data_2CH4
#
_model_server_result.job_id            lFjGEgL5Qq3mvuaGA4mOUg 
_model_server_result.datetime_utc      '2025-03-27 17:35:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2ch4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1672}' 
#
_entry.id    2CH4 
#
_exptl.entry_id    2CH4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2CH4 
_cell.length_a            136.6 
_cell.length_b            136.6 
_cell.length_c            231.3 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2CH4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS dimeric 2 author_and_software_defined_assembly 1 
PQS dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,G 1 1 
B,D,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     2CH4 
_atom_sites.fract_transf_matrix[1][1]    0.007321 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007321 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004323 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 ANP A 1 1672 1672 ANP ANP . 
F 3 ANP B 1 1672 1672 ANP ANP . 
G 4 HOH A 1 2001 2001 HOH HOH . 
G 4 HOH A 2 2002 2002 HOH HOH . 
G 4 HOH A 3 2003 2003 HOH HOH . 
G 4 HOH A 4 2004 2004 HOH HOH . 
G 4 HOH A 5 2005 2005 HOH HOH . 
G 4 HOH A 6 2006 2006 HOH HOH . 
H 4 HOH B 1 2001 2001 HOH HOH . 
H 4 HOH B 2 2002 2002 HOH HOH . 
H 4 HOH B 3 2003 2003 HOH HOH . 
H 4 HOH B 4 2004 2004 HOH HOH . 
H 4 HOH B 5 2005 2005 HOH HOH . 
H 4 HOH B 6 2006 2006 HOH HOH . 
H 4 HOH B 7 2007 2007 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . F 3 18.224 25.263 -52.546 1 284.98 ? PG ANP 1672 B 1 
HETATM 2 O O1G ANP . . . F 3 19.041 26.509 -53.005 1 284.57 ? O1G ANP 1672 B 1 
HETATM 3 O O2G ANP . . . F 3 17.739 25.406 -51.174 1 285.8 ? O2G ANP 1672 B 1 
HETATM 4 O O3G ANP . . . F 3 17.329 24.634 -53.6 1 285.16 ? O3G ANP 1672 B 1 
HETATM 5 P PB ANP . . . F 3 19.111 22.662 -51.512 1 279.05 ? PB ANP 1672 B 1 
HETATM 6 O O1B ANP . . . F 3 20.221 21.67 -52.031 1 279.38 ? O1B ANP 1672 B 1 
HETATM 7 O O2B ANP . . . F 3 17.826 22.003 -51.479 1 278.73 ? O2B ANP 1672 B 1 
HETATM 8 N N3B ANP . . . F 3 19.243 23.903 -52.486 1 282.08 ? N3B ANP 1672 B 1 
HETATM 9 P PA ANP . . . F 3 18.973 22.78 -48.445 1 271.32 ? PA ANP 1672 B 1 
HETATM 10 O O1A ANP . . . F 3 17.488 23.07 -48.338 1 271.45 ? O1A ANP 1672 B 1 
HETATM 11 O O2A ANP . . . F 3 19.798 23.596 -47.514 1 271.17 ? O2A ANP 1672 B 1 
HETATM 12 O O3A ANP . . . F 3 19.496 22.904 -49.925 1 275.17 ? O3A ANP 1672 B 1 
HETATM 13 O O5' ANP . . . F 3 18.99 21.184 -48.373 1 270.73 ? O5' ANP 1672 B 1 
HETATM 14 C C5' ANP . . . F 3 20.328 20.647 -48.473 1 268.89 ? C5' ANP 1672 B 1 
HETATM 15 C C4' ANP . . . F 3 20.85 19.254 -48.026 1 267.41 ? C4' ANP 1672 B 1 
HETATM 16 O O4' ANP . . . F 3 19.923 18.614 -47.197 1 265.46 ? O4' ANP 1672 B 1 
HETATM 17 C C3' ANP . . . F 3 20.607 18.664 -49.375 1 267.06 ? C3' ANP 1672 B 1 
HETATM 18 O O3' ANP . . . F 3 21.756 18.857 -50.171 1 268.21 ? O3' ANP 1672 B 1 
HETATM 19 C C2' ANP . . . F 3 20.147 17.22 -49.106 1 265.69 ? C2' ANP 1672 B 1 
HETATM 20 O O2' ANP . . . F 3 21.275 16.373 -49.101 1 265.89 ? O2' ANP 1672 B 1 
HETATM 21 C C1' ANP . . . F 3 19.504 17.402 -47.795 1 263.66 ? C1' ANP 1672 B 1 
HETATM 22 N N9 ANP . . . F 3 17.983 17.349 -47.702 1 260.05 ? N9 ANP 1672 B 1 
HETATM 23 C C8 ANP . . . F 3 17.074 18.263 -47.325 1 258.64 ? C8 ANP 1672 B 1 
HETATM 24 N N7 ANP . . . F 3 15.805 17.873 -47.352 1 256.89 ? N7 ANP 1672 B 1 
HETATM 25 C C5 ANP . . . F 3 15.926 16.632 -47.78 1 255.99 ? C5 ANP 1672 B 1 
HETATM 26 C C6 ANP . . . F 3 15.009 15.595 -48.05 1 254.73 ? C6 ANP 1672 B 1 
HETATM 27 N N6 ANP . . . F 3 13.7 15.752 -47.877 1 254.14 ? N6 ANP 1672 B 1 
HETATM 28 N N1 ANP . . . F 3 15.423 14.393 -48.478 1 254.57 ? N1 ANP 1672 B 1 
HETATM 29 C C2 ANP . . . F 3 16.73 14.176 -48.669 1 255.63 ? C2 ANP 1672 B 1 
HETATM 30 N N3 ANP . . . F 3 17.682 15.101 -48.43 1 256.72 ? N3 ANP 1672 B 1 
HETATM 31 C C4 ANP . . . F 3 17.244 16.273 -48.005 1 257.53 ? C4 ANP 1672 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#