data_2CGZ # _model_server_result.job_id Cr8NEFrH6RODqn1-HZaIdg _model_server_result.datetime_utc '2024-11-23 03:18:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2cgz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1101}' # _entry.id 2CGZ # _exptl.entry_id 2CGZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2CGZ _cell.length_a 62.1 _cell.length_b 62.1 _cell.length_c 106.2 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CGZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -31.05 53.780178 0 3 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 31.05 53.780178 0 4 'crystal symmetry operation' 10_664 -y+1,-x+1,-z-1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 31.05 53.780178 -53.1 5 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -31.05 53.780178 -53.1 6 'crystal symmetry operation' 11_554 -x+y,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -53.1 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 9 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? covale ? covale1 A ND2 ASN 34 A ASN 34 1_555 B C1 NAG . A NAG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 C OG SER . A SER 1102 1_555 D C1 A2G . A A2G 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 sing # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 267 n n C1 O1 NAG sing 268 n n C1 O5 NAG sing 269 n n C1 H1 NAG sing 270 n n C2 C3 NAG sing 271 n n C2 N2 NAG sing 272 n n C2 H2 NAG sing 273 n n C3 C4 NAG sing 274 n n C3 O3 NAG sing 275 n n C3 H3 NAG sing 276 n n C4 C5 NAG sing 277 n n C4 O4 NAG sing 278 n n C4 H4 NAG sing 279 n n C5 C6 NAG sing 280 n n C5 O5 NAG sing 281 n n C5 H5 NAG sing 282 n n C6 O6 NAG sing 283 n n C6 H61 NAG sing 284 n n C6 H62 NAG sing 285 n n C7 C8 NAG sing 286 n n C7 N2 NAG sing 287 n n C7 O7 NAG doub 288 n n C8 H81 NAG sing 289 n n C8 H82 NAG sing 290 n n C8 H83 NAG sing 291 n n N2 HN2 NAG sing 292 n n O1 HO1 NAG sing 293 n n O3 HO3 NAG sing 294 n n O4 HO4 NAG sing 295 n n O6 HO6 NAG sing 296 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2CGZ _atom_sites.fract_transf_matrix[1][1] 0.016103 _atom_sites.fract_transf_matrix[1][2] 0.009297 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018594 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009416 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 1101 1101 NAG NAG . C 3 SER A 1 1102 1102 SER TNR . D 4 A2G A 1 1103 1102 A2G TNR . E 5 HOH A 1 1201 2003 HOH HOH . E 5 HOH A 2 1202 2006 HOH HOH . E 5 HOH A 3 1203 2002 HOH HOH . E 5 HOH A 4 1204 2007 HOH HOH . E 5 HOH A 5 1205 2004 HOH HOH . E 5 HOH A 6 1206 2005 HOH HOH . E 5 HOH A 7 1207 2001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 -18.132 49.291 -6.775 1 85.66 ? C1 NAG 1101 A 1 HETATM 2 C C2 NAG . . . B 2 -19.477 48.908 -7.411 1 86.91 ? C2 NAG 1101 A 1 HETATM 3 C C3 NAG . . . B 2 -20.623 49.675 -6.761 1 87.1 ? C3 NAG 1101 A 1 HETATM 4 C C4 NAG . . . B 2 -20.603 49.444 -5.258 1 87.47 ? C4 NAG 1101 A 1 HETATM 5 C C5 NAG . . . B 2 -19.242 49.874 -4.704 1 87.12 ? C5 NAG 1101 A 1 HETATM 6 C C6 NAG . . . B 2 -19.131 49.661 -3.191 1 87.2 ? C6 NAG 1101 A 1 HETATM 7 C C7 NAG . . . B 2 -20.053 48.315 -9.715 1 87.72 ? C7 NAG 1101 A 1 HETATM 8 C C8 NAG . . . B 2 -19.38 48.181 -11.052 1 87.66 ? C8 NAG 1101 A 1 HETATM 9 N N2 NAG . . . B 2 -19.483 49.157 -8.845 1 87.36 ? N2 NAG 1101 A 1 HETATM 10 O O3 NAG . . . B 2 -21.859 49.259 -7.293 1 86.8 ? O3 NAG 1101 A 1 HETATM 11 O O4 NAG . . . B 2 -21.65 50.183 -4.663 1 88.14 ? O4 NAG 1101 A 1 HETATM 12 O O5 NAG . . . B 2 -18.197 49.167 -5.357 1 86.58 ? O5 NAG 1101 A 1 HETATM 13 O O6 NAG . . . B 2 -19.558 48.366 -2.811 1 86.92 ? O6 NAG 1101 A 1 HETATM 14 O O7 NAG . . . B 2 -21.076 47.669 -9.468 1 87.57 ? O7 NAG 1101 A 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #