data_2CLP
#
_model_server_result.job_id            pOpuSYDrypu9qS_D74eEBw 
_model_server_result.datetime_utc      '2025-09-05 14:35:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2clp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"T","auth_seq_id":1361}' 
#
_entry.id    2CLP 
#
_exptl.entry_id    2CLP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2CLP 
_cell.length_a            126.963 
_cell.length_b            126.963 
_cell.length_c            490.497 
_cell.Z_PDB               66 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2CLP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS dimeric 2 author_and_software_defined_assembly 1 
PQS dimeric 2 author_and_software_defined_assembly 2 
PQS dimeric 2 author_and_software_defined_assembly 3 
PQS dimeric 2 author_and_software_defined_assembly 4 
PQS dimeric 2 author_and_software_defined_assembly 5 
PQS dimeric 2 author_and_software_defined_assembly 6 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,L,M,N,AA,BA 1 1 
C,D,O,P,Q,CA 2 1 
E,F,R,S,T,DA,EA 3 1 
G,H,U,V,W,FA,GA 4 1 
I,J,X,Y 5 1 
K,Z,HA 6 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 163.499 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 L N N 
? 2 N N N 
? 2 O N N 
? 2 Q N N 
? 2 R N N 
? 2 T N N 
? 2 U N N 
? 2 W N N 
? 2 X N N 
? 2 Y N N 
? 2 Z N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 256 A HIS 269 1_555 M CA CA . A CA 1362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.318 ? 
metalc ? metalc2 G OE2 GLU 259 G GLU 272 1_555 V CA CA . G CA 1362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 237 n n 
PA O2A NDP sing 238 n n 
PA O5B NDP sing 239 n n 
PA O3 NDP sing 240 n n 
O2A HOA2 NDP sing 241 n n 
O5B C5B NDP sing 242 n n 
C5B C4B NDP sing 243 n n 
C5B H51A NDP sing 244 n n 
C5B H52A NDP sing 245 n n 
C4B O4B NDP sing 246 n n 
C4B C3B NDP sing 247 n n 
C4B H4B NDP sing 248 n n 
O4B C1B NDP sing 249 n n 
C3B O3B NDP sing 250 n n 
C3B C2B NDP sing 251 n n 
C3B H3B NDP sing 252 n n 
O3B HO3A NDP sing 253 n n 
C2B O2B NDP sing 254 n n 
C2B C1B NDP sing 255 n n 
C2B H2B NDP sing 256 n n 
O2B P2B NDP sing 257 n n 
C1B N9A NDP sing 258 n n 
C1B H1B NDP sing 259 n n 
N9A C8A NDP sing 260 n y 
N9A C4A NDP sing 261 n y 
C8A N7A NDP doub 262 n y 
C8A H8A NDP sing 263 n n 
N7A C5A NDP sing 264 n y 
C5A C6A NDP sing 265 n y 
C5A C4A NDP doub 266 n y 
C6A N6A NDP sing 267 n n 
C6A N1A NDP doub 268 n y 
N6A H61A NDP sing 269 n n 
N6A H62A NDP sing 270 n n 
N1A C2A NDP sing 271 n y 
C2A N3A NDP doub 272 n y 
C2A H2A NDP sing 273 n n 
N3A C4A NDP sing 274 n y 
O3 PN NDP sing 275 n n 
PN O1N NDP doub 276 n n 
PN O2N NDP sing 277 n n 
PN O5D NDP sing 278 n n 
O2N H21N NDP sing 279 n n 
O5D C5D NDP sing 280 n n 
C5D C4D NDP sing 281 n n 
C5D H51N NDP sing 282 n n 
C5D H52N NDP sing 283 n n 
C4D O4D NDP sing 284 n n 
C4D C3D NDP sing 285 n n 
C4D H4D NDP sing 286 n n 
O4D C1D NDP sing 287 n n 
C3D O3D NDP sing 288 n n 
C3D C2D NDP sing 289 n n 
C3D H3D NDP sing 290 n n 
O3D HO3N NDP sing 291 n n 
C2D O2D NDP sing 292 n n 
C2D C1D NDP sing 293 n n 
C2D H2D NDP sing 294 n n 
O2D HO2N NDP sing 295 n n 
C1D N1N NDP sing 296 n n 
C1D H1D NDP sing 297 n n 
N1N C2N NDP sing 298 n n 
N1N C6N NDP sing 299 n n 
C2N C3N NDP doub 300 n n 
C2N H2N NDP sing 301 n n 
C3N C7N NDP sing 302 n n 
C3N C4N NDP sing 303 n n 
C7N O7N NDP doub 304 n n 
C7N N7N NDP sing 305 n n 
N7N H71N NDP sing 306 n n 
N7N H72N NDP sing 307 n n 
C4N C5N NDP sing 308 n n 
C4N H41N NDP sing 309 n n 
C4N H42N NDP sing 310 n n 
C5N C6N NDP doub 311 n n 
C5N H5N NDP sing 312 n n 
C6N H6N NDP sing 313 n n 
P2B O1X NDP doub 314 n n 
P2B O2X NDP sing 315 n n 
P2B O3X NDP sing 316 n n 
O2X HOP2 NDP sing 317 n n 
O3X HOP3 NDP sing 318 n n 
#
_atom_sites.entry_id                     2CLP 
_atom_sites.fract_transf_matrix[1][1]    0.007876 
_atom_sites.fract_transf_matrix[1][2]    0.004547 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009095 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002039 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
L 2 NDP A 1 1361 1361 NDP NDP . 
M 3 CA A 1 1362 1362 CA CA . 
N 2 NDP B 1 1361 1361 NDP NDP . 
O 2 NDP C 1 1361 1361 NDP NDP . 
P 3 CA C 1 1362 1362 CA CA . 
Q 2 NDP D 1 1361 1361 NDP NDP . 
R 2 NDP E 1 1361 1361 NDP NDP . 
S 3 CA E 1 1362 1362 CA CA . 
T 2 NDP F 1 1361 1361 NDP NDP . 
U 2 NDP G 1 1361 1361 NDP NDP . 
V 3 CA G 1 1362 1362 CA CA . 
W 2 NDP H 1 1361 1361 NDP NDP . 
X 2 NDP I 1 1361 1361 NDP NDP . 
Y 2 NDP J 1 1361 1361 NDP NDP . 
Z 2 NDP K 1 1361 1361 NDP NDP . 
AA 4 HOH A 1 2001 2001 HOH HOH . 
AA 4 HOH A 2 2002 2002 HOH HOH . 
BA 4 HOH B 1 2001 2001 HOH HOH . 
BA 4 HOH B 2 2002 2002 HOH HOH . 
CA 4 HOH D 1 2001 2001 HOH HOH . 
DA 4 HOH E 1 2001 2001 HOH HOH . 
DA 4 HOH E 2 2002 2002 HOH HOH . 
EA 4 HOH F 1 2001 2001 HOH HOH . 
EA 4 HOH F 2 2002 2002 HOH HOH . 
FA 4 HOH G 1 2001 2001 HOH HOH . 
GA 4 HOH H 1 2001 2001 HOH HOH . 
HA 4 HOH K 1 2001 2001 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . T 2 -6.148 44.235 5.844 1 35.55 ? PA NDP 1361 F 1 
HETATM 2 O O1A NDP . . . T 2 -7.599 44.562 5.999 1 34.1 ? O1A NDP 1361 F 1 
HETATM 3 O O2A NDP . . . T 2 -5.364 44.636 7.048 1 35.01 ? O2A NDP 1361 F 1 
HETATM 4 O O5B NDP . . . T 2 -5.562 44.932 4.516 1 36.4 ? O5B NDP 1361 F 1 
HETATM 5 C C5B NDP . . . T 2 -4.171 44.962 4.277 1 38.65 ? C5B NDP 1361 F 1 
HETATM 6 C C4B NDP . . . T 2 -3.918 46.173 3.415 1 40.1 ? C4B NDP 1361 F 1 
HETATM 7 O O4B NDP . . . T 2 -4.228 47.323 4.184 1 42.34 ? O4B NDP 1361 F 1 
HETATM 8 C C3B NDP . . . T 2 -2.491 46.313 2.911 1 40.14 ? C3B NDP 1361 F 1 
HETATM 9 O O3B NDP . . . T 2 -2.263 45.681 1.657 1 37.05 ? O3B NDP 1361 F 1 
HETATM 10 C C2B NDP . . . T 2 -2.387 47.827 2.868 1 41.77 ? C2B NDP 1361 F 1 
HETATM 11 O O2B NDP . . . T 2 -3.036 48.364 1.754 1 42.9 ? O2B NDP 1361 F 1 
HETATM 12 C C1B NDP . . . T 2 -3.23 48.312 4.028 1 43.47 ? C1B NDP 1361 F 1 
HETATM 13 N N9A NDP . . . T 2 -2.403 48.485 5.241 1 44.67 ? N9A NDP 1361 F 1 
HETATM 14 C C8A NDP . . . T 2 -1.952 47.502 6.094 1 44.81 ? C8A NDP 1361 F 1 
HETATM 15 N N7A NDP . . . T 2 -1.228 48.096 7.078 1 44.82 ? N7A NDP 1361 F 1 
HETATM 16 C C5A NDP . . . T 2 -1.213 49.43 6.871 1 44.63 ? C5A NDP 1361 F 1 
HETATM 17 C C6A NDP . . . T 2 -0.628 50.476 7.569 1 44.39 ? C6A NDP 1361 F 1 
HETATM 18 N N6A NDP . . . T 2 0.08 50.24 8.668 1 44.32 ? N6A NDP 1361 F 1 
HETATM 19 N N1A NDP . . . T 2 -0.798 51.77 7.104 1 44.93 ? N1A NDP 1361 F 1 
HETATM 20 C C2A NDP . . . T 2 -1.541 52.019 5.952 1 44.68 ? C2A NDP 1361 F 1 
HETATM 21 N N3A NDP . . . T 2 -2.12 50.973 5.261 1 44.42 ? N3A NDP 1361 F 1 
HETATM 22 C C4A NDP . . . T 2 -1.955 49.698 5.718 1 44.94 ? C4A NDP 1361 F 1 
HETATM 23 O O3 NDP . . . T 2 -5.885 42.657 5.605 1 32.16 ? O3 NDP 1361 F 1 
HETATM 24 P PN NDP . . . T 2 -6.085 41.906 4.202 1 30.22 ? PN NDP 1361 F 1 
HETATM 25 O O1N NDP . . . T 2 -4.783 41.824 3.495 1 28.35 ? O1N NDP 1361 F 1 
HETATM 26 O O2N NDP . . . T 2 -7.313 42.374 3.536 1 29.04 ? O2N NDP 1361 F 1 
HETATM 27 O O5D NDP . . . T 2 -6.416 40.456 4.756 1 29.23 ? O5D NDP 1361 F 1 
HETATM 28 C C5D NDP . . . T 2 -5.386 39.857 5.486 1 29.4 ? C5D NDP 1361 F 1 
HETATM 29 C C4D NDP . . . T 2 -5.039 38.498 4.891 1 29.29 ? C4D NDP 1361 F 1 
HETATM 30 O O4D NDP . . . T 2 -6.226 37.733 4.91 1 28.57 ? O4D NDP 1361 F 1 
HETATM 31 C C3D NDP . . . T 2 -4.488 38.408 3.463 1 28.42 ? C3D NDP 1361 F 1 
HETATM 32 O O3D NDP . . . T 2 -3.109 38.688 3.303 1 27.01 ? O3D NDP 1361 F 1 
HETATM 33 C C2D NDP . . . T 2 -4.822 36.955 3.202 1 28.45 ? C2D NDP 1361 F 1 
HETATM 34 O O2D NDP . . . T 2 -3.79 36.126 3.702 1 27.97 ? O2D NDP 1361 F 1 
HETATM 35 C C1D NDP . . . T 2 -6.112 36.698 3.986 1 28.58 ? C1D NDP 1361 F 1 
HETATM 36 N N1N NDP . . . T 2 -7.329 36.818 3.198 1 28.98 ? N1N NDP 1361 F 1 
HETATM 37 C C2N NDP . . . T 2 -8.181 35.758 3.11 1 29.42 ? C2N NDP 1361 F 1 
HETATM 38 C C3N NDP . . . T 2 -9.387 35.914 2.444 1 29.71 ? C3N NDP 1361 F 1 
HETATM 39 C C7N NDP . . . T 2 -10.287 34.755 2.245 1 28.98 ? C7N NDP 1361 F 1 
HETATM 40 O O7N NDP . . . T 2 -10.982 34.695 1.031 1 27.45 ? O7N NDP 1361 F 1 
HETATM 41 N N7N NDP . . . T 2 -10.428 33.87 3.226 1 28.55 ? N7N NDP 1361 F 1 
HETATM 42 C C4N NDP . . . T 2 -9.618 37.044 1.485 1 30.23 ? C4N NDP 1361 F 1 
HETATM 43 C C5N NDP . . . T 2 -8.611 38.129 1.665 1 30.67 ? C5N NDP 1361 F 1 
HETATM 44 C C6N NDP . . . T 2 -7.515 37.973 2.496 1 29.67 ? C6N NDP 1361 F 1 
HETATM 45 P P2B NDP . . . T 2 -2.311 48.992 0.479 1 43.97 ? P2B NDP 1361 F 1 
HETATM 46 O O1X NDP . . . T 2 -1.148 49.855 0.893 1 43.58 ? O1X NDP 1361 F 1 
HETATM 47 O O2X NDP . . . T 2 -1.872 47.885 -0.468 1 44.1 ? O2X NDP 1361 F 1 
HETATM 48 O O3X NDP . . . T 2 -3.362 49.874 -0.138 1 45.2 ? O3X NDP 1361 F 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    33 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           48 
#