data_2CGR # _model_server_result.job_id qbR3_CHcNx7kQ58yV7fsAA _model_server_result.datetime_utc '2025-03-06 03:54:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2cgr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":215}' # _entry.id 2CGR # _exptl.entry_id 2CGR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.431 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-(P-CYANOPHENYL)-N'-DIPHENYLMETHYL-GUANIDINE-ACETIC ACID" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2CGR _cell.length_a 131 _cell.length_b 114.1 _cell.length_c 37.3 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CGR _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 93 L CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 139 L CYS 139 1_555 A SG CYS 199 L CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 A SG CYS 219 L CYS 219 1_555 B SG CYS 131 H CYS 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf5 B SG CYS 143 H CYS 143 1_555 B SG CYS 198 H CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? # _chem_comp.formula 'C23 H20 N4 O2' _chem_comp.formula_weight 384.431 _chem_comp.id GAS _chem_comp.mon_nstd_flag . _chem_comp.name "N-(P-CYANOPHENYL)-N'-DIPHENYLMETHYL-GUANIDINE-ACETIC ACID" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GAS sing 83 n y C1 C6 GAS doub 84 n y C1 H1 GAS sing 85 n n C2 C3 GAS doub 86 n y C2 H2 GAS sing 87 n n C3 C4 GAS sing 88 n y C3 H3 GAS sing 89 n n C4 C5 GAS doub 90 n y C4 H4 GAS sing 91 n n C5 C6 GAS sing 92 n y C5 H5 GAS sing 93 n n C6 C7 GAS sing 94 n n C7 N7 GAS sing 95 n n C7 C1A GAS sing 96 n n C7 H7 GAS sing 97 n n N7 C8 GAS sing 98 n n N7 HN7 GAS sing 99 n n C1A C2A GAS doub 100 n y C1A C6A GAS sing 101 n y C2A C3A GAS sing 102 n y C2A H2A GAS sing 103 n n C3A C4A GAS doub 104 n y C3A H3A GAS sing 105 n n C4A C5A GAS sing 106 n y C4A H4A GAS sing 107 n n C5A C6A GAS doub 108 n y C5A H5A GAS sing 109 n n C6A H6A GAS sing 110 n n C8 N8 GAS doub 111 n n C8 N11 GAS sing 112 n n N8 C9 GAS sing 113 n n C9 C10 GAS sing 114 n n C9 H91 GAS sing 115 n n C9 H92 GAS sing 116 n n C10 O1 GAS doub 117 n n C10 O2 GAS sing 118 n n O2 HO2 GAS sing 119 n n N11 C1B GAS sing 120 n n N11 HN1 GAS sing 121 n n C1B C2B GAS sing 122 n y C1B C6B GAS doub 123 n y C2B C3B GAS doub 124 n y C2B H2B GAS sing 125 n n C3B C4B GAS sing 126 n y C3B H3B GAS sing 127 n n C4B C7B GAS sing 128 n n C4B C5B GAS doub 129 n y C7B N7B GAS trip 130 n n C5B C6B GAS sing 131 n y C5B H5B GAS sing 132 n n C6B H6B GAS sing 133 n n # _atom_sites.entry_id 2CGR _atom_sites.fract_transf_matrix[1][1] 0.007634 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008764 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02681 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GAS H 1 215 1 GAS GAS . D 4 HOH L 1 220 1 HOH HOH . D 4 HOH L 2 221 2 HOH HOH . D 4 HOH L 3 222 3 HOH HOH . D 4 HOH L 4 223 4 HOH HOH . D 4 HOH L 5 224 5 HOH HOH . D 4 HOH L 6 225 6 HOH HOH . D 4 HOH L 7 226 7 HOH HOH . D 4 HOH L 8 227 8 HOH HOH . D 4 HOH L 9 228 9 HOH HOH . D 4 HOH L 10 229 10 HOH HOH . D 4 HOH L 11 230 14 HOH HOH . D 4 HOH L 12 231 20 HOH HOH . D 4 HOH L 13 232 31 HOH HOH . D 4 HOH L 14 233 34 HOH HOH . D 4 HOH L 15 234 36 HOH HOH . D 4 HOH L 16 235 37 HOH HOH . D 4 HOH L 17 236 39 HOH HOH . D 4 HOH L 18 237 41 HOH HOH . D 4 HOH L 19 238 42 HOH HOH . D 4 HOH L 20 239 43 HOH HOH . D 4 HOH L 21 240 45 HOH HOH . D 4 HOH L 22 241 46 HOH HOH . D 4 HOH L 23 242 48 HOH HOH . D 4 HOH L 24 243 49 HOH HOH . D 4 HOH L 25 244 50 HOH HOH . D 4 HOH L 26 245 53 HOH HOH . D 4 HOH L 27 246 54 HOH HOH . D 4 HOH L 28 247 55 HOH HOH . D 4 HOH L 29 248 57 HOH HOH . D 4 HOH L 30 249 60 HOH HOH . D 4 HOH L 31 250 61 HOH HOH . D 4 HOH L 32 251 65 HOH HOH . D 4 HOH L 33 252 68 HOH HOH . D 4 HOH L 34 253 79 HOH HOH . D 4 HOH L 35 254 80 HOH HOH . D 4 HOH L 36 255 81 HOH HOH . D 4 HOH L 37 256 82 HOH HOH . D 4 HOH L 38 257 83 HOH HOH . D 4 HOH L 39 258 84 HOH HOH . D 4 HOH L 40 259 86 HOH HOH . D 4 HOH L 41 260 89 HOH HOH . D 4 HOH L 42 261 92 HOH HOH . D 4 HOH L 43 262 93 HOH HOH . D 4 HOH L 44 263 94 HOH HOH . D 4 HOH L 45 264 95 HOH HOH . D 4 HOH L 46 265 98 HOH HOH . D 4 HOH L 47 266 100 HOH HOH . D 4 HOH L 48 267 101 HOH HOH . D 4 HOH L 49 268 102 HOH HOH . D 4 HOH L 50 269 109 HOH HOH . D 4 HOH L 51 270 110 HOH HOH . D 4 HOH L 52 271 115 HOH HOH . D 4 HOH L 53 272 120 HOH HOH . D 4 HOH L 54 273 121 HOH HOH . D 4 HOH L 55 274 122 HOH HOH . D 4 HOH L 56 275 123 HOH HOH . D 4 HOH L 57 276 124 HOH HOH . D 4 HOH L 58 277 125 HOH HOH . D 4 HOH L 59 278 128 HOH HOH . D 4 HOH L 60 279 129 HOH HOH . D 4 HOH L 61 280 130 HOH HOH . D 4 HOH L 62 281 131 HOH HOH . D 4 HOH L 63 282 132 HOH HOH . D 4 HOH L 64 283 133 HOH HOH . D 4 HOH L 65 284 135 HOH HOH . D 4 HOH L 66 285 136 HOH HOH . D 4 HOH L 67 286 140 HOH HOH . D 4 HOH L 68 287 142 HOH HOH . D 4 HOH L 69 288 143 HOH HOH . D 4 HOH L 70 289 144 HOH HOH . D 4 HOH L 71 290 145 HOH HOH . D 4 HOH L 72 291 146 HOH HOH . D 4 HOH L 73 292 151 HOH HOH . D 4 HOH L 74 293 152 HOH HOH . D 4 HOH L 75 294 153 HOH HOH . D 4 HOH L 76 295 154 HOH HOH . D 4 HOH L 77 296 155 HOH HOH . D 4 HOH L 78 297 157 HOH HOH . D 4 HOH L 79 298 162 HOH HOH . D 4 HOH L 80 299 163 HOH HOH . D 4 HOH L 81 300 164 HOH HOH . D 4 HOH L 82 301 165 HOH HOH . D 4 HOH L 83 302 166 HOH HOH . D 4 HOH L 84 303 167 HOH HOH . D 4 HOH L 85 304 168 HOH HOH . D 4 HOH L 86 305 169 HOH HOH . D 4 HOH L 87 306 170 HOH HOH . D 4 HOH L 88 307 171 HOH HOH . D 4 HOH L 89 308 172 HOH HOH . E 4 HOH H 1 216 11 HOH HOH . E 4 HOH H 2 217 12 HOH HOH . E 4 HOH H 3 218 13 HOH HOH . E 4 HOH H 4 219 15 HOH HOH . E 4 HOH H 5 220 16 HOH HOH . E 4 HOH H 6 221 17 HOH HOH . E 4 HOH H 7 222 18 HOH HOH . E 4 HOH H 8 223 19 HOH HOH . E 4 HOH H 9 224 21 HOH HOH . E 4 HOH H 10 225 22 HOH HOH . E 4 HOH H 11 226 23 HOH HOH . E 4 HOH H 12 227 24 HOH HOH . E 4 HOH H 13 228 25 HOH HOH . E 4 HOH H 14 229 26 HOH HOH . E 4 HOH H 15 230 27 HOH HOH . E 4 HOH H 16 231 28 HOH HOH . E 4 HOH H 17 232 29 HOH HOH . E 4 HOH H 18 233 30 HOH HOH . E 4 HOH H 19 234 32 HOH HOH . E 4 HOH H 20 235 33 HOH HOH . E 4 HOH H 21 236 35 HOH HOH . E 4 HOH H 22 237 38 HOH HOH . E 4 HOH H 23 238 40 HOH HOH . E 4 HOH H 24 239 44 HOH HOH . E 4 HOH H 25 240 47 HOH HOH . E 4 HOH H 26 241 51 HOH HOH . E 4 HOH H 27 242 52 HOH HOH . E 4 HOH H 28 243 56 HOH HOH . E 4 HOH H 29 244 58 HOH HOH . E 4 HOH H 30 245 59 HOH HOH . E 4 HOH H 31 246 62 HOH HOH . E 4 HOH H 32 247 63 HOH HOH . E 4 HOH H 33 248 64 HOH HOH . E 4 HOH H 34 249 66 HOH HOH . E 4 HOH H 35 250 67 HOH HOH . E 4 HOH H 36 251 69 HOH HOH . E 4 HOH H 37 252 70 HOH HOH . E 4 HOH H 38 253 71 HOH HOH . E 4 HOH H 39 254 72 HOH HOH . E 4 HOH H 40 255 73 HOH HOH . E 4 HOH H 41 256 74 HOH HOH . E 4 HOH H 42 257 75 HOH HOH . E 4 HOH H 43 258 76 HOH HOH . E 4 HOH H 44 259 77 HOH HOH . E 4 HOH H 45 260 78 HOH HOH . E 4 HOH H 46 261 85 HOH HOH . E 4 HOH H 47 262 87 HOH HOH . E 4 HOH H 48 263 88 HOH HOH . E 4 HOH H 49 264 90 HOH HOH . E 4 HOH H 50 265 91 HOH HOH . E 4 HOH H 51 266 96 HOH HOH . E 4 HOH H 52 267 97 HOH HOH . E 4 HOH H 53 268 99 HOH HOH . E 4 HOH H 54 269 103 HOH HOH . E 4 HOH H 55 270 104 HOH HOH . E 4 HOH H 56 271 105 HOH HOH . E 4 HOH H 57 272 106 HOH HOH . E 4 HOH H 58 273 107 HOH HOH . E 4 HOH H 59 274 108 HOH HOH . E 4 HOH H 60 275 111 HOH HOH . E 4 HOH H 61 276 112 HOH HOH . E 4 HOH H 62 277 113 HOH HOH . E 4 HOH H 63 278 114 HOH HOH . E 4 HOH H 64 279 116 HOH HOH . E 4 HOH H 65 280 117 HOH HOH . E 4 HOH H 66 281 118 HOH HOH . E 4 HOH H 67 282 119 HOH HOH . E 4 HOH H 68 283 126 HOH HOH . E 4 HOH H 69 284 127 HOH HOH . E 4 HOH H 70 285 134 HOH HOH . E 4 HOH H 71 286 137 HOH HOH . E 4 HOH H 72 287 138 HOH HOH . E 4 HOH H 73 288 139 HOH HOH . E 4 HOH H 74 289 141 HOH HOH . E 4 HOH H 75 290 147 HOH HOH . E 4 HOH H 76 291 148 HOH HOH . E 4 HOH H 77 292 149 HOH HOH . E 4 HOH H 78 293 150 HOH HOH . E 4 HOH H 79 294 156 HOH HOH . E 4 HOH H 80 295 158 HOH HOH . E 4 HOH H 81 296 159 HOH HOH . E 4 HOH H 82 297 160 HOH HOH . E 4 HOH H 83 298 161 HOH HOH . E 4 HOH H 84 299 173 HOH HOH . E 4 HOH H 85 300 174 HOH HOH . E 4 HOH H 86 301 175 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GAS . . . C 3 -13.213 38.043 17.618 1 20.06 ? C1 GAS 215 H 1 HETATM 2 C C2 GAS . . . C 3 -13.567 36.707 17.787 1 22.97 ? C2 GAS 215 H 1 HETATM 3 C C3 GAS . . . C 3 -12.692 35.827 18.399 1 20.9 ? C3 GAS 215 H 1 HETATM 4 C C4 GAS . . . C 3 -11.472 36.284 18.847 1 15.93 ? C4 GAS 215 H 1 HETATM 5 C C5 GAS . . . C 3 -11.126 37.609 18.68 1 15.68 ? C5 GAS 215 H 1 HETATM 6 C C6 GAS . . . C 3 -11.982 38.5 18.062 1 14.85 ? C6 GAS 215 H 1 HETATM 7 C C7 GAS . . . C 3 -11.51 39.783 17.777 1 16.01 ? C7 GAS 215 H 1 HETATM 8 N N7 GAS . . . C 3 -10.187 39.764 17.158 1 17.78 ? N7 GAS 215 H 1 HETATM 9 C C1A GAS . . . C 3 -12.437 40.612 17.142 1 17.56 ? C1A GAS 215 H 1 HETATM 10 C C2A GAS . . . C 3 -12.706 40.449 15.779 1 18.09 ? C2A GAS 215 H 1 HETATM 11 C C3A GAS . . . C 3 -13.427 41.402 15.102 1 14.77 ? C3A GAS 215 H 1 HETATM 12 C C4A GAS . . . C 3 -13.894 42.527 15.765 1 13.04 ? C4A GAS 215 H 1 HETATM 13 C C5A GAS . . . C 3 -13.654 42.701 17.114 1 14.36 ? C5A GAS 215 H 1 HETATM 14 C C6A GAS . . . C 3 -12.932 41.748 17.805 1 20.38 ? C6A GAS 215 H 1 HETATM 15 C C8 GAS . . . C 3 -9.236 40.666 17.336 1 15 ? C8 GAS 215 H 1 HETATM 16 N N8 GAS . . . C 3 -9.548 41.889 17.732 1 17.53 ? N8 GAS 215 H 1 HETATM 17 C C9 GAS . . . C 3 -8.798 42.671 18.704 1 16.42 ? C9 GAS 215 H 1 HETATM 18 C C10 GAS . . . C 3 -9.559 43.61 19.614 1 21.85 ? C10 GAS 215 H 1 HETATM 19 O O1 GAS . . . C 3 -8.923 44.493 20.231 1 21.52 ? O1 GAS 215 H 1 HETATM 20 O O2 GAS . . . C 3 -10.802 43.659 19.468 1 22.73 ? O2 GAS 215 H 1 HETATM 21 N N11 GAS . . . C 3 -8.102 40.452 16.753 1 14.87 ? N11 GAS 215 H 1 HETATM 22 C C1B GAS . . . C 3 -7.243 39.255 16.565 1 14.94 ? C1B GAS 215 H 1 HETATM 23 C C2B GAS . . . C 3 -7.256 38.222 17.479 1 15.75 ? C2B GAS 215 H 1 HETATM 24 C C3B GAS . . . C 3 -6.431 37.125 17.295 1 14.15 ? C3B GAS 215 H 1 HETATM 25 C C4B GAS . . . C 3 -5.598 37.063 16.194 1 13.02 ? C4B GAS 215 H 1 HETATM 26 C C7B GAS . . . C 3 -4.697 35.872 15.968 1 9.31 ? C7B GAS 215 H 1 HETATM 27 N N7B GAS . . . C 3 -4.006 34.958 15.8 1 17.47 ? N7B GAS 215 H 1 HETATM 28 C C5B GAS . . . C 3 -5.596 38.083 15.291 1 16.52 ? C5B GAS 215 H 1 HETATM 29 C C6B GAS . . . C 3 -6.42 39.179 15.472 1 18.34 ? C6B GAS 215 H 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 29 #