.963 24.005 1 23.47 ? O2A NAP 207 A 1 HETATM 4 O O5B NAP . . . B 2 16.353 10.749 23.952 1 24.26 ? O5B NAP 207 A 1 HETATM 5 C C5B NAP . . . B 2 16.595 10.861 25.414 1 26.21 ? C5B NAP 207 A 1 HETATM 6 C C4B NAP . . . B 2 16.449 12.375 25.664 1 27.11 ? C4B NAP 207 A 1 HETATM 7 O O4B NAP . . . B 2 15.308 12.735 25.372 1 27.31 ? O4B NAP 207 A 1 HETATM 8 C C3B NAP . . . B 2 16.469 12.499 27.295 1 28.84 ? C3B NAP 207 A 1 HETATM 9 O O3B NAP . . . B 2 17.965 12.532 27.388 1 28.99 ? O3B NAP 207 A 1 HETATM 10 C C2B NAP . . . B 2 15.729 13.846 27.373 1 28.6 ? C2B NAP 207 A 1 HETATM 11 O O2B NAP . . . B 2 16.41 14.916 26.864 1 31.08 ? O2B NAP 207 A 1 HETATM 12 C C1B NAP . . . B 2 14.628 13.571 26.32 1 29.42 ? C1B NAP 207 A 1 HETATM 13 N N9A NAP . . . B 2 13.467 12.94 26.922 1 30.97 ? N9A NAP 207 A 1 HETATM 14 C C8A NAP . . . B 2 13.05 11.671 26.632 1 30.96 ? C8A NAP 207 A 1 HETATM 15 N N7A NAP . . . B 2 11.979 11.318 27.291 1 30.17 ? N7A NAP 207 A 1 HETATM 16 C C5A NAP . . . B 2 11.779 12.542 28.058 1 31.51 ? C5A NAP 207 A 1 HETATM 17 C C6A NAP . . . B 2 10.704 12.947 29.125 1 32.07 ? C6A NAP 207 A 1 HETATM 18 N N6A NAP . . . B 2 9.789 11.982 29.387 1 33.19 ? N6A NAP 207 A 1 HETATM 19 N N1A NAP . . . B 2 10.793 14.128 29.615 1 30.95 ? N1A NAP 207 A 1 HETATM 20 C C2A NAP . . . B 2 11.777 14.93 29.209 1 30.88 ? C2A NAP 207 A 1 HETATM 21 N N3A NAP . . . B 2 12.749 14.69 28.35 1 30.55 ? N3A NAP 207 A 1 HETATM 22 C C4A NAP . . . B 2 12.68 13.459 27.82 1 30.25 ? C4A NAP 207 A 1 HETATM 23 O O3 NAP . . . B 2 16.902 8.397 23.804 1 22.85 ? O3 NAP 207 A 1 HETATM 24 P PN NAP . . . B 2 17.41 6.903 23.871 1 23.83 ? PN NAP 207 A 1 HETATM 25 O O1N NAP . . . B 2 16.675 6.187 24.844 1 26.26 ? O1N NAP 207 A 1 HETATM 26 O O2N NAP . . . B 2 18.847 6.911 24.129 1 25.38 ? O2N NAP 207 A 1 HETATM 27 O O5D NAP . . . B 2 17.203 6.337 22.374 1 23.44 ? O5D NAP 207 A 1 HETATM 28 C C5D NAP . . . B 2 17.896 6.801 21.217 1 22.88 ? C5D NAP 207 A 1 HETATM 29 C C4D NAP . . . B 2 18.457 5.468 20.664 1 21.5 ? C4D NAP 207 A 1 HETATM 30 O O4D NAP . . . B 2 17.263 4.644 20.288 1 20.88 ? O4D NAP 207 A 1 HETATM 31 C C3D NAP . . . B 2 19.391 5.585 19.405 1 20.4 ? C3D NAP 207 A 1 HETATM 32 O O3D NAP . . . B 2 20.248 4.422 19.323 1 20.17 ? O3D NAP 207 A 1 HETATM 33 C C2D NAP . . . B 2 18.324 5.485 18.275 1 20.22 ? C2D NAP 207 A 1 HETATM 34 O O2D NAP . . . B 2 18.917 5.029 17.11 1 22.72 ? O2D NAP 207 A 1 HETATM 35 C C1D NAP . . . B 2 17.421 4.393 18.846 1 20.29 ? C1D NAP 207 A 1 HETATM 36 N N1N NAP . . . B 2 16.018 4.353 18.225 1 18.81 ? N1N NAP 207 A 1 HETATM 37 C C2N NAP . . . B 2 15.527 3.223 17.54 1 17.58 ? C2N NAP 207 A 1 HETATM 38 C C3N NAP . . . B 2 14.292 3.306 17.025 1 17.21 ? C3N NAP 207 A 1 HETATM 39 C C7N NAP . . . B 2 13.783 2.096 16.296 1 15.22 ? C7N NAP 207 A 1 HETATM 40 O O7N NAP . . . B 2 12.66 2.107 15.832 1 13.79 ? O7N NAP 207 A 1 HETATM 41 N N7N NAP . . . B 2 14.679 1.086 16.266 1 14.82 ? N7N NAP 207 A 1 HETATM 42 C C4N NAP . . . B 2 13.377 4.534 17.145 1 17.71 ? C4N NAP 207 A 1 HETATM 43 C C5N NAP . . . B 2 14.055 5.643 17.904 1 17.76 ? C5N NAP 207 A 1 HETATM 44 C C6N NAP . . . B 2 15.277 5.535 18.398 1 19.43 ? C6N NAP 207 A 1 HETATM 45 P P2B NAP . . . B 2 17.487 15.994 27.683 1 33.51 ? P2B NAP 207 A 1 HETATM 46 O O1X NAP . . . B 2 16.647 16.367 28.898 1 32.99 ? O1X NAP 207 A 1 HETATM 47 O O2X NAP . . . B 2 17.597 17.019 26.652 1 32.33 ? O2X NAP 207 A 1 HETATM 48 O O3X NAP . . . B 2 18.605 15.122 28.126 1 32.98 ? O3X NAP 207 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 48 #