data_2CLP # _model_server_result.job_id 20TRW6-bWWplp9gwkj_oag _model_server_result.datetime_utc '2025-03-04 14:03:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2clp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":1361}' # _entry.id 2CLP # _exptl.entry_id 2CLP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2CLP _cell.length_a 126.963 _cell.length_b 126.963 _cell.length_c 490.497 _cell.Z_PDB 66 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CLP _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 PQS dimeric 2 author_and_software_defined_assembly 3 PQS dimeric 2 author_and_software_defined_assembly 4 PQS dimeric 2 author_and_software_defined_assembly 5 PQS dimeric 2 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,L,M,N,AA,BA 1 1 C,D,O,P,Q,CA 2 1 E,F,R,S,T,DA,EA 3 1 G,H,U,V,W,FA,GA 4 1 I,J,X,Y 5 1 K,Z,HA 6 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 163.499 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 L N N ? 2 N N N ? 2 O N N ? 2 Q N N ? 2 R N N ? 2 T N N ? 2 U N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 256 A HIS 269 1_555 M CA CA . A CA 1362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.318 ? metalc ? metalc2 G OE2 GLU 259 G GLU 272 1_555 V CA CA . G CA 1362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 2CLP _atom_sites.fract_transf_matrix[1][1] 0.007876 _atom_sites.fract_transf_matrix[1][2] 0.004547 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009095 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002039 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 2 NDP A 1 1361 1361 NDP NDP . M 3 CA A 1 1362 1362 CA CA . N 2 NDP B 1 1361 1361 NDP NDP . O 2 NDP C 1 1361 1361 NDP NDP . P 3 CA C 1 1362 1362 CA CA . Q 2 NDP D 1 1361 1361 NDP NDP . R 2 NDP E 1 1361 1361 NDP NDP . S 3 CA E 1 1362 1362 CA CA . T 2 NDP F 1 1361 1361 NDP NDP . U 2 NDP G 1 1361 1361 NDP NDP . V 3 CA G 1 1362 1362 CA CA . W 2 NDP H 1 1361 1361 NDP NDP . X 2 NDP I 1 1361 1361 NDP NDP . Y 2 NDP J 1 1361 1361 NDP NDP . Z 2 NDP K 1 1361 1361 NDP NDP . AA 4 HOH A 1 2001 2001 HOH HOH . AA 4 HOH A 2 2002 2002 HOH HOH . BA 4 HOH B 1 2001 2001 HOH HOH . BA 4 HOH B 2 2002 2002 HOH HOH . CA 4 HOH D 1 2001 2001 HOH HOH . DA 4 HOH E 1 2001 2001 HOH HOH . DA 4 HOH E 2 2002 2002 HOH HOH . EA 4 HOH F 1 2001 2001 HOH HOH . EA 4 HOH F 2 2002 2002 HOH HOH . FA 4 HOH G 1 2001 2001 HOH HOH . GA 4 HOH H 1 2001 2001 HOH HOH . HA 4 HOH K 1 2001 2001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . R 2 -49.349 39.965 14.036 1 37.02 ? PA NDP 1361 E 1 HETATM 2 O O1A NDP . . . R 2 -48.058 40.63 13.816 1 37.54 ? O1A NDP 1361 E 1 HETATM 3 O O2A NDP . . . R 2 -50.252 40.3 12.906 1 37.48 ? O2A NDP 1361 E 1 HETATM 4 O O5B NDP . . . R 2 -49.987 40.442 15.429 1 39.51 ? O5B NDP 1361 E 1 HETATM 5 C C5B NDP . . . R 2 -51.393 40.355 15.624 1 43.04 ? C5B NDP 1361 E 1 HETATM 6 C C4B NDP . . . R 2 -51.902 41.629 16.281 1 45.24 ? C4B NDP 1361 E 1 HETATM 7 O O4B NDP . . . R 2 -51.929 42.698 15.347 1 47.48 ? O4B NDP 1361 E 1 HETATM 8 C C3B NDP . . . R 2 -53.312 41.559 16.838 1 45.97 ? C3B NDP 1361 E 1 HETATM 9 O O3B NDP . . . R 2 -53.399 40.959 18.112 1 44.9 ? O3B NDP 1361 E 1 HETATM 10 C C2B NDP . . . R 2 -53.665 43.034 16.853 1 47.74 ? C2B NDP 1361 E 1 HETATM 11 O O2B NDP . . . R 2 -53.037 43.722 17.902 1 48.7 ? O2B NDP 1361 E 1 HETATM 12 C C1B NDP . . . R 2 -53.013 43.575 15.605 1 49.27 ? C1B NDP 1361 E 1 HETATM 13 N N9A NDP . . . R 2 -53.93 43.602 14.45 1 50.12 ? N9A NDP 1361 E 1 HETATM 14 C C8A NDP . . . R 2 -54.286 42.531 13.679 1 50.44 ? C8A NDP 1361 E 1 HETATM 15 N N7A NDP . . . R 2 -55.12 42.974 12.715 1 50.66 ? N7A NDP 1361 E 1 HETATM 16 C C5A NDP . . . R 2 -55.299 44.304 12.847 1 50.41 ? C5A NDP 1361 E 1 HETATM 17 C C6A NDP . . . R 2 -56.048 45.235 12.126 1 50.42 ? C6A NDP 1361 E 1 HETATM 18 N N6A NDP . . . R 2 -56.779 44.863 11.07 1 50.23 ? N6A NDP 1361 E 1 HETATM 19 N N1A NDP . . . R 2 -56.025 46.564 12.52 1 50.79 ? N1A NDP 1361 E 1 HETATM 20 C C2A NDP . . . R 2 -55.268 46.957 13.611 1 50.83 ? C2A NDP 1361 E 1 HETATM 21 N N3A NDP . . . R 2 -54.533 46.019 14.32 1 50.9 ? N3A NDP 1361 E 1 HETATM 22 C C4A NDP . . . R 2 -54.549 44.714 13.942 1 50.5 ? C4A NDP 1361 E 1 HETATM 23 O O3 NDP . . . R 2 -49.197 38.366 14.161 1 35.34 ? O3 NDP 1361 E 1 HETATM 24 P PN NDP . . . R 2 -48.913 37.578 15.533 1 34.49 ? PN NDP 1361 E 1 HETATM 25 O O1N NDP . . . R 2 -50.125 37.223 16.299 1 33.77 ? O1N NDP 1361 E 1 HETATM 26 O O2N NDP . . . R 2 -47.77 38.2 16.196 1 34.8 ? O2N NDP 1361 E 1 HETATM 27 O O5D NDP . . . R 2 -48.409 36.215 14.908 1 35.45 ? O5D NDP 1361 E 1 HETATM 28 C C5D NDP . . . R 2 -49.33 35.456 14.178 1 36.79 ? C5D NDP 1361 E 1 HETATM 29 C C4D NDP . . . R 2 -49.397 34.077 14.797 1 37.31 ? C4D NDP 1361 E 1 HETATM 30 O O4D NDP . . . R 2 -48.122 33.469 14.76 1 37.58 ? O4D NDP 1361 E 1 HETATM 31 C C3D NDP . . . R 2 -49.792 34.083 16.255 1 38.25 ? C3D NDP 1361 E 1 HETATM 32 O O3D NDP . . . R 2 -51.178 34.206 16.436 1 38.54 ? O3D NDP 1361 E 1 HETATM 33 C C2D NDP . . . R 2 -49.204 32.759 16.705 1 39.04 ? C2D NDP 1361 E 1 HETATM 34 O O2D NDP . . . R 2 -50.097 31.701 16.425 1 39.32 ? O2D NDP 1361 E 1 HETATM 35 C C1D NDP . . . R 2 -47.93 32.615 15.877 1 39.1 ? C1D NDP 1361 E 1 HETATM 36 N N1N NDP . . . R 2 -46.698 32.967 16.638 1 40 ? N1N NDP 1361 E 1 HETATM 37 C C2N NDP . . . R 2 -45.708 32.038 16.813 1 40.46 ? C2N NDP 1361 E 1 HETATM 38 C C3N NDP . . . R 2 -44.484 32.392 17.371 1 41.21 ? C3N NDP 1361 E 1 HETATM 39 C C7N NDP . . . R 2 -43.458 31.347 17.653 1 41.95 ? C7N NDP 1361 E 1 HETATM 40 O O7N NDP . . . R 2 -42.134 31.731 17.946 1 41.48 ? O7N NDP 1361 E 1 HETATM 41 N N7N NDP . . . R 2 -43.809 30.068 17.62 1 43.67 ? N7N NDP 1361 E 1 HETATM 42 C C4N NDP . . . R 2 -44.328 33.652 18.165 1 41.24 ? C4N NDP 1361 E 1 HETATM 43 C C5N NDP . . . R 2 -45.461 34.596 17.916 1 41.53 ? C5N NDP 1361 E 1 HETATM 44 C C6N NDP . . . R 2 -46.583 34.213 17.19 1 41.17 ? C6N NDP 1361 E 1 HETATM 45 P P2B NDP . . . R 2 -53.784 44.232 19.224 1 49.72 ? P2B NDP 1361 E 1 HETATM 46 O O1X NDP . . . R 2 -55.265 44.149 19.025 1 50.45 ? O1X NDP 1361 E 1 HETATM 47 O O2X NDP . . . R 2 -53.435 43.312 20.382 1 49.18 ? O2X NDP 1361 E 1 HETATM 48 O O3X NDP . . . R 2 -53.403 45.691 19.422 1 49.33 ? O3X NDP 1361 E 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #