data_2CJC # _model_server_result.job_id Vt1wE51p5glqGGJ1QCV32g _model_server_result.datetime_utc '2024-12-26 19:04:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2cjc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1066}' # _entry.id 2CJC # _exptl.entry_id 2CJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2CJC _cell.length_a 142.04 _cell.length_b 142.04 _cell.length_c 142.04 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CJC _symmetry.cell_setting ? _symmetry.Int_Tables_number 210 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'F 41 3 2' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 4 'crystal symmetry operation' 80_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 5 'crystal symmetry operation' 59_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 6 'crystal symmetry operation' 82_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 7 'crystal symmetry operation' 52_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 8 'crystal symmetry operation' 75_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 9 'crystal symmetry operation' 54_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 10 'crystal symmetry operation' 36_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 11 'crystal symmetry operation' 31_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 12 'crystal symmetry operation' 26_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 14 A GLU 14 1_555 B MG MG . A MG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc2 A OD2 ASP 41 A ASP 41 80_555 C MG MG . A MG 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc3 B MG MG . A MG 101 1_555 H O HOH . A HOH 2018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc4 B MG MG . A MG 101 1_555 H O HOH . A HOH 2023 24_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc5 B MG MG . A MG 101 1_555 H O HOH . A HOH 2024 24_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc6 B MG MG . A MG 101 1_555 H O HOH . A HOH 2029 24_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc7 B MG MG . A MG 101 1_555 H O HOH . A HOH 2054 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc8 C MG MG . A MG 102 1_555 H O HOH . A HOH 2046 80_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc9 C MG MG . A MG 102 1_555 H O HOH . A HOH 2069 75_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? metalc ? metalc10 D NA NA . A NA 103 1_555 E CL CL . A CL 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc11 D NA NA . A NA 103 1_555 E CL CL . A CL 105 59_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc12 D NA NA . A NA 103 1_555 E CL CL . A CL 105 80_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? metalc ? metalc13 D NA NA . A NA 103 1_555 H O HOH . A HOH 2063 80_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc14 D NA NA . A NA 103 1_555 H O HOH . A HOH 2063 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc15 D NA NA . A NA 103 1_555 H O HOH . A HOH 2063 59_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 70 n n PA O2A FAD sing 71 n n PA O5B FAD sing 72 n n PA O3P FAD sing 73 n n O2A HOA2 FAD sing 74 n n O5B C5B FAD sing 75 n n C5B C4B FAD sing 76 n n C5B H51A FAD sing 77 n n C5B H52A FAD sing 78 n n C4B O4B FAD sing 79 n n C4B C3B FAD sing 80 n n C4B H4B FAD sing 81 n n O4B C1B FAD sing 82 n n C3B O3B FAD sing 83 n n C3B C2B FAD sing 84 n n C3B H3B FAD sing 85 n n O3B HO3A FAD sing 86 n n C2B O2B FAD sing 87 n n C2B C1B FAD sing 88 n n C2B H2B FAD sing 89 n n O2B HO2A FAD sing 90 n n C1B N9A FAD sing 91 n n C1B H1B FAD sing 92 n n N9A C8A FAD sing 93 n y N9A C4A FAD sing 94 n y C8A N7A FAD doub 95 n y C8A H8A FAD sing 96 n n N7A C5A FAD sing 97 n y C5A C6A FAD sing 98 n y C5A C4A FAD doub 99 n y C6A N6A FAD sing 100 n n C6A N1A FAD doub 101 n y N6A H61A FAD sing 102 n n N6A H62A FAD sing 103 n n N1A C2A FAD sing 104 n y C2A N3A FAD doub 105 n y C2A H2A FAD sing 106 n n N3A C4A FAD sing 107 n y N1 C2 FAD sing 108 n n N1 C10 FAD doub 109 n n C2 O2 FAD doub 110 n n C2 N3 FAD sing 111 n n N3 C4 FAD sing 112 n n N3 HN3 FAD sing 113 n n C4 O4 FAD doub 114 n n C4 C4X FAD sing 115 n n C4X N5 FAD doub 116 n n C4X C10 FAD sing 117 n n N5 C5X FAD sing 118 n n C5X C6 FAD doub 119 n y C5X C9A FAD sing 120 n y C6 C7 FAD sing 121 n y C6 H6 FAD sing 122 n n C7 C7M FAD sing 123 n n C7 C8 FAD doub 124 n y C7M HM71 FAD sing 125 n n C7M HM72 FAD sing 126 n n C7M HM73 FAD sing 127 n n C8 C8M FAD sing 128 n n C8 C9 FAD sing 129 n y C8M HM81 FAD sing 130 n n C8M HM82 FAD sing 131 n n C8M HM83 FAD sing 132 n n C9 C9A FAD doub 133 n y C9 H9 FAD sing 134 n n C9A N10 FAD sing 135 n n N10 C10 FAD sing 136 n n N10 C1' FAD sing 137 n n C1' C2' FAD sing 138 n n C1' "H1'1" FAD sing 139 n n C1' "H1'2" FAD sing 140 n n C2' O2' FAD sing 141 n n C2' C3' FAD sing 142 n n C2' H2' FAD sing 143 n n O2' HO2' FAD sing 144 n n C3' O3' FAD sing 145 n n C3' C4' FAD sing 146 n n C3' H3' FAD sing 147 n n O3' HO3' FAD sing 148 n n C4' O4' FAD sing 149 n n C4' C5' FAD sing 150 n n C4' H4' FAD sing 151 n n O4' HO4' FAD sing 152 n n C5' O5' FAD sing 153 n n C5' "H5'1" FAD sing 154 n n C5' "H5'2" FAD sing 155 n n O5' P FAD sing 156 n n P O1P FAD doub 157 n n P O2P FAD sing 158 n n P O3P FAD sing 159 n n O2P HOP2 FAD sing 160 n n # _atom_sites.entry_id 2CJC _atom_sites.fract_transf_matrix[1][1] 0.00704 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00704 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00704 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 101 101 MG MG . C 2 MG A 1 102 102 MG MG . D 3 NA A 1 103 103 NA NA . E 4 CL A 1 105 105 CL CL . F 5 SO4 A 1 300 300 SO4 SO4 . G 6 FAD A 1 1066 1066 FAD FAD . H 7 HOH A 1 2001 2001 HOH HOH . H 7 HOH A 2 2002 2002 HOH HOH . H 7 HOH A 3 2003 2003 HOH HOH . H 7 HOH A 4 2004 2004 HOH HOH . H 7 HOH A 5 2005 2005 HOH HOH . H 7 HOH A 6 2006 2006 HOH HOH . H 7 HOH A 7 2007 2007 HOH HOH . H 7 HOH A 8 2008 2008 HOH HOH . H 7 HOH A 9 2009 2009 HOH HOH . H 7 HOH A 10 2010 2010 HOH HOH . H 7 HOH A 11 2011 2011 HOH HOH . H 7 HOH A 12 2012 2012 HOH HOH . H 7 HOH A 13 2013 2013 HOH HOH . H 7 HOH A 14 2014 2014 HOH HOH . H 7 HOH A 15 2015 2015 HOH HOH . H 7 HOH A 16 2016 2016 HOH HOH . H 7 HOH A 17 2017 2017 HOH HOH . H 7 HOH A 18 2018 2018 HOH HOH . H 7 HOH A 19 2019 2019 HOH HOH . H 7 HOH A 20 2020 2020 HOH HOH . H 7 HOH A 21 2021 2021 HOH HOH . H 7 HOH A 22 2022 2022 HOH HOH . H 7 HOH A 23 2023 2023 HOH HOH . H 7 HOH A 24 2024 2024 HOH HOH . H 7 HOH A 25 2025 2025 HOH HOH . H 7 HOH A 26 2026 2026 HOH HOH . H 7 HOH A 27 2027 2027 HOH HOH . H 7 HOH A 28 2028 2028 HOH HOH . H 7 HOH A 29 2029 2029 HOH HOH . H 7 HOH A 30 2030 2030 HOH HOH . H 7 HOH A 31 2031 2031 HOH HOH . H 7 HOH A 32 2032 2032 HOH HOH . H 7 HOH A 33 2033 2033 HOH HOH . H 7 HOH A 34 2034 2034 HOH HOH . H 7 HOH A 35 2035 2035 HOH HOH . H 7 HOH A 36 2036 2036 HOH HOH . H 7 HOH A 37 2037 2037 HOH HOH . H 7 HOH A 38 2038 2038 HOH HOH . H 7 HOH A 39 2039 2039 HOH HOH . H 7 HOH A 40 2040 2040 HOH HOH . H 7 HOH A 41 2041 2041 HOH HOH . H 7 HOH A 42 2042 2042 HOH HOH . H 7 HOH A 43 2043 2043 HOH HOH . H 7 HOH A 44 2044 2044 HOH HOH . H 7 HOH A 45 2045 2045 HOH HOH . H 7 HOH A 46 2046 2046 HOH HOH . H 7 HOH A 47 2047 2047 HOH HOH . H 7 HOH A 48 2048 2048 HOH HOH . H 7 HOH A 49 2049 2049 HOH HOH . H 7 HOH A 50 2050 2050 HOH HOH . H 7 HOH A 51 2051 2051 HOH HOH . H 7 HOH A 52 2052 2052 HOH HOH . H 7 HOH A 53 2053 2053 HOH HOH . H 7 HOH A 54 2054 2054 HOH HOH . H 7 HOH A 55 2055 2055 HOH HOH . H 7 HOH A 56 2056 2056 HOH HOH . H 7 HOH A 57 2057 2057 HOH HOH . H 7 HOH A 58 2058 2058 HOH HOH . H 7 HOH A 59 2059 2059 HOH HOH . H 7 HOH A 60 2060 2060 HOH HOH . H 7 HOH A 61 2061 2061 HOH HOH . H 7 HOH A 62 2062 2062 HOH HOH . H 7 HOH A 63 2063 2063 HOH HOH . H 7 HOH A 64 2064 2064 HOH HOH . H 7 HOH A 65 2065 2065 HOH HOH . H 7 HOH A 66 2066 2066 HOH HOH . H 7 HOH A 67 2067 2067 HOH HOH . H 7 HOH A 68 2068 2068 HOH HOH . H 7 HOH A 69 2069 2069 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1B FAD . . . G 6 0.293 23.429 3.979 0.5 56.47 ? C1B FAD 1066 A 1 HETATM 2 N N9A FAD . . . G 6 0.099 21.936 3.681 0.5 56.92 ? N9A FAD 1066 A 1 HETATM 3 C C8A FAD . . . G 6 0.496 20.783 4.313 0.5 57.02 ? C8A FAD 1066 A 1 HETATM 4 N N7A FAD . . . G 6 0.126 19.619 3.662 0.5 56.42 ? N7A FAD 1066 A 1 HETATM 5 C C5A FAD . . . G 6 -0.552 20.116 2.563 0.5 56.29 ? C5A FAD 1066 A 1 HETATM 6 C C6A FAD . . . G 6 -1.185 19.493 1.506 0.5 55.61 ? C6A FAD 1066 A 1 HETATM 7 N N6A FAD . . . G 6 -1.204 18.145 1.451 0.5 55.66 ? N6A FAD 1066 A 1 HETATM 8 N N1A FAD . . . G 6 -1.783 20.23 0.545 0.5 56.77 ? N1A FAD 1066 A 1 HETATM 9 C C2A FAD . . . G 6 -1.763 21.575 0.615 0.5 58.09 ? C2A FAD 1066 A 1 HETATM 10 N N3A FAD . . . G 6 -1.152 22.203 1.642 0.5 57.86 ? N3A FAD 1066 A 1 HETATM 11 C C4A FAD . . . G 6 -0.542 21.464 2.608 0.5 56.97 ? C4A FAD 1066 A 1 HETATM 12 N N1 FAD . . . G 6 0.082 22.399 -2.862 0.5 31.58 ? N1 FAD 1066 A 1 HETATM 13 C C2 FAD . . . G 6 -0.609 22.085 -3.97 0.5 31.73 ? C2 FAD 1066 A 1 HETATM 14 O O2 FAD . . . G 6 -1.082 23.062 -4.603 0.5 31.68 ? O2 FAD 1066 A 1 HETATM 15 N N3 FAD . . . G 6 -0.748 20.775 -4.366 0.5 31.21 ? N3 FAD 1066 A 1 HETATM 16 C C4 FAD . . . G 6 -0.269 19.728 -3.664 0.5 30.48 ? C4 FAD 1066 A 1 HETATM 17 O O4 FAD . . . G 6 -0.429 18.564 -4.047 0.5 30.58 ? O4 FAD 1066 A 1 HETATM 18 C C4X FAD . . . G 6 0.496 20.008 -2.428 0.5 30.54 ? C4X FAD 1066 A 1 HETATM 19 N N5 FAD . . . G 6 1.058 19.06 -1.636 0.5 29.3 ? N5 FAD 1066 A 1 HETATM 20 C C5X FAD . . . G 6 1.751 19.414 -0.518 0.5 30.54 ? C5X FAD 1066 A 1 HETATM 21 C C6 FAD . . . G 6 2.329 18.437 0.296 0.5 31.74 ? C6 FAD 1066 A 1 HETATM 22 C C7 FAD . . . G 6 3.047 18.768 1.448 0.5 30.83 ? C7 FAD 1066 A 1 HETATM 23 C C7M FAD . . . G 6 3.636 17.626 2.246 0.5 30.3 ? C7M FAD 1066 A 1 HETATM 24 C C8 FAD . . . G 6 3.193 20.2 1.831 0.5 30.82 ? C8 FAD 1066 A 1 HETATM 25 C C8M FAD . . . G 6 3.944 20.624 3.057 0.5 30.62 ? C8M FAD 1066 A 1 HETATM 26 C C9 FAD . . . G 6 2.614 21.193 1.034 0.5 30.93 ? C9 FAD 1066 A 1 HETATM 27 C C9A FAD . . . G 6 1.907 20.836 -0.126 0.5 30.75 ? C9A FAD 1066 A 1 HETATM 28 N N10 FAD . . . G 6 1.342 21.826 -0.944 0.5 30.95 ? N10 FAD 1066 A 1 HETATM 29 C C10 FAD . . . G 6 0.633 21.44 -2.082 0.5 30.12 ? C10 FAD 1066 A 1 HETATM 30 C C1' FAD . . . G 6 1.432 23.268 -0.582 0.5 33.23 ? C1' FAD 1066 A 1 HETATM 31 C C2' FAD . . . G 6 2.416 24.112 -1.376 0.5 38.93 ? C2' FAD 1066 A 1 HETATM 32 O O2' FAD . . . G 6 3.669 23.851 -0.794 0.5 37.14 ? O2' FAD 1066 A 1 HETATM 33 C C3' FAD . . . G 6 2.162 25.612 -1.217 0.5 43.95 ? C3' FAD 1066 A 1 HETATM 34 O O3' FAD . . . G 6 2.019 25.897 0.171 0.5 48.15 ? O3' FAD 1066 A 1 HETATM 35 C C4' FAD . . . G 6 0.972 26.216 -1.975 0.5 46.66 ? C4' FAD 1066 A 1 HETATM 36 O O4' FAD . . . G 6 0.856 25.681 -3.297 0.5 49.08 ? O4' FAD 1066 A 1 HETATM 37 C C5' FAD . . . G 6 1.166 27.733 -2.084 0.5 48.51 ? C5' FAD 1066 A 1 HETATM 38 O O5' FAD . . . G 6 2.518 28.058 -2.436 0.5 50.22 ? O5' FAD 1066 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #