data_2CGP # _model_server_result.job_id a1H0h4ck9M_lh50p6qxqmA _model_server_result.datetime_utc '2024-11-24 10:54:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2cgp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":622}' # _entry.id 2CGP # _exptl.entry_id 2CGP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2CGP _cell.length_a 79.19 _cell.length_b 79.19 _cell.length_c 140.4 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CGP _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 46.8 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N1 DG 1 B DG 503 1_555 B N3 DC 11 C DC 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 1 B DG 503 1_555 B O2 DC 11 C DC 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 1 B DG 503 1_555 B N4 DC 11 C DC 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DT 2 B DT 504 1_555 B N1 DA 10 C DA 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O4 DT 2 B DT 504 1_555 B N6 DA 10 C DA 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DC 3 B DC 505 1_555 B N1 DG 9 C DG 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N4 DC 3 B DC 505 1_555 B O6 DG 9 C DG 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O2 DC 3 B DC 505 1_555 B N2 DG 9 C DG 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DA 4 B DA 506 1_555 B N3 DT 8 C DT 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N6 DA 4 B DA 506 1_555 B O4 DT 8 C DT 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DA-DG MISPAIR' hydrog11 A N1 DA 4 B DA 506 1_555 B N1 DG 9 C DG 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 DC 5 B DC 507 1_555 B N1 DG 7 C DG 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N4 DC 5 B DC 507 1_555 B O6 DG 7 C DG 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O2 DC 5 B DC 507 1_555 B N2 DG 7 C DG 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DA 6 B DA 508 1_555 B N3 DT 6 C DT 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N6 DA 6 B DA 508 1_555 B O4 DT 6 C DT 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 DT 7 B DT 509 1_555 B N1 DA 5 C DA 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O4 DT 7 B DT 509 1_555 B N6 DA 5 C DA 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DT 8 B DT 510 1_555 B N1 DA 4 C DA 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O4 DT 8 B DT 510 1_555 B N6 DA 4 C DA 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N1 DA 9 B DA 511 1_555 B N3 DT 3 C DT 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N6 DA 9 B DA 511 1_555 B O4 DT 3 C DT 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N1 DA 10 B DA 512 1_555 B N3 DT 2 C DT 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N6 DA 10 B DA 512 1_555 B O4 DT 2 C DT 535 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N3 DT 11 B DT 513 1_555 B N1 DA 1 C DA 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O4 DT 11 B DT 513 1_555 B N6 DA 1 C DA 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # _atom_sites.entry_id 2CGP _atom_sites.fract_transf_matrix[1][1] 0.012628 _atom_sites.fract_transf_matrix[1][2] 0.007291 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014581 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007123 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CMP A 1 621 621 CMP CMP . E 4 CMP A 1 622 622 CMP CMP . F 5 HOH B 1 705 705 HOH HOH . F 5 HOH B 2 811 811 HOH HOH . G 5 HOH C 1 721 721 HOH HOH . G 5 HOH C 2 727 727 HOH HOH . G 5 HOH C 3 729 729 HOH HOH . G 5 HOH C 4 743 743 HOH HOH . G 5 HOH C 5 748 748 HOH HOH . G 5 HOH C 6 764 764 HOH HOH . G 5 HOH C 7 768 768 HOH HOH . G 5 HOH C 8 784 784 HOH HOH . G 5 HOH C 9 804 804 HOH HOH . G 5 HOH C 10 808 808 HOH HOH . G 5 HOH C 11 809 809 HOH HOH . G 5 HOH C 12 812 812 HOH HOH . G 5 HOH C 13 819 819 HOH HOH . G 5 HOH C 14 821 821 HOH HOH . G 5 HOH C 15 844 844 HOH HOH . H 5 HOH A 1 700 700 HOH HOH . H 5 HOH A 2 701 701 HOH HOH . H 5 HOH A 3 702 702 HOH HOH . H 5 HOH A 4 703 703 HOH HOH . H 5 HOH A 5 704 704 HOH HOH . H 5 HOH A 6 706 706 HOH HOH . H 5 HOH A 7 707 707 HOH HOH . H 5 HOH A 8 708 708 HOH HOH . H 5 HOH A 9 709 709 HOH HOH . H 5 HOH A 10 710 710 HOH HOH . H 5 HOH A 11 711 711 HOH HOH . H 5 HOH A 12 712 712 HOH HOH . H 5 HOH A 13 713 713 HOH HOH . H 5 HOH A 14 714 714 HOH HOH . H 5 HOH A 15 715 715 HOH HOH . H 5 HOH A 16 716 716 HOH HOH . H 5 HOH A 17 717 717 HOH HOH . H 5 HOH A 18 718 718 HOH HOH . H 5 HOH A 19 719 719 HOH HOH . H 5 HOH A 20 720 720 HOH HOH . H 5 HOH A 21 722 722 HOH HOH . H 5 HOH A 22 723 723 HOH HOH . H 5 HOH A 23 724 724 HOH HOH . H 5 HOH A 24 725 725 HOH HOH . H 5 HOH A 25 726 726 HOH HOH . H 5 HOH A 26 728 728 HOH HOH . H 5 HOH A 27 730 730 HOH HOH . H 5 HOH A 28 731 731 HOH HOH . H 5 HOH A 29 732 732 HOH HOH . H 5 HOH A 30 733 733 HOH HOH . H 5 HOH A 31 734 734 HOH HOH . H 5 HOH A 32 735 735 HOH HOH . H 5 HOH A 33 736 736 HOH HOH . H 5 HOH A 34 737 737 HOH HOH . H 5 HOH A 35 738 738 HOH HOH . H 5 HOH A 36 739 739 HOH HOH . H 5 HOH A 37 740 740 HOH HOH . H 5 HOH A 38 741 741 HOH HOH . H 5 HOH A 39 742 742 HOH HOH . H 5 HOH A 40 744 744 HOH HOH . H 5 HOH A 41 745 745 HOH HOH . H 5 HOH A 42 746 746 HOH HOH . H 5 HOH A 43 747 747 HOH HOH . H 5 HOH A 44 749 749 HOH HOH . H 5 HOH A 45 750 750 HOH HOH . H 5 HOH A 46 751 751 HOH HOH . H 5 HOH A 47 752 752 HOH HOH . H 5 HOH A 48 753 753 HOH HOH . H 5 HOH A 49 754 754 HOH HOH . H 5 HOH A 50 755 755 HOH HOH . H 5 HOH A 51 756 756 HOH HOH . H 5 HOH A 52 757 757 HOH HOH . H 5 HOH A 53 758 758 HOH HOH . H 5 HOH A 54 759 759 HOH HOH . H 5 HOH A 55 760 760 HOH HOH . H 5 HOH A 56 761 761 HOH HOH . H 5 HOH A 57 762 762 HOH HOH . H 5 HOH A 58 763 763 HOH HOH . H 5 HOH A 59 765 765 HOH HOH . H 5 HOH A 60 766 766 HOH HOH . H 5 HOH A 61 767 767 HOH HOH . H 5 HOH A 62 769 769 HOH HOH . H 5 HOH A 63 770 770 HOH HOH . H 5 HOH A 64 771 771 HOH HOH . H 5 HOH A 65 772 772 HOH HOH . H 5 HOH A 66 773 773 HOH HOH . H 5 HOH A 67 774 774 HOH HOH . H 5 HOH A 68 775 775 HOH HOH . H 5 HOH A 69 776 776 HOH HOH . H 5 HOH A 70 777 777 HOH HOH . H 5 HOH A 71 778 778 HOH HOH . H 5 HOH A 72 779 779 HOH HOH . H 5 HOH A 73 780 780 HOH HOH . H 5 HOH A 74 781 781 HOH HOH . H 5 HOH A 75 782 782 HOH HOH . H 5 HOH A 76 783 783 HOH HOH . H 5 HOH A 77 785 785 HOH HOH . H 5 HOH A 78 786 786 HOH HOH . H 5 HOH A 79 787 787 HOH HOH . H 5 HOH A 80 788 788 HOH HOH . H 5 HOH A 81 789 789 HOH HOH . H 5 HOH A 82 790 790 HOH HOH . H 5 HOH A 83 791 791 HOH HOH . H 5 HOH A 84 792 792 HOH HOH . H 5 HOH A 85 793 793 HOH HOH . H 5 HOH A 86 794 794 HOH HOH . H 5 HOH A 87 795 795 HOH HOH . H 5 HOH A 88 796 796 HOH HOH . H 5 HOH A 89 797 797 HOH HOH . H 5 HOH A 90 798 798 HOH HOH . H 5 HOH A 91 799 799 HOH HOH . H 5 HOH A 92 800 800 HOH HOH . H 5 HOH A 93 801 801 HOH HOH . H 5 HOH A 94 802 802 HOH HOH . H 5 HOH A 95 803 803 HOH HOH . H 5 HOH A 96 805 805 HOH HOH . H 5 HOH A 97 806 806 HOH HOH . H 5 HOH A 98 807 807 HOH HOH . H 5 HOH A 99 810 810 HOH HOH . H 5 HOH A 100 813 813 HOH HOH . H 5 HOH A 101 814 814 HOH HOH . H 5 HOH A 102 815 815 HOH HOH . H 5 HOH A 103 816 816 HOH HOH . H 5 HOH A 104 817 817 HOH HOH . H 5 HOH A 105 818 818 HOH HOH . H 5 HOH A 106 820 820 HOH HOH . H 5 HOH A 107 822 822 HOH HOH . H 5 HOH A 108 823 823 HOH HOH . H 5 HOH A 109 824 824 HOH HOH . H 5 HOH A 110 825 825 HOH HOH . H 5 HOH A 111 826 826 HOH HOH . H 5 HOH A 112 827 827 HOH HOH . H 5 HOH A 113 828 828 HOH HOH . H 5 HOH A 114 829 829 HOH HOH . H 5 HOH A 115 830 830 HOH HOH . H 5 HOH A 116 831 831 HOH HOH . H 5 HOH A 117 832 832 HOH HOH . H 5 HOH A 118 833 833 HOH HOH . H 5 HOH A 119 834 834 HOH HOH . H 5 HOH A 120 835 835 HOH HOH . H 5 HOH A 121 836 836 HOH HOH . H 5 HOH A 122 837 837 HOH HOH . H 5 HOH A 123 838 838 HOH HOH . H 5 HOH A 124 839 839 HOH HOH . H 5 HOH A 125 840 840 HOH HOH . H 5 HOH A 126 841 841 HOH HOH . H 5 HOH A 127 842 842 HOH HOH . H 5 HOH A 128 843 843 HOH HOH . H 5 HOH A 129 845 845 HOH HOH . H 5 HOH A 130 846 846 HOH HOH . H 5 HOH A 131 847 847 HOH HOH . H 5 HOH A 132 848 848 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . E 4 -9.182 26.482 8.162 1 22.03 ? P CMP 622 A 1 HETATM 2 O O1P CMP . . . E 4 -8.581 25.217 8.673 1 21.54 ? O1P CMP 622 A 1 HETATM 3 O O2P CMP . . . E 4 -8.791 26.987 6.82 1 21.8 ? O2P CMP 622 A 1 HETATM 4 O O5' CMP . . . E 4 -10.785 26.338 8.177 1 21.52 ? O5' CMP 622 A 1 HETATM 5 C C5' CMP . . . E 4 -11.558 26.621 9.355 1 20.44 ? C5' CMP 622 A 1 HETATM 6 C C4' CMP . . . E 4 -11.048 27.883 9.966 1 21.24 ? C4' CMP 622 A 1 HETATM 7 O O4' CMP . . . E 4 -11.711 28.261 11.192 1 21.82 ? O4' CMP 622 A 1 HETATM 8 C C3' CMP . . . E 4 -9.622 27.724 10.422 1 21.38 ? C3' CMP 622 A 1 HETATM 9 O O3' CMP . . . E 4 -8.844 27.637 9.243 1 21.24 ? O3' CMP 622 A 1 HETATM 10 C C2' CMP . . . E 4 -9.448 28.981 11.262 1 21.57 ? C2' CMP 622 A 1 HETATM 11 O O2' CMP . . . E 4 -9.277 30.13 10.454 1 21.95 ? O2' CMP 622 A 1 HETATM 12 C C1' CMP . . . E 4 -10.818 29.061 11.946 1 22.16 ? C1' CMP 622 A 1 HETATM 13 N N9 CMP . . . E 4 -10.85 28.626 13.342 1 23.32 ? N9 CMP 622 A 1 HETATM 14 C C8 CMP . . . E 4 -11.585 29.191 14.359 1 23.71 ? C8 CMP 622 A 1 HETATM 15 N N7 CMP . . . E 4 -11.397 28.623 15.528 1 24.46 ? N7 CMP 622 A 1 HETATM 16 C C5 CMP . . . E 4 -10.489 27.607 15.263 1 24.48 ? C5 CMP 622 A 1 HETATM 17 C C6 CMP . . . E 4 -9.895 26.639 16.081 1 24.77 ? C6 CMP 622 A 1 HETATM 18 N N6 CMP . . . E 4 -10.144 26.525 17.387 1 26.29 ? N6 CMP 622 A 1 HETATM 19 N N1 CMP . . . E 4 -9.028 25.775 15.506 1 24.07 ? N1 CMP 622 A 1 HETATM 20 C C2 CMP . . . E 4 -8.789 25.887 14.197 1 23.29 ? C2 CMP 622 A 1 HETATM 21 N N3 CMP . . . E 4 -9.288 26.751 13.321 1 23.07 ? N3 CMP 622 A 1 HETATM 22 C C4 CMP . . . E 4 -10.143 27.596 13.921 1 24.07 ? C4 CMP 622 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 371 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 22 #