data_2CKP # _model_server_result.job_id xNN182t4tCb-8zQmp1iwoA _model_server_result.datetime_utc '2024-11-23 22:26:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ckp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1458}' # _entry.id 2CKP # _exptl.entry_id 2CKP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2CKP _cell.length_a 52.271 _cell.length_b 127.137 _cell.length_c 158.742 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CKP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 2CKP _atom_sites.fract_transf_matrix[1][1] 0.019131 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007866 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0063 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 1458 1458 ADP ADP . D 3 HOH A 1 2001 2001 HOH HOH . D 3 HOH A 2 2002 2002 HOH HOH . D 3 HOH A 3 2003 2003 HOH HOH . D 3 HOH A 4 2004 2004 HOH HOH . D 3 HOH A 5 2005 2005 HOH HOH . D 3 HOH A 6 2006 2006 HOH HOH . D 3 HOH A 7 2007 2007 HOH HOH . D 3 HOH A 8 2008 2008 HOH HOH . D 3 HOH A 9 2009 2009 HOH HOH . D 3 HOH A 10 2010 2010 HOH HOH . D 3 HOH A 11 2011 2011 HOH HOH . D 3 HOH A 12 2012 2012 HOH HOH . D 3 HOH A 13 2013 2013 HOH HOH . D 3 HOH A 14 2014 2014 HOH HOH . D 3 HOH A 15 2015 2015 HOH HOH . E 3 HOH B 1 2001 2001 HOH HOH . E 3 HOH B 2 2002 2002 HOH HOH . E 3 HOH B 3 2003 2003 HOH HOH . E 3 HOH B 4 2004 2004 HOH HOH . E 3 HOH B 5 2005 2005 HOH HOH . E 3 HOH B 6 2006 2006 HOH HOH . E 3 HOH B 7 2007 2007 HOH HOH . E 3 HOH B 8 2008 2008 HOH HOH . E 3 HOH B 9 2009 2009 HOH HOH . E 3 HOH B 10 2010 2010 HOH HOH . E 3 HOH B 11 2011 2011 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 2 -21.566 22.308 -16.998 1 66.74 ? PB ADP 1458 A 1 HETATM 2 O O1B ADP . . . C 2 -22.91 22.978 -16.811 1 67.15 ? O1B ADP 1458 A 1 HETATM 3 O O2B ADP . . . C 2 -20.572 23.183 -17.739 1 66.69 ? O2B ADP 1458 A 1 HETATM 4 O O3B ADP . . . C 2 -21.696 20.89 -17.51 1 67.4 ? O3B ADP 1458 A 1 HETATM 5 P PA ADP . . . C 2 -19.455 21.718 -15.102 1 60.98 ? PA ADP 1458 A 1 HETATM 6 O O1A ADP . . . C 2 -18.851 22.938 -14.444 1 61.26 ? O1A ADP 1458 A 1 HETATM 7 O O2A ADP . . . C 2 -18.761 21.097 -16.286 1 60.97 ? O2A ADP 1458 A 1 HETATM 8 O O3A ADP . . . C 2 -20.978 22.104 -15.496 1 63.79 ? O3A ADP 1458 A 1 HETATM 9 O O5' ADP . . . C 2 -19.651 20.548 -14.004 1 61.22 ? O5' ADP 1458 A 1 HETATM 10 C C5' ADP . . . C 2 -19.125 20.585 -12.668 1 60.74 ? C5' ADP 1458 A 1 HETATM 11 C C4' ADP . . . C 2 -19.514 19.319 -11.896 1 60.23 ? C4' ADP 1458 A 1 HETATM 12 O O4' ADP . . . C 2 -19.347 18.165 -12.72 1 59.64 ? O4' ADP 1458 A 1 HETATM 13 C C3' ADP . . . C 2 -18.645 19.112 -10.661 1 60.69 ? C3' ADP 1458 A 1 HETATM 14 O O3' ADP . . . C 2 -19.428 19.046 -9.452 1 62.27 ? O3' ADP 1458 A 1 HETATM 15 C C2' ADP . . . C 2 -17.884 17.814 -10.882 1 59.94 ? C2' ADP 1458 A 1 HETATM 16 O O2' ADP . . . C 2 -18.132 16.855 -9.853 1 59.25 ? O2' ADP 1458 A 1 HETATM 17 C C1' ADP . . . C 2 -18.374 17.252 -12.199 1 59.75 ? C1' ADP 1458 A 1 HETATM 18 N N9 ADP . . . C 2 -17.218 17.05 -13.12 1 59.5 ? N9 ADP 1458 A 1 HETATM 19 C C8 ADP . . . C 2 -16.802 17.898 -14.075 1 59.94 ? C8 ADP 1458 A 1 HETATM 20 N N7 ADP . . . C 2 -15.714 17.406 -14.729 1 60.56 ? N7 ADP 1458 A 1 HETATM 21 C C5 ADP . . . C 2 -15.408 16.206 -14.193 1 59.82 ? C5 ADP 1458 A 1 HETATM 22 C C6 ADP . . . C 2 -14.379 15.142 -14.412 1 59.52 ? C6 ADP 1458 A 1 HETATM 23 N N6 ADP . . . C 2 -13.411 15.218 -15.36 1 59.42 ? N6 ADP 1458 A 1 HETATM 24 N N1 ADP . . . C 2 -14.433 14.058 -13.615 1 59.74 ? N1 ADP 1458 A 1 HETATM 25 C C2 ADP . . . C 2 -15.38 13.921 -12.664 1 60.25 ? C2 ADP 1458 A 1 HETATM 26 N N3 ADP . . . C 2 -16.337 14.84 -12.415 1 60.15 ? N3 ADP 1458 A 1 HETATM 27 C C4 ADP . . . C 2 -16.408 15.986 -13.132 1 59.46 ? C4 ADP 1458 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #