data_2CKJ # _model_server_result.job_id nkVmuhlXbhZN7lpveiYYLA _model_server_result.datetime_utc '2025-07-30 15:18:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ckj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":3008}' # _entry.id 2CKJ # _exptl.entry_id 2CKJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.052 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2CKJ _cell.length_a 197.734 _cell.length_b 197.734 _cell.length_c 285.538 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CKJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 PQS dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H 1 1,2 B,I,J,K,L 2 1,3 C,D,M,N,O,P,Q,R,S,T,U,V 3 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 285.538 3 'crystal symmetry operation' 5_675 x-y+1,-y+2,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 342.485334 190.358667 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id U _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 509 A CYS 509 1_555 A SG CYS 1318 A CYS 1318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? disulf ? disulf2 B SG CYS 509 B CYS 509 1_555 B SG CYS 1318 B CYS 1318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? disulf ? disulf3 B SG CYS 536 B CYS 536 1_555 B SG CYS 993 B CYS 993 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf4 C SG CYS 509 C CYS 509 1_555 C SG CYS 1318 C CYS 1318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? disulf ? disulf5 C SG CYS 536 C CYS 536 1_555 C SG CYS 993 C CYS 993 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? disulf ? disulf6 D SG CYS 509 D CYS 509 1_555 D SG CYS 1318 D CYS 1318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? disulf ? disulf7 D SG CYS 536 D CYS 536 1_555 D SG CYS 993 D CYS 993 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc1 A SG CYS 43 A CYS 43 1_555 F FE1 FES . A FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc2 A SG CYS 48 A CYS 48 1_555 F FE1 FES . A FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc3 A SG CYS 51 A CYS 51 1_555 F FE2 FES . A FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc4 A SG CYS 73 A CYS 73 1_555 F FE2 FES . A FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc5 A SG CYS 113 A CYS 113 1_555 E FE2 FES . A FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc6 A SG CYS 116 A CYS 116 1_555 E FE1 FES . A FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc7 A SG CYS 148 A CYS 148 1_555 E FE1 FES . A FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc8 A SG CYS 150 A CYS 150 1_555 E FE2 FES . A FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc9 B SG CYS 43 B CYS 43 1_555 J FE1 FES . B FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc10 B SG CYS 48 B CYS 48 1_555 J FE1 FES . B FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc11 B SG CYS 51 B CYS 51 1_555 J FE2 FES . B FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc12 B SG CYS 73 B CYS 73 1_555 J FE2 FES . B FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc13 B SG CYS 113 B CYS 113 1_555 I FE2 FES . B FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc14 B SG CYS 116 B CYS 116 1_555 I FE1 FES . B FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc15 B SG CYS 148 B CYS 148 1_555 I FE1 FES . B FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc16 B SG CYS 150 B CYS 150 1_555 I FE2 FES . B FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc17 C SG CYS 43 C CYS 43 1_555 N FE1 FES . C FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc18 C SG CYS 48 C CYS 48 1_555 N FE1 FES . C FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc19 C SG CYS 51 C CYS 51 1_555 N FE2 FES . C FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc20 C SG CYS 73 C CYS 73 1_555 N FE2 FES . C FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc21 C SG CYS 113 C CYS 113 1_555 M FE2 FES . C FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc22 C SG CYS 116 C CYS 116 1_555 M FE1 FES . C FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc23 C SG CYS 148 C CYS 148 1_555 M FE1 FES . C FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc24 C SG CYS 150 C CYS 150 1_555 M FE2 FES . C FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc25 D SG CYS 43 D CYS 43 1_555 R FE1 FES . D FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc26 D SG CYS 48 D CYS 48 1_555 R FE1 FES . D FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc27 D SG CYS 51 D CYS 51 1_555 R FE2 FES . D FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc28 D SG CYS 73 D CYS 73 1_555 R FE2 FES . D FES 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc29 D SG CYS 113 D CYS 113 1_555 Q FE2 FES . D FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc30 D SG CYS 116 D CYS 116 1_555 Q FE1 FES . D FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc31 D SG CYS 148 D CYS 148 1_555 Q FE1 FES . D FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc32 D SG CYS 150 D CYS 150 1_555 Q FE2 FES . D FES 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.827 ? # _chem_comp.formula 'C2 H4 O2' _chem_comp.formula_weight 60.052 _chem_comp.id ACY _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACY doub 1 n n C OXT ACY sing 2 n n C CH3 ACY sing 3 n n OXT HXT ACY sing 4 n n CH3 H1 ACY sing 5 n n CH3 H2 ACY sing 6 n n CH3 H3 ACY sing 7 n n # _atom_sites.entry_id 2CKJ _atom_sites.fract_transf_matrix[1][1] 0.005057 _atom_sites.fract_transf_matrix[1][2] 0.00292 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00584 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003502 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FES A 1 3001 3001 FES FES . F 2 FES A 1 3002 3002 FES FES . G 3 FAD A 1 3006 3006 FAD FAD . H 4 GOL A 1 3007 3007 GOL GOL . I 2 FES B 1 3001 3001 FES FES . J 2 FES B 1 3002 3002 FES FES . K 3 FAD B 1 3006 3006 FAD FAD . L 4 GOL B 1 3007 3007 GOL GOL . M 2 FES C 1 3001 3001 FES FES . N 2 FES C 1 3002 3002 FES FES . O 3 FAD C 1 3006 3006 FAD FAD . P 4 GOL C 1 3007 3007 GOL GOL . Q 2 FES D 1 3001 3001 FES FES . R 2 FES D 1 3002 3002 FES FES . S 3 FAD D 1 3006 3006 FAD FAD . T 4 GOL D 1 3007 3007 GOL GOL . U 5 ACY D 1 3008 3008 ACY ACY . V 6 PO4 D 1 3009 3009 PO4 PO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACY . . . U 5 -36.405 14.476 120.932 1 55.25 ? C ACY 3008 D 1 HETATM 2 O O ACY . . . U 5 -35.33 13.884 121.268 1 54.7 ? O ACY 3008 D 1 HETATM 3 O OXT ACY . . . U 5 -36.886 14.419 119.73 1 54.52 ? OXT ACY 3008 D 1 HETATM 4 C CH3 ACY . . . U 5 -37.087 15.285 122.068 1 54.67 ? CH3 ACY 3008 D 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 55 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 4 #