data_2CIF # _model_server_result.job_id uaxNPCuVHwSFZbkVeYXPMg _model_server_result.datetime_utc '2024-10-12 21:17:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2cif # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1066}' # _entry.id 2CIF # _exptl.entry_id 2CIF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2CIF _cell.length_a 141.82 _cell.length_b 141.82 _cell.length_c 141.82 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CIF _symmetry.cell_setting ? _symmetry.Int_Tables_number 210 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'F 41 3 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 4 'crystal symmetry operation' 80_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 5 'crystal symmetry operation' 59_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 6 'crystal symmetry operation' 82_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 7 'crystal symmetry operation' 52_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 75_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 9 'crystal symmetry operation' 54_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 10 'crystal symmetry operation' 36_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 11 'crystal symmetry operation' 31_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 12 'crystal symmetry operation' 26_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 14 A GLU 14 1_555 B MG MG . A MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc2 A OD2 ASP 21 A ASP 21 24_555 B MG MG . A MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? metalc ? metalc3 A OD2 ASP 41 A ASP 41 80_555 C MG MG . A MG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc4 A OE1 GLU 57 A GLU 57 80_555 C MG MG . A MG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc5 D NA NA . A NA 103 1_555 H O HOH . A HOH 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 70 n n PA O2A FAD sing 71 n n PA O5B FAD sing 72 n n PA O3P FAD sing 73 n n O2A HOA2 FAD sing 74 n n O5B C5B FAD sing 75 n n C5B C4B FAD sing 76 n n C5B H51A FAD sing 77 n n C5B H52A FAD sing 78 n n C4B O4B FAD sing 79 n n C4B C3B FAD sing 80 n n C4B H4B FAD sing 81 n n O4B C1B FAD sing 82 n n C3B O3B FAD sing 83 n n C3B C2B FAD sing 84 n n C3B H3B FAD sing 85 n n O3B HO3A FAD sing 86 n n C2B O2B FAD sing 87 n n C2B C1B FAD sing 88 n n C2B H2B FAD sing 89 n n O2B HO2A FAD sing 90 n n C1B N9A FAD sing 91 n n C1B H1B FAD sing 92 n n N9A C8A FAD sing 93 n y N9A C4A FAD sing 94 n y C8A N7A FAD doub 95 n y C8A H8A FAD sing 96 n n N7A C5A FAD sing 97 n y C5A C6A FAD sing 98 n y C5A C4A FAD doub 99 n y C6A N6A FAD sing 100 n n C6A N1A FAD doub 101 n y N6A H61A FAD sing 102 n n N6A H62A FAD sing 103 n n N1A C2A FAD sing 104 n y C2A N3A FAD doub 105 n y C2A H2A FAD sing 106 n n N3A C4A FAD sing 107 n y N1 C2 FAD sing 108 n n N1 C10 FAD doub 109 n n C2 O2 FAD doub 110 n n C2 N3 FAD sing 111 n n N3 C4 FAD sing 112 n n N3 HN3 FAD sing 113 n n C4 O4 FAD doub 114 n n C4 C4X FAD sing 115 n n C4X N5 FAD doub 116 n n C4X C10 FAD sing 117 n n N5 C5X FAD sing 118 n n C5X C6 FAD doub 119 n y C5X C9A FAD sing 120 n y C6 C7 FAD sing 121 n y C6 H6 FAD sing 122 n n C7 C7M FAD sing 123 n n C7 C8 FAD doub 124 n y C7M HM71 FAD sing 125 n n C7M HM72 FAD sing 126 n n C7M HM73 FAD sing 127 n n C8 C8M FAD sing 128 n n C8 C9 FAD sing 129 n y C8M HM81 FAD sing 130 n n C8M HM82 FAD sing 131 n n C8M HM83 FAD sing 132 n n C9 C9A FAD doub 133 n y C9 H9 FAD sing 134 n n C9A N10 FAD sing 135 n n N10 C10 FAD sing 136 n n N10 C1' FAD sing 137 n n C1' C2' FAD sing 138 n n C1' "H1'1" FAD sing 139 n n C1' "H1'2" FAD sing 140 n n C2' O2' FAD sing 141 n n C2' C3' FAD sing 142 n n C2' H2' FAD sing 143 n n O2' HO2' FAD sing 144 n n C3' O3' FAD sing 145 n n C3' C4' FAD sing 146 n n C3' H3' FAD sing 147 n n O3' HO3' FAD sing 148 n n C4' O4' FAD sing 149 n n C4' C5' FAD sing 150 n n C4' H4' FAD sing 151 n n O4' HO4' FAD sing 152 n n C5' O5' FAD sing 153 n n C5' "H5'1" FAD sing 154 n n C5' "H5'2" FAD sing 155 n n O5' P FAD sing 156 n n P O1P FAD doub 157 n n P O2P FAD sing 158 n n P O3P FAD sing 159 n n O2P HOP2 FAD sing 160 n n # _atom_sites.entry_id 2CIF _atom_sites.fract_transf_matrix[1][1] 0.007051 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007051 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007051 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 101 101 MG MG . C 2 MG A 1 102 102 MG MG . D 3 NA A 1 103 103 NA NA . E 4 CL A 1 105 105 CL CL . F 5 SO4 A 1 300 300 SO4 SO4 . G 6 FAD A 1 1066 1066 FAD FAD . H 7 HOH A 1 2001 2001 HOH HOH . H 7 HOH A 2 2002 2002 HOH HOH . H 7 HOH A 3 2003 2003 HOH HOH . H 7 HOH A 4 2004 2004 HOH HOH . H 7 HOH A 5 2005 2005 HOH HOH . H 7 HOH A 6 2006 2006 HOH HOH . H 7 HOH A 7 2007 2007 HOH HOH . H 7 HOH A 8 2008 2008 HOH HOH . H 7 HOH A 9 2009 2009 HOH HOH . H 7 HOH A 10 2010 2010 HOH HOH . H 7 HOH A 11 2011 2011 HOH HOH . H 7 HOH A 12 2012 2012 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B FAD . . . G 6 -0.153 25.232 3.656 0.5 47.66 ? C1B FAD 1066 A 1 HETATM 2 N N9A FAD . . . G 6 0.026 23.726 3.666 0.5 48.73 ? N9A FAD 1066 A 1 HETATM 3 C C8A FAD . . . G 6 0.654 22.813 4.466 0.5 49.58 ? C8A FAD 1066 A 1 HETATM 4 N N7A FAD . . . G 6 0.462 21.508 4.054 0.5 50.52 ? N7A FAD 1066 A 1 HETATM 5 C C5A FAD . . . G 6 -0.325 21.661 2.915 0.5 49.96 ? C5A FAD 1066 A 1 HETATM 6 C C6A FAD . . . G 6 -0.851 20.766 2.005 0.5 49.24 ? C6A FAD 1066 A 1 HETATM 7 N N6A FAD . . . G 6 -0.65 19.447 2.13 0.5 51.68 ? N6A FAD 1066 A 1 HETATM 8 N N1A FAD . . . G 6 -1.569 21.206 0.96 0.5 51.68 ? N1A FAD 1066 A 1 HETATM 9 C C2A FAD . . . G 6 -1.795 22.531 0.793 0.5 51.67 ? C2A FAD 1066 A 1 HETATM 10 N N3A FAD . . . G 6 -1.298 23.417 1.672 0.5 51.13 ? N3A FAD 1066 A 1 HETATM 11 C C4A FAD . . . G 6 -0.544 22.98 2.716 0.5 49.65 ? C4A FAD 1066 A 1 HETATM 12 N N1 FAD . . . G 6 -0.037 22.7 -2.904 0.5 15.23 ? N1 FAD 1066 A 1 HETATM 13 C C2 FAD . . . G 6 -0.735 22.241 -4.03 0.5 16.76 ? C2 FAD 1066 A 1 HETATM 14 O O2 FAD . . . G 6 -1.299 22.997 -4.811 0.5 15.9 ? O2 FAD 1066 A 1 HETATM 15 N N3 FAD . . . G 6 -0.812 20.968 -4.432 0.5 12.77 ? N3 FAD 1066 A 1 HETATM 16 C C4 FAD . . . G 6 -0.201 20.053 -3.706 0.5 10.14 ? C4 FAD 1066 A 1 HETATM 17 O O4 FAD . . . G 6 -0.355 18.885 -4.104 0.5 15.65 ? O4 FAD 1066 A 1 HETATM 18 C C4X FAD . . . G 6 0.554 20.432 -2.481 0.5 10.11 ? C4X FAD 1066 A 1 HETATM 19 N N5 FAD . . . G 6 1.114 19.499 -1.675 0.5 16.46 ? N5 FAD 1066 A 1 HETATM 20 C C5X FAD . . . G 6 1.833 19.729 -0.548 0.5 14.67 ? C5X FAD 1066 A 1 HETATM 21 C C6 FAD . . . G 6 2.397 18.685 0.196 0.5 16.58 ? C6 FAD 1066 A 1 HETATM 22 C C7 FAD . . . G 6 3.103 18.952 1.383 0.5 14.22 ? C7 FAD 1066 A 1 HETATM 23 C C7M FAD . . . G 6 3.735 17.827 2.151 0.5 10.16 ? C7M FAD 1066 A 1 HETATM 24 C C8 FAD . . . G 6 3.248 20.374 1.814 0.5 10.56 ? C8 FAD 1066 A 1 HETATM 25 C C8M FAD . . . G 6 4.026 20.791 3.04 0.5 10.21 ? C8M FAD 1066 A 1 HETATM 26 C C9 FAD . . . G 6 2.707 21.379 1.071 0.5 8.56 ? C9 FAD 1066 A 1 HETATM 27 C C9A FAD . . . G 6 1.959 21.109 -0.078 0.5 13.08 ? C9A FAD 1066 A 1 HETATM 28 N N10 FAD . . . G 6 1.314 22.135 -0.845 0.5 16.29 ? N10 FAD 1066 A 1 HETATM 29 C C10 FAD . . . G 6 0.612 21.818 -2.071 0.5 12.05 ? C10 FAD 1066 A 1 HETATM 30 C C1' FAD . . . G 6 1.483 23.525 -0.348 0.5 17.12 ? C1' FAD 1066 A 1 HETATM 31 C C2' FAD . . . G 6 2.26 24.327 -1.339 0.5 22.45 ? C2' FAD 1066 A 1 HETATM 32 O O2' FAD . . . G 6 3.512 23.814 -1.051 0.5 16.25 ? O2' FAD 1066 A 1 HETATM 33 C C3' FAD . . . G 6 2.144 25.816 -1.055 0.5 28.78 ? C3' FAD 1066 A 1 HETATM 34 O O3' FAD . . . G 6 2.007 25.756 0.34 0.5 34.77 ? O3' FAD 1066 A 1 HETATM 35 C C4' FAD . . . G 6 0.905 26.619 -1.532 0.5 33.12 ? C4' FAD 1066 A 1 HETATM 36 O O4' FAD . . . G 6 0.063 25.907 -2.435 0.5 36.35 ? O4' FAD 1066 A 1 HETATM 37 C C5' FAD . . . G 6 1.208 27.989 -2.171 0.5 36.44 ? C5' FAD 1066 A 1 HETATM 38 O O5' FAD . . . G 6 2.583 28.342 -2.097 0.5 38.42 ? O5' FAD 1066 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #