data_2CLP # _model_server_result.job_id XahPawa2-EkH6NV1bmzcYQ _model_server_result.datetime_utc '2025-03-04 14:20:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2clp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":1361}' # _entry.id 2CLP # _exptl.entry_id 2CLP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2CLP _cell.length_a 126.963 _cell.length_b 126.963 _cell.length_c 490.497 _cell.Z_PDB 66 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CLP _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PQS dimeric 2 author_and_software_defined_assembly 2 PQS dimeric 2 author_and_software_defined_assembly 3 PQS dimeric 2 author_and_software_defined_assembly 4 PQS dimeric 2 author_and_software_defined_assembly 5 PQS dimeric 2 author_and_software_defined_assembly 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,L,M,N,AA,BA 1 1 C,D,O,P,Q,CA 2 1 E,F,R,S,T,DA,EA 3 1 G,H,U,V,W,FA,GA 4 1 I,J,X,Y 5 1 K,Z,HA 6 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 163.499 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 L N N ? 2 N N N ? 2 O N N ? 2 Q N N ? 2 R N N ? 2 T N N ? 2 U N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 256 A HIS 269 1_555 M CA CA . A CA 1362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.318 ? metalc ? metalc2 G OE2 GLU 259 G GLU 272 1_555 V CA CA . G CA 1362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 2CLP _atom_sites.fract_transf_matrix[1][1] 0.007876 _atom_sites.fract_transf_matrix[1][2] 0.004547 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009095 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002039 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 2 NDP A 1 1361 1361 NDP NDP . M 3 CA A 1 1362 1362 CA CA . N 2 NDP B 1 1361 1361 NDP NDP . O 2 NDP C 1 1361 1361 NDP NDP . P 3 CA C 1 1362 1362 CA CA . Q 2 NDP D 1 1361 1361 NDP NDP . R 2 NDP E 1 1361 1361 NDP NDP . S 3 CA E 1 1362 1362 CA CA . T 2 NDP F 1 1361 1361 NDP NDP . U 2 NDP G 1 1361 1361 NDP NDP . V 3 CA G 1 1362 1362 CA CA . W 2 NDP H 1 1361 1361 NDP NDP . X 2 NDP I 1 1361 1361 NDP NDP . Y 2 NDP J 1 1361 1361 NDP NDP . Z 2 NDP K 1 1361 1361 NDP NDP . AA 4 HOH A 1 2001 2001 HOH HOH . AA 4 HOH A 2 2002 2002 HOH HOH . BA 4 HOH B 1 2001 2001 HOH HOH . BA 4 HOH B 2 2002 2002 HOH HOH . CA 4 HOH D 1 2001 2001 HOH HOH . DA 4 HOH E 1 2001 2001 HOH HOH . DA 4 HOH E 2 2002 2002 HOH HOH . EA 4 HOH F 1 2001 2001 HOH HOH . EA 4 HOH F 2 2002 2002 HOH HOH . FA 4 HOH G 1 2001 2001 HOH HOH . GA 4 HOH H 1 2001 2001 HOH HOH . HA 4 HOH K 1 2001 2001 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . Z 2 -78.698 22.235 85.888 1 37.54 ? PA NDP 1361 K 1 HETATM 2 O O1A NDP . . . Z 2 -78.12 20.861 85.705 1 35.64 ? O1A NDP 1361 K 1 HETATM 3 O O2A NDP . . . Z 2 -78.52 23.139 84.715 1 35.42 ? O2A NDP 1361 K 1 HETATM 4 O O5B NDP . . . Z 2 -77.989 22.888 87.179 1 38.7 ? O5B NDP 1361 K 1 HETATM 5 C C5B NDP . . . Z 2 -78.063 24.272 87.386 1 40.84 ? C5B NDP 1361 K 1 HETATM 6 C C4B NDP . . . Z 2 -76.967 24.669 88.344 1 42.87 ? C4B NDP 1361 K 1 HETATM 7 O O4B NDP . . . Z 2 -75.701 24.545 87.707 1 43.66 ? O4B NDP 1361 K 1 HETATM 8 C C3B NDP . . . Z 2 -77.122 26.114 88.839 1 44.32 ? C3B NDP 1361 K 1 HETATM 9 O O3B NDP . . . Z 2 -77.812 26.248 90.072 1 45.28 ? O3B NDP 1361 K 1 HETATM 10 C C2B NDP . . . Z 2 -75.686 26.514 89.016 1 43.98 ? C2B NDP 1361 K 1 HETATM 11 O O2B NDP . . . Z 2 -75.5 26.044 90.314 1 43.12 ? O2B NDP 1361 K 1 HETATM 12 C C1B NDP . . . Z 2 -74.957 25.738 87.916 1 44.3 ? C1B NDP 1361 K 1 HETATM 13 N N9A NDP . . . Z 2 -74.935 26.537 86.664 1 44.12 ? N9A NDP 1361 K 1 HETATM 14 C C8A NDP . . . Z 2 -76.006 26.78 85.842 1 43.93 ? C8A NDP 1361 K 1 HETATM 15 N N7A NDP . . . Z 2 -75.608 27.548 84.817 1 43.69 ? N7A NDP 1361 K 1 HETATM 16 C C5A NDP . . . Z 2 -74.295 27.81 84.952 1 44.16 ? C5A NDP 1361 K 1 HETATM 17 C C6A NDP . . . Z 2 -73.404 28.547 84.174 1 44.4 ? C6A NDP 1361 K 1 HETATM 18 N N6A NDP . . . Z 2 -73.832 29.151 83.069 1 44.62 ? N6A NDP 1361 K 1 HETATM 19 N N1A NDP . . . Z 2 -72.08 28.658 84.555 1 44.32 ? N1A NDP 1361 K 1 HETATM 20 C C2A NDP . . . Z 2 -71.654 28.03 85.714 1 44.38 ? C2A NDP 1361 K 1 HETATM 21 N N3A NDP . . . Z 2 -72.542 27.296 86.484 1 44.84 ? N3A NDP 1361 K 1 HETATM 22 C C4A NDP . . . Z 2 -73.851 27.182 86.111 1 44.46 ? C4A NDP 1361 K 1 HETATM 23 O O3 NDP . . . Z 2 -80.29 22.203 86.216 1 34.11 ? O3 NDP 1361 K 1 HETATM 24 P PN NDP . . . Z 2 -80.98 22.05 87.67 1 31.19 ? PN NDP 1361 K 1 HETATM 25 O O1N NDP . . . Z 2 -81.228 23.342 88.347 1 30.19 ? O1N NDP 1361 K 1 HETATM 26 O O2N NDP . . . Z 2 -80.315 20.954 88.386 1 30.55 ? O2N NDP 1361 K 1 HETATM 27 O O5D NDP . . . Z 2 -82.4 21.578 87.144 1 31.28 ? O5D NDP 1361 K 1 HETATM 28 C C5D NDP . . . Z 2 -83.115 22.516 86.394 1 32.32 ? C5D NDP 1361 K 1 HETATM 29 C C4D NDP . . . Z 2 -84.535 22.64 86.912 1 33.19 ? C4D NDP 1361 K 1 HETATM 30 O O4D NDP . . . Z 2 -85.17 21.381 86.836 1 33.85 ? O4D NDP 1361 K 1 HETATM 31 C C3D NDP . . . Z 2 -84.697 23.093 88.346 1 33.2 ? C3D NDP 1361 K 1 HETATM 32 O O3D NDP . . . Z 2 -84.713 24.494 88.478 1 33.61 ? O3D NDP 1361 K 1 HETATM 33 C C2D NDP . . . Z 2 -86.054 22.499 88.63 1 33.66 ? C2D NDP 1361 K 1 HETATM 34 O O2D NDP . . . Z 2 -87.014 23.408 88.136 1 33.33 ? O2D NDP 1361 K 1 HETATM 35 C C1D NDP . . . Z 2 -86.12 21.205 87.842 1 33.52 ? C1D NDP 1361 K 1 HETATM 36 N N1N NDP . . . Z 2 -85.738 19.997 88.594 1 34.98 ? N1N NDP 1361 K 1 HETATM 37 C C2N NDP . . . Z 2 -86.671 19.011 88.754 1 36.93 ? C2N NDP 1361 K 1 HETATM 38 C C3N NDP . . . Z 2 -86.372 17.832 89.436 1 37.87 ? C3N NDP 1361 K 1 HETATM 39 C C7N NDP . . . Z 2 -87.461 16.832 89.665 1 38.45 ? C7N NDP 1361 K 1 HETATM 40 O O7N NDP . . . Z 2 -87.178 15.74 90.507 1 40.02 ? O7N NDP 1361 K 1 HETATM 41 N N7N NDP . . . Z 2 -88.65 16.975 89.072 1 39.66 ? N7N NDP 1361 K 1 HETATM 42 C C4N NDP . . . Z 2 -85.18 17.752 90.36 1 37.54 ? C4N NDP 1361 K 1 HETATM 43 C C5N NDP . . . Z 2 -84.231 18.885 90.123 1 36.94 ? C5N NDP 1361 K 1 HETATM 44 C C6N NDP . . . Z 2 -84.551 19.944 89.271 1 36.51 ? C6N NDP 1361 K 1 HETATM 45 P P2B NDP . . . Z 2 -74.296 26.374 91.274 1 43.79 ? P2B NDP 1361 K 1 HETATM 46 O O1X NDP . . . Z 2 -74.071 27.857 91.182 1 43.4 ? O1X NDP 1361 K 1 HETATM 47 O O2X NDP . . . Z 2 -74.706 26.081 92.696 1 44.59 ? O2X NDP 1361 K 1 HETATM 48 O O3X NDP . . . Z 2 -73.133 25.47 90.884 1 43.32 ? O3X NDP 1361 K 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #