data_2CDZ # _model_server_result.job_id tGd96q1ZIkamc0_O7wy64w _model_server_result.datetime_utc '2024-11-23 04:24:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2cdz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1591}' # _entry.id 2CDZ # _exptl.entry_id 2CDZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.894 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N2-[(1R,2S)-2-AMINOCYCLOHEXYL]-N6-(3-CHLOROPHENYL)-9-ETHYL-9H-PURINE-2,6-DIAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2CDZ _cell.length_a 145.817 _cell.length_b 145.817 _cell.length_c 42.382 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CDZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 185 A LYS 473 1_555 A N SEP 186 A SEP 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C SEP 186 A SEP 474 1_555 A N LEU 187 A LEU 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'C19 H24 Cl N7' _chem_comp.formula_weight 385.894 _chem_comp.id 23D _chem_comp.mon_nstd_flag . _chem_comp.name N2-[(1R,2S)-2-AMINOCYCLOHEXYL]-N6-(3-CHLOROPHENYL)-9-ETHYL-9H-PURINE-2,6-DIAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAS CAQ 23D sing 1 n y CAS CAM 23D doub 2 n y CAS HAS 23D sing 3 n n CAQ CL1 23D sing 4 n n CAQ CAP 23D doub 5 n y CAP CAO 23D sing 6 n y CAP HAP 23D sing 7 n n CAO CAN 23D doub 8 n y CAO HAO 23D sing 9 n n CAN CAM 23D sing 10 n y CAN HAN 23D sing 11 n n CAM N6 23D sing 12 n n N6 C6 23D sing 13 n n N6 HN6 23D sing 14 n n C6 N1 23D doub 15 n y C6 C5 23D sing 16 n y N1 C2 23D sing 17 n y C5 N7 23D sing 18 n y C5 C4 23D doub 19 n y N7 C8 23D doub 20 n y C8 N9 23D sing 21 n y C8 H8 23D sing 22 n n N9 CAZ 23D sing 23 n n N9 C4 23D sing 24 n y CAZ CBA 23D sing 25 n n CAZ HAZ1 23D sing 26 n n CAZ HAZ2 23D sing 27 n n CBA HBA1 23D sing 28 n n CBA HBA2 23D sing 29 n n CBA HBA3 23D sing 30 n n C4 N3 23D sing 31 n y N3 C2 23D doub 32 n y C2 N2 23D sing 33 n n N2 CAG 23D sing 34 n n N2 HN2 23D sing 35 n n CAG CAF 23D sing 36 n n CAG CAA 23D sing 37 n n CAG HAG 23D sing 38 n n CAF CAE 23D sing 39 n n CAF HAF1 23D sing 40 n n CAF HAF2 23D sing 41 n n CAE CAD 23D sing 42 n n CAE HAE1 23D sing 43 n n CAE HAE2 23D sing 44 n n CAD CAC 23D sing 45 n n CAD HAD1 23D sing 46 n n CAD HAD2 23D sing 47 n n CAC CAA 23D sing 48 n n CAC HAC1 23D sing 49 n n CAC HAC2 23D sing 50 n n CAA NAB 23D sing 51 n n CAA HAA 23D sing 52 n n NAB HAB1 23D sing 53 n n NAB HAB2 23D sing 54 n n # _atom_sites.entry_id 2CDZ _atom_sites.fract_transf_matrix[1][1] 0.006858 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006858 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023595 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 23D A 1 1591 1591 23D 23D . C 3 SO4 A 1 1592 1592 SO4 SO4 . D 3 SO4 A 1 1593 1593 SO4 SO4 . E 4 CL A 1 1594 1594 CL CL . F 5 HOH A 1 2001 2001 HOH HOH . F 5 HOH A 2 2002 2002 HOH HOH . F 5 HOH A 3 2003 2003 HOH HOH . F 5 HOH A 4 2004 2004 HOH HOH . F 5 HOH A 5 2005 2005 HOH HOH . F 5 HOH A 6 2006 2006 HOH HOH . F 5 HOH A 7 2007 2007 HOH HOH . F 5 HOH A 8 2008 2008 HOH HOH . F 5 HOH A 9 2009 2009 HOH HOH . F 5 HOH A 10 2010 2010 HOH HOH . F 5 HOH A 11 2011 2011 HOH HOH . F 5 HOH A 12 2012 2012 HOH HOH . F 5 HOH A 13 2013 2013 HOH HOH . F 5 HOH A 14 2014 2014 HOH HOH . F 5 HOH A 15 2015 2015 HOH HOH . F 5 HOH A 16 2016 2016 HOH HOH . F 5 HOH A 17 2017 2017 HOH HOH . F 5 HOH A 18 2018 2018 HOH HOH . F 5 HOH A 19 2019 2019 HOH HOH . F 5 HOH A 20 2020 2020 HOH HOH . F 5 HOH A 21 2021 2021 HOH HOH . F 5 HOH A 22 2022 2022 HOH HOH . F 5 HOH A 23 2023 2023 HOH HOH . F 5 HOH A 24 2024 2024 HOH HOH . F 5 HOH A 25 2025 2025 HOH HOH . F 5 HOH A 26 2026 2026 HOH HOH . F 5 HOH A 27 2027 2027 HOH HOH . F 5 HOH A 28 2028 2028 HOH HOH . F 5 HOH A 29 2029 2029 HOH HOH . F 5 HOH A 30 2030 2030 HOH HOH . F 5 HOH A 31 2031 2031 HOH HOH . F 5 HOH A 32 2032 2032 HOH HOH . F 5 HOH A 33 2033 2033 HOH HOH . F 5 HOH A 34 2034 2034 HOH HOH . F 5 HOH A 35 2035 2035 HOH HOH . F 5 HOH A 36 2036 2036 HOH HOH . F 5 HOH A 37 2037 2037 HOH HOH . F 5 HOH A 38 2038 2038 HOH HOH . F 5 HOH A 39 2039 2039 HOH HOH . F 5 HOH A 40 2040 2040 HOH HOH . F 5 HOH A 41 2041 2041 HOH HOH . F 5 HOH A 42 2042 2042 HOH HOH . F 5 HOH A 43 2043 2043 HOH HOH . F 5 HOH A 44 2044 2044 HOH HOH . F 5 HOH A 45 2045 2045 HOH HOH . F 5 HOH A 46 2046 2046 HOH HOH . F 5 HOH A 47 2047 2047 HOH HOH . F 5 HOH A 48 2048 2048 HOH HOH . F 5 HOH A 49 2049 2049 HOH HOH . F 5 HOH A 50 2050 2050 HOH HOH . F 5 HOH A 51 2051 2051 HOH HOH . F 5 HOH A 52 2052 2052 HOH HOH . F 5 HOH A 53 2053 2053 HOH HOH . F 5 HOH A 54 2054 2054 HOH HOH . F 5 HOH A 55 2055 2055 HOH HOH . F 5 HOH A 56 2056 2056 HOH HOH . F 5 HOH A 57 2057 2057 HOH HOH . F 5 HOH A 58 2058 2058 HOH HOH . F 5 HOH A 59 2059 2059 HOH HOH . F 5 HOH A 60 2060 2060 HOH HOH . F 5 HOH A 61 2061 2061 HOH HOH . F 5 HOH A 62 2062 2062 HOH HOH . F 5 HOH A 63 2063 2063 HOH HOH . F 5 HOH A 64 2064 2064 HOH HOH . F 5 HOH A 65 2065 2065 HOH HOH . F 5 HOH A 66 2066 2066 HOH HOH . F 5 HOH A 67 2067 2067 HOH HOH . F 5 HOH A 68 2068 2068 HOH HOH . F 5 HOH A 69 2069 2069 HOH HOH . F 5 HOH A 70 2070 2070 HOH HOH . F 5 HOH A 71 2071 2071 HOH HOH . F 5 HOH A 72 2072 2072 HOH HOH . F 5 HOH A 73 2073 2073 HOH HOH . F 5 HOH A 74 2074 2074 HOH HOH . F 5 HOH A 75 2075 2075 HOH HOH . F 5 HOH A 76 2076 2076 HOH HOH . F 5 HOH A 77 2077 2077 HOH HOH . F 5 HOH A 78 2078 2078 HOH HOH . F 5 HOH A 79 2079 2079 HOH HOH . F 5 HOH A 80 2080 2080 HOH HOH . F 5 HOH A 81 2081 2081 HOH HOH . F 5 HOH A 82 2082 2082 HOH HOH . F 5 HOH A 83 2083 2083 HOH HOH . F 5 HOH A 84 2084 2084 HOH HOH . F 5 HOH A 85 2085 2085 HOH HOH . F 5 HOH A 86 2086 2086 HOH HOH . F 5 HOH A 87 2087 2087 HOH HOH . F 5 HOH A 88 2088 2088 HOH HOH . F 5 HOH A 89 2089 2089 HOH HOH . F 5 HOH A 90 2090 2090 HOH HOH . F 5 HOH A 91 2091 2091 HOH HOH . F 5 HOH A 92 2092 2092 HOH HOH . F 5 HOH A 93 2093 2093 HOH HOH . F 5 HOH A 94 2094 2094 HOH HOH . F 5 HOH A 95 2095 2095 HOH HOH . F 5 HOH A 96 2096 2096 HOH HOH . F 5 HOH A 97 2097 2097 HOH HOH . F 5 HOH A 98 2098 2098 HOH HOH . F 5 HOH A 99 2099 2099 HOH HOH . F 5 HOH A 100 2100 2100 HOH HOH . F 5 HOH A 101 2101 2101 HOH HOH . F 5 HOH A 102 2102 2102 HOH HOH . F 5 HOH A 103 2103 2103 HOH HOH . F 5 HOH A 104 2104 2104 HOH HOH . F 5 HOH A 105 2105 2105 HOH HOH . F 5 HOH A 106 2106 2106 HOH HOH . F 5 HOH A 107 2107 2107 HOH HOH . F 5 HOH A 108 2108 2108 HOH HOH . F 5 HOH A 109 2109 2109 HOH HOH . F 5 HOH A 110 2110 2110 HOH HOH . F 5 HOH A 111 2111 2111 HOH HOH . F 5 HOH A 112 2112 2112 HOH HOH . F 5 HOH A 113 2113 2113 HOH HOH . F 5 HOH A 114 2114 2114 HOH HOH . F 5 HOH A 115 2115 2115 HOH HOH . F 5 HOH A 116 2116 2116 HOH HOH . F 5 HOH A 117 2117 2117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAS 23D . . . B 2 41.971 34.568 20.118 1 45.05 ? CAS 23D 1591 A 1 HETATM 2 C CAQ 23D . . . B 2 40.686 35.021 20.415 1 52.38 ? CAQ 23D 1591 A 1 HETATM 3 CL CL1 23D . . . B 2 39.882 34.501 21.876 1 61.65 ? CL1 23D 1591 A 1 HETATM 4 C CAP 23D . . . B 2 40.046 35.903 19.548 1 45.63 ? CAP 23D 1591 A 1 HETATM 5 C CAO 23D . . . B 2 40.682 36.305 18.389 1 49.51 ? CAO 23D 1591 A 1 HETATM 6 C CAN 23D . . . B 2 41.959 35.843 18.099 1 46.81 ? CAN 23D 1591 A 1 HETATM 7 C CAM 23D . . . B 2 42.626 34.961 18.947 1 45.98 ? CAM 23D 1591 A 1 HETATM 8 N N6 23D . . . B 2 43.879 34.545 18.613 1 41.35 ? N6 23D 1591 A 1 HETATM 9 C C6 23D . . . B 2 44.571 33.635 19.302 1 36.81 ? C6 23D 1591 A 1 HETATM 10 N N1 23D . . . B 2 43.912 32.823 20.105 1 38.02 ? N1 23D 1591 A 1 HETATM 11 C C5 23D . . . B 2 45.95 33.483 19.224 1 34.32 ? C5 23D 1591 A 1 HETATM 12 N N7 23D . . . B 2 46.889 34.114 18.526 1 31.88 ? N7 23D 1591 A 1 HETATM 13 C C8 23D . . . B 2 48.061 33.574 18.824 1 38.67 ? C8 23D 1591 A 1 HETATM 14 N N9 23D . . . B 2 47.853 32.598 19.712 1 40.21 ? N9 23D 1591 A 1 HETATM 15 C CAZ 23D . . . B 2 48.927 31.774 20.281 1 36.81 ? CAZ 23D 1591 A 1 HETATM 16 C CBA 23D . . . B 2 49.447 30.893 19.162 1 45.89 ? CBA 23D 1591 A 1 HETATM 17 C C4 23D . . . B 2 46.554 32.489 19.996 1 35.96 ? C4 23D 1591 A 1 HETATM 18 N N3 23D . . . B 2 45.812 31.676 20.808 1 35.12 ? N3 23D 1591 A 1 HETATM 19 C C2 23D . . . B 2 44.483 31.88 20.852 1 39.27 ? C2 23D 1591 A 1 HETATM 20 N N2 23D . . . B 2 43.527 31.215 21.505 1 46.69 ? N2 23D 1591 A 1 HETATM 21 C CAG 23D . . . B 2 43.481 30.46 22.758 1 56.31 ? CAG 23D 1591 A 1 HETATM 22 C CAF 23D . . . B 2 44.825 30.236 23.427 1 61.97 ? CAF 23D 1591 A 1 HETATM 23 C CAE 23D . . . B 2 44.662 29.323 24.661 1 62.38 ? CAE 23D 1591 A 1 HETATM 24 C CAD 23D . . . B 2 43.218 28.87 24.882 1 61.03 ? CAD 23D 1591 A 1 HETATM 25 C CAC 23D . . . B 2 42.639 28.214 23.615 1 61.02 ? CAC 23D 1591 A 1 HETATM 26 C CAA 23D . . . B 2 42.752 29.156 22.406 1 58.29 ? CAA 23D 1591 A 1 HETATM 27 N NAB 23D . . . B 2 41.406 29.509 21.938 1 53.83 ? NAB 23D 1591 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #