data_2CH4 # _model_server_result.job_id PWTgvhyR3ZTzENFaR7QO6g _model_server_result.datetime_utc '2025-03-27 13:04:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ch4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1672}' # _entry.id 2CH4 # _exptl.entry_id 2CH4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2CH4 _cell.length_a 136.6 _cell.length_b 136.6 _cell.length_c 231.3 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CH4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,G 1 1 B,D,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2CH4 _atom_sites.fract_transf_matrix[1][1] 0.007321 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007321 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004323 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ANP A 1 1672 1672 ANP ANP . F 3 ANP B 1 1672 1672 ANP ANP . G 4 HOH A 1 2001 2001 HOH HOH . G 4 HOH A 2 2002 2002 HOH HOH . G 4 HOH A 3 2003 2003 HOH HOH . G 4 HOH A 4 2004 2004 HOH HOH . G 4 HOH A 5 2005 2005 HOH HOH . G 4 HOH A 6 2006 2006 HOH HOH . H 4 HOH B 1 2001 2001 HOH HOH . H 4 HOH B 2 2002 2002 HOH HOH . H 4 HOH B 3 2003 2003 HOH HOH . H 4 HOH B 4 2004 2004 HOH HOH . H 4 HOH B 5 2005 2005 HOH HOH . H 4 HOH B 6 2006 2006 HOH HOH . H 4 HOH B 7 2007 2007 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 3 23.926 52.798 9.018 1 165.48 ? PG ANP 1672 A 1 HETATM 2 O O1G ANP . . . E 3 23.101 53.804 8.141 1 165.64 ? O1G ANP 1672 A 1 HETATM 3 O O2G ANP . . . E 3 24.854 51.982 8.202 1 162.93 ? O2G ANP 1672 A 1 HETATM 4 O O3G ANP . . . E 3 24.357 53.309 10.369 1 164.47 ? O3G ANP 1672 A 1 HETATM 5 P PB ANP . . . E 3 23.329 50.392 10.558 1 133.81 ? PB ANP 1672 A 1 HETATM 6 O O1B ANP . . . E 3 22.228 50.237 11.633 1 133.47 ? O1B ANP 1672 A 1 HETATM 7 O O2B ANP . . . E 3 24.628 50.402 11.099 1 133.4 ? O2B ANP 1672 A 1 HETATM 8 N N3B ANP . . . E 3 22.883 51.654 9.728 1 149.43 ? N3B ANP 1672 A 1 HETATM 9 P PA ANP . . . E 3 22.897 47.499 10.01 1 114.86 ? PA ANP 1672 A 1 HETATM 10 O O1A ANP . . . E 3 22.867 46.883 8.639 1 113.37 ? O1A ANP 1672 A 1 HETATM 11 O O2A ANP . . . E 3 21.641 47.444 10.782 1 114.89 ? O2A ANP 1672 A 1 HETATM 12 O O3A ANP . . . E 3 23.294 48.971 9.807 1 123.21 ? O3A ANP 1672 A 1 HETATM 13 O O5' ANP . . . E 3 24.277 46.974 10.628 1 111.77 ? O5' ANP 1672 A 1 HETATM 14 C C5' ANP . . . E 3 24.5 47.464 11.963 1 101.97 ? C5' ANP 1672 A 1 HETATM 15 C C4' ANP . . . E 3 25.659 47.145 12.942 1 100.01 ? C4' ANP 1672 A 1 HETATM 16 O O4' ANP . . . E 3 26.457 46.114 12.463 1 93.2 ? O4' ANP 1672 A 1 HETATM 17 C C3' ANP . . . E 3 26.389 48.395 12.577 1 100.79 ? C3' ANP 1672 A 1 HETATM 18 O O3' ANP . . . E 3 25.95 49.436 13.426 1 105.59 ? O3' ANP 1672 A 1 HETATM 19 C C2' ANP . . . E 3 27.876 48.027 12.629 1 100.97 ? C2' ANP 1672 A 1 HETATM 20 O O2' ANP . . . E 3 28.382 48.31 13.922 1 102.26 ? O2' ANP 1672 A 1 HETATM 21 C C1' ANP . . . E 3 27.781 46.595 12.291 1 98.23 ? C1' ANP 1672 A 1 HETATM 22 N N9 ANP . . . E 3 28.268 46.128 10.922 1 95.92 ? N9 ANP 1672 A 1 HETATM 23 C C8 ANP . . . E 3 27.628 45.549 9.892 1 96.31 ? C8 ANP 1672 A 1 HETATM 24 N N7 ANP . . . E 3 28.374 45.26 8.832 1 96.18 ? N7 ANP 1672 A 1 HETATM 25 C C5 ANP . . . E 3 29.577 45.673 9.229 1 92.86 ? C5 ANP 1672 A 1 HETATM 26 C C6 ANP . . . E 3 30.875 45.684 8.635 1 90.74 ? C6 ANP 1672 A 1 HETATM 27 N N6 ANP . . . E 3 31.088 45.194 7.393 1 94.47 ? N6 ANP 1672 A 1 HETATM 28 N N1 ANP . . . E 3 31.948 46.199 9.301 1 90.33 ? N1 ANP 1672 A 1 HETATM 29 C C2 ANP . . . E 3 31.78 46.699 10.545 1 94.32 ? C2 ANP 1672 A 1 HETATM 30 N N3 ANP . . . E 3 30.592 46.723 11.19 1 93.28 ? N3 ANP 1672 A 1 HETATM 31 C C4 ANP . . . E 3 29.551 46.221 10.506 1 93.17 ? C4 ANP 1672 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #