data_2CL8 # _model_server_result.job_id 6WnPCOn95nel-ldmnJ3N1A _model_server_result.datetime_utc '2024-12-22 06:12:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2cl8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1245}' # _entry.id 2CL8 # _exptl.entry_id 2CL8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2CL8 _cell.length_a 83.998 _cell.length_b 83.998 _cell.length_c 117.404 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CL8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 BGC BGC C1 O1 . O3 HO3 . sing 2 ? 2 3 2 BGC BGC C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C BGC 1 C 1 BGC A 1249 BGC 2 n C BGC 2 C 2 BGC A 1248 BGC 2 n C BGC 3 C 3 BGC A 1247 BGC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 119 1_555 A SG CYS 18 A CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf2 A SG CYS 35 A CYS 147 1_555 A SG CYS 128 A CYS 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 A SG CYS 107 A CYS 219 1_555 A SG CYS 120 A CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 B SG CYS 7 B CYS 119 1_555 B SG CYS 18 B CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf5 B SG CYS 35 B CYS 147 1_555 B SG CYS 128 B CYS 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf6 B SG CYS 107 B CYS 219 1_555 B SG CYS 120 B CYS 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? covale ? covale1 C O3 BGC . C BGC 1 1_555 C C1 BGC . C BGC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale2 C O3 BGC . C BGC 2 1_555 C C1 BGC . C BGC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? metalc ? metalc1 A O LYS 44 A LYS 156 1_555 D CA CA . A CA 1245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc2 A OD2 ASP 46 A ASP 158 1_555 D CA CA . A CA 1245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc3 A OE2 GLU 50 A GLU 162 1_555 D CA CA . A CA 1245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc4 A OE1 GLU 50 A GLU 162 1_555 D CA CA . A CA 1245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc5 A OE2 GLU 129 A GLU 241 1_555 D CA CA . A CA 1245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? metalc ? metalc6 A OE1 GLU 129 A GLU 241 1_555 D CA CA . A CA 1245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? metalc ? metalc7 D CA CA . A CA 1245 1_555 J O HOH . A HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc8 D CA CA . A CA 1245 1_555 J O HOH . A HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc9 B O LYS 44 B LYS 156 1_555 F CA CA . B CA 1245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc10 B OD2 ASP 46 B ASP 158 1_555 F CA CA . B CA 1245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc11 B OE2 GLU 50 B GLU 162 1_555 F CA CA . B CA 1245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? metalc ? metalc12 B OE1 GLU 50 B GLU 162 1_555 F CA CA . B CA 1245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc13 B OE2 GLU 129 B GLU 241 1_555 F CA CA . B CA 1245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc14 B OE1 GLU 129 B GLU 241 1_555 F CA CA . B CA 1245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc15 F CA CA . B CA 1245 1_555 K O HOH . B HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2CL8 _atom_sites.fract_transf_matrix[1][1] 0.011905 _atom_sites.fract_transf_matrix[1][2] 0.006873 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013747 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008518 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 CA A 1 1245 1245 CA CA . E 4 CL A 1 1246 1246 CL CL . F 3 CA B 1 1245 1245 CA CA . G 4 CL B 1 1246 1246 CL CL . H 4 CL B 1 1247 1247 CL CL . I 4 CL B 1 1248 1248 CL CL . J 5 HOH A 1 2001 2001 HOH HOH . J 5 HOH A 2 2002 2002 HOH HOH . J 5 HOH A 3 2003 2003 HOH HOH . J 5 HOH A 4 2004 2004 HOH HOH . J 5 HOH A 5 2005 2005 HOH HOH . J 5 HOH A 6 2006 2006 HOH HOH . K 5 HOH B 1 2001 2001 HOH HOH . K 5 HOH B 2 2002 2002 HOH HOH . K 5 HOH B 3 2003 2003 HOH HOH . K 5 HOH B 4 2004 2004 HOH HOH . K 5 HOH B 5 2005 2005 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -38.404 _atom_site.Cartn_y -12.029 _atom_site.Cartn_z -4.955 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1245 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 347 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #