data_2CLP
#
_model_server_result.job_id            Vdxs4s8v7NBV3Y_I3tQ9Mg 
_model_server_result.datetime_utc      '2025-03-04 14:23:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2clp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":1361}' 
#
_entry.id    2CLP 
#
_exptl.entry_id    2CLP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2CLP 
_cell.length_a            126.963 
_cell.length_b            126.963 
_cell.length_c            490.497 
_cell.Z_PDB               66 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2CLP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS dimeric 2 author_and_software_defined_assembly 1 
PQS dimeric 2 author_and_software_defined_assembly 2 
PQS dimeric 2 author_and_software_defined_assembly 3 
PQS dimeric 2 author_and_software_defined_assembly 4 
PQS dimeric 2 author_and_software_defined_assembly 5 
PQS dimeric 2 author_and_software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,L,M,N,AA,BA 1 1 
C,D,O,P,Q,CA 2 1 
E,F,R,S,T,DA,EA 3 1 
G,H,U,V,W,FA,GA 4 1 
I,J,X,Y 5 1 
K,Z,HA 6 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 163.499 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 L N N 
? 2 N N N 
? 2 O N N 
? 2 Q N N 
? 2 R N N 
? 2 T N N 
? 2 U N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 256 A HIS 269 1_555 M CA CA . A CA 1362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.318 ? 
metalc ? metalc2 G OE2 GLU 259 G GLU 272 1_555 V CA CA . G CA 1362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 237 n n 
PA O2A NDP sing 238 n n 
PA O5B NDP sing 239 n n 
PA O3 NDP sing 240 n n 
O2A HOA2 NDP sing 241 n n 
O5B C5B NDP sing 242 n n 
C5B C4B NDP sing 243 n n 
C5B H51A NDP sing 244 n n 
C5B H52A NDP sing 245 n n 
C4B O4B NDP sing 246 n n 
C4B C3B NDP sing 247 n n 
C4B H4B NDP sing 248 n n 
O4B C1B NDP sing 249 n n 
C3B O3B NDP sing 250 n n 
C3B C2B NDP sing 251 n n 
C3B H3B NDP sing 252 n n 
O3B HO3A NDP sing 253 n n 
C2B O2B NDP sing 254 n n 
C2B C1B NDP sing 255 n n 
C2B H2B NDP sing 256 n n 
O2B P2B NDP sing 257 n n 
C1B N9A NDP sing 258 n n 
C1B H1B NDP sing 259 n n 
N9A C8A NDP sing 260 n y 
N9A C4A NDP sing 261 n y 
C8A N7A NDP doub 262 n y 
C8A H8A NDP sing 263 n n 
N7A C5A NDP sing 264 n y 
C5A C6A NDP sing 265 n y 
C5A C4A NDP doub 266 n y 
C6A N6A NDP sing 267 n n 
C6A N1A NDP doub 268 n y 
N6A H61A NDP sing 269 n n 
N6A H62A NDP sing 270 n n 
N1A C2A NDP sing 271 n y 
C2A N3A NDP doub 272 n y 
C2A H2A NDP sing 273 n n 
N3A C4A NDP sing 274 n y 
O3 PN NDP sing 275 n n 
PN O1N NDP doub 276 n n 
PN O2N NDP sing 277 n n 
PN O5D NDP sing 278 n n 
O2N H21N NDP sing 279 n n 
O5D C5D NDP sing 280 n n 
C5D C4D NDP sing 281 n n 
C5D H51N NDP sing 282 n n 
C5D H52N NDP sing 283 n n 
C4D O4D NDP sing 284 n n 
C4D C3D NDP sing 285 n n 
C4D H4D NDP sing 286 n n 
O4D C1D NDP sing 287 n n 
C3D O3D NDP sing 288 n n 
C3D C2D NDP sing 289 n n 
C3D H3D NDP sing 290 n n 
O3D HO3N NDP sing 291 n n 
C2D O2D NDP sing 292 n n 
C2D C1D NDP sing 293 n n 
C2D H2D NDP sing 294 n n 
O2D HO2N NDP sing 295 n n 
C1D N1N NDP sing 296 n n 
C1D H1D NDP sing 297 n n 
N1N C2N NDP sing 298 n n 
N1N C6N NDP sing 299 n n 
C2N C3N NDP doub 300 n n 
C2N H2N NDP sing 301 n n 
C3N C7N NDP sing 302 n n 
C3N C4N NDP sing 303 n n 
C7N O7N NDP doub 304 n n 
C7N N7N NDP sing 305 n n 
N7N H71N NDP sing 306 n n 
N7N H72N NDP sing 307 n n 
C4N C5N NDP sing 308 n n 
C4N H41N NDP sing 309 n n 
C4N H42N NDP sing 310 n n 
C5N C6N NDP doub 311 n n 
C5N H5N NDP sing 312 n n 
C6N H6N NDP sing 313 n n 
P2B O1X NDP doub 314 n n 
P2B O2X NDP sing 315 n n 
P2B O3X NDP sing 316 n n 
O2X HOP2 NDP sing 317 n n 
O3X HOP3 NDP sing 318 n n 
#
_atom_sites.entry_id                     2CLP 
_atom_sites.fract_transf_matrix[1][1]    0.007876 
_atom_sites.fract_transf_matrix[1][2]    0.004547 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009095 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002039 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
L 2 NDP A 1 1361 1361 NDP NDP . 
M 3 CA A 1 1362 1362 CA CA . 
N 2 NDP B 1 1361 1361 NDP NDP . 
O 2 NDP C 1 1361 1361 NDP NDP . 
P 3 CA C 1 1362 1362 CA CA . 
Q 2 NDP D 1 1361 1361 NDP NDP . 
R 2 NDP E 1 1361 1361 NDP NDP . 
S 3 CA E 1 1362 1362 CA CA . 
T 2 NDP F 1 1361 1361 NDP NDP . 
U 2 NDP G 1 1361 1361 NDP NDP . 
V 3 CA G 1 1362 1362 CA CA . 
W 2 NDP H 1 1361 1361 NDP NDP . 
X 2 NDP I 1 1361 1361 NDP NDP . 
Y 2 NDP J 1 1361 1361 NDP NDP . 
Z 2 NDP K 1 1361 1361 NDP NDP . 
AA 4 HOH A 1 2001 2001 HOH HOH . 
AA 4 HOH A 2 2002 2002 HOH HOH . 
BA 4 HOH B 1 2001 2001 HOH HOH . 
BA 4 HOH B 2 2002 2002 HOH HOH . 
CA 4 HOH D 1 2001 2001 HOH HOH . 
DA 4 HOH E 1 2001 2001 HOH HOH . 
DA 4 HOH E 2 2002 2002 HOH HOH . 
EA 4 HOH F 1 2001 2001 HOH HOH . 
EA 4 HOH F 2 2002 2002 HOH HOH . 
FA 4 HOH G 1 2001 2001 HOH HOH . 
GA 4 HOH H 1 2001 2001 HOH HOH . 
HA 4 HOH K 1 2001 2001 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . Q 2 -101.177 14.65 28.104 1 40.64 ? PA NDP 1361 D 1 
HETATM 2 O O1A NDP . . . Q 2 -101.431 13.264 28.568 1 39.93 ? O1A NDP 1361 D 1 
HETATM 3 O O2A NDP . . . Q 2 -101.686 15.643 29.077 1 41.75 ? O2A NDP 1361 D 1 
HETATM 4 O O5B NDP . . . Q 2 -101.88 14.904 26.705 1 41.87 ? O5B NDP 1361 D 1 
HETATM 5 C C5B NDP . . . Q 2 -102.013 16.237 26.304 1 44.49 ? C5B NDP 1361 D 1 
HETATM 6 C C4B NDP . . . Q 2 -103.163 16.271 25.342 1 46.53 ? C4B NDP 1361 D 1 
HETATM 7 O O4B NDP . . . Q 2 -104.378 16.006 26.02 1 48.69 ? O4B NDP 1361 D 1 
HETATM 8 C C3B NDP . . . Q 2 -103.291 17.63 24.702 1 47.57 ? C3B NDP 1361 D 1 
HETATM 9 O O3B NDP . . . Q 2 -102.476 17.757 23.564 1 47.31 ? O3B NDP 1361 D 1 
HETATM 10 C C2B NDP . . . Q 2 -104.763 17.618 24.395 1 49.3 ? C2B NDP 1361 D 1 
HETATM 11 O O2B NDP . . . Q 2 -104.897 16.86 23.213 1 48.92 ? O2B NDP 1361 D 1 
HETATM 12 C C1B NDP . . . Q 2 -105.372 16.929 25.619 1 52.02 ? C1B NDP 1361 D 1 
HETATM 13 N N9A NDP . . . Q 2 -105.71 17.951 26.664 1 53.42 ? N9A NDP 1361 D 1 
HETATM 14 C C8A NDP . . . Q 2 -104.83 18.695 27.415 1 54.34 ? C8A NDP 1361 D 1 
HETATM 15 N N7A NDP . . . Q 2 -105.511 19.539 28.225 1 53.91 ? N7A NDP 1361 D 1 
HETATM 16 C C5A NDP . . . Q 2 -106.824 19.358 28.025 1 54.19 ? C5A NDP 1361 D 1 
HETATM 17 C C6A NDP . . . Q 2 -107.957 19.958 28.593 1 54.34 ? C6A NDP 1361 D 1 
HETATM 18 N N6A NDP . . . Q 2 -107.863 20.905 29.526 1 54.55 ? N6A NDP 1361 D 1 
HETATM 19 N N1A NDP . . . Q 2 -109.216 19.569 28.181 1 54.47 ? N1A NDP 1361 D 1 
HETATM 20 C C2A NDP . . . Q 2 -109.333 18.589 27.205 1 54.72 ? C2A NDP 1361 D 1 
HETATM 21 N N3A NDP . . . Q 2 -108.203 18.002 26.65 1 55.04 ? N3A NDP 1361 D 1 
HETATM 22 C C4A NDP . . . Q 2 -106.962 18.371 27.05 1 54.08 ? C4A NDP 1361 D 1 
HETATM 23 O O3 NDP . . . Q 2 -99.615 14.998 27.87 1 38.34 ? O3 NDP 1361 D 1 
HETATM 24 P PN NDP . . . Q 2 -98.716 14.867 26.533 1 36.16 ? PN NDP 1361 D 1 
HETATM 25 O O1N NDP . . . Q 2 -98.722 16.084 25.69 1 34.85 ? O1N NDP 1361 D 1 
HETATM 26 O O2N NDP . . . Q 2 -98.813 13.519 25.948 1 36.37 ? O2N NDP 1361 D 1 
HETATM 27 O O5D NDP . . . Q 2 -97.306 14.886 27.267 1 35.35 ? O5D NDP 1361 D 1 
HETATM 28 C C5D NDP . . . Q 2 -96.923 16.091 27.873 1 34.17 ? C5D NDP 1361 D 1 
HETATM 29 C C4D NDP . . . Q 2 -95.58 16.542 27.331 1 32.82 ? C4D NDP 1361 D 1 
HETATM 30 O O4D NDP . . . Q 2 -94.636 15.507 27.484 1 31.55 ? O4D NDP 1361 D 1 
HETATM 31 C C3D NDP . . . Q 2 -95.568 16.887 25.858 1 31.86 ? C3D NDP 1361 D 1 
HETATM 32 O O3D NDP . . . Q 2 -96.178 18.123 25.567 1 32.59 ? O3D NDP 1361 D 1 
HETATM 33 C C2D NDP . . . Q 2 -94.079 16.792 25.602 1 30.93 ? C2D NDP 1361 D 1 
HETATM 34 O O2D NDP . . . Q 2 -93.447 18.005 25.932 1 28.15 ? O2D NDP 1361 D 1 
HETATM 35 C C1D NDP . . . Q 2 -93.637 15.655 26.517 1 31.38 ? C1D NDP 1361 D 1 
HETATM 36 N N1N NDP . . . Q 2 -93.54 14.353 25.839 1 32.38 ? N1N NDP 1361 D 1 
HETATM 37 C C2N NDP . . . Q 2 -92.364 13.669 25.915 1 33.62 ? C2N NDP 1361 D 1 
HETATM 38 C C3N NDP . . . Q 2 -92.319 12.291 25.757 1 34.59 ? C3N NDP 1361 D 1 
HETATM 39 C C7N NDP . . . Q 2 -91.003 11.579 25.748 1 34.81 ? C7N NDP 1361 D 1 
HETATM 40 O O7N NDP . . . Q 2 -90.873 10.408 24.974 1 34.48 ? O7N NDP 1361 D 1 
HETATM 41 N N7N NDP . . . Q 2 -90.009 12.057 26.503 1 35.17 ? N7N NDP 1361 D 1 
HETATM 42 C C4N NDP . . . Q 2 -93.463 11.561 25.115 1 34.43 ? C4N NDP 1361 D 1 
HETATM 43 C C5N NDP . . . Q 2 -94.7 12.399 25.072 1 33.48 ? C5N NDP 1361 D 1 
HETATM 44 C C6N NDP . . . Q 2 -94.678 13.736 25.407 1 32.93 ? C6N NDP 1361 D 1 
HETATM 45 P P2B NDP . . . Q 2 -106.051 17.009 22.107 1 47.03 ? P2B NDP 1361 D 1 
HETATM 46 O O1X NDP . . . Q 2 -106.544 18.421 22.108 1 46.32 ? O1X NDP 1361 D 1 
HETATM 47 O O2X NDP . . . Q 2 -105.456 16.752 20.752 1 47.36 ? O2X NDP 1361 D 1 
HETATM 48 O O3X NDP . . . Q 2 -107.125 15.99 22.434 1 46.66 ? O3X NDP 1361 D 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    49 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           48 
#