data_2CM4
#
_model_server_result.job_id            '_pixAzff-awEHurgX2E3qQ' 
_model_server_result.datetime_utc      '2024-10-14 04:28:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2cm4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1170}' 
#
_entry.id    2CM4 
#
_exptl.entry_id    2CM4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              298.461 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'RICINOLEIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2CM4 
_cell.length_a            45.17 
_cell.length_b            55.52 
_cell.length_c            60.62 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2CM4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PQS 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 24 1_555 A SG CYS 128 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 38 A CYS 56 1_555 A SG CYS 150 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 A SG CYS 100 A CYS 118 1_555 A SG CYS 129 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
#
_chem_comp.formula           'C18 H34 O3' 
_chem_comp.formula_weight    298.461 
_chem_comp.id                RCL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'RICINOLEIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C1 RCL sing 262 n n 
O1 HO1 RCL sing 263 n n 
C1 O2 RCL doub 264 n n 
C1 C2 RCL sing 265 n n 
C2 C3 RCL sing 266 n n 
C2 H21 RCL sing 267 n n 
C2 H22 RCL sing 268 n n 
C3 C4 RCL sing 269 n n 
C3 H31 RCL sing 270 n n 
C3 H32 RCL sing 271 n n 
C4 C5 RCL sing 272 n n 
C4 H41 RCL sing 273 n n 
C4 H42 RCL sing 274 n n 
C5 C6 RCL sing 275 n n 
C5 H51 RCL sing 276 n n 
C5 H52 RCL sing 277 n n 
C6 C7 RCL sing 278 n n 
C6 H61 RCL sing 279 n n 
C6 H62 RCL sing 280 n n 
C7 C8 RCL sing 281 n n 
C7 H71 RCL sing 282 n n 
C7 H72 RCL sing 283 n n 
C8 C9 RCL sing 284 n n 
C8 H81 RCL sing 285 n n 
C8 H82 RCL sing 286 n n 
C9 C10 RCL doub 287 e n 
C9 H9 RCL sing 288 n n 
C10 C11 RCL sing 289 n n 
C10 H10 RCL sing 290 n n 
C11 C12 RCL sing 291 n n 
C11 H111 RCL sing 292 n n 
C11 H112 RCL sing 293 n n 
C12 O12 RCL sing 294 n n 
C12 C13 RCL sing 295 n n 
C12 H12 RCL sing 296 n n 
O12 HO12 RCL sing 297 n n 
C13 C14 RCL sing 298 n n 
C13 H131 RCL sing 299 n n 
C13 H132 RCL sing 300 n n 
C14 C15 RCL sing 301 n n 
C14 H141 RCL sing 302 n n 
C14 H142 RCL sing 303 n n 
C15 C16 RCL sing 304 n n 
C15 H151 RCL sing 305 n n 
C15 H152 RCL sing 306 n n 
C16 C17 RCL sing 307 n n 
C16 H161 RCL sing 308 n n 
C16 H162 RCL sing 309 n n 
C17 C18 RCL sing 310 n n 
C17 H171 RCL sing 311 n n 
C17 H172 RCL sing 312 n n 
C18 H181 RCL sing 313 n n 
C18 H182 RCL sing 314 n n 
C18 H183 RCL sing 315 n n 
#
_atom_sites.entry_id                     2CM4 
_atom_sites.fract_transf_matrix[1][1]    0.02214 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018011 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016497 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ACT A 1 1169 1169 ACT ACT . 
C 3 RCL A 1 1170 1170 RCL RCL . 
D 4 HOH A 1 2001 2001 HOH HOH . 
D 4 HOH A 2 2002 2002 HOH HOH . 
D 4 HOH A 3 2003 2003 HOH HOH . 
D 4 HOH A 4 2004 2004 HOH HOH . 
D 4 HOH A 5 2005 2005 HOH HOH . 
D 4 HOH A 6 2006 2006 HOH HOH . 
D 4 HOH A 7 2007 2007 HOH HOH . 
D 4 HOH A 8 2008 2008 HOH HOH . 
D 4 HOH A 9 2009 2009 HOH HOH . 
D 4 HOH A 10 2010 2010 HOH HOH . 
D 4 HOH A 11 2011 2011 HOH HOH . 
D 4 HOH A 12 2012 2012 HOH HOH . 
D 4 HOH A 13 2013 2013 HOH HOH . 
D 4 HOH A 14 2014 2014 HOH HOH . 
D 4 HOH A 15 2015 2015 HOH HOH . 
D 4 HOH A 16 2016 2016 HOH HOH . 
D 4 HOH A 17 2017 2017 HOH HOH . 
D 4 HOH A 18 2018 2018 HOH HOH . 
D 4 HOH A 19 2019 2019 HOH HOH . 
D 4 HOH A 20 2020 2020 HOH HOH . 
D 4 HOH A 21 2021 2021 HOH HOH . 
D 4 HOH A 22 2022 2022 HOH HOH . 
D 4 HOH A 23 2023 2023 HOH HOH . 
D 4 HOH A 24 2024 2024 HOH HOH . 
D 4 HOH A 25 2025 2025 HOH HOH . 
D 4 HOH A 26 2026 2026 HOH HOH . 
D 4 HOH A 27 2027 2027 HOH HOH . 
D 4 HOH A 28 2028 2028 HOH HOH . 
D 4 HOH A 29 2029 2029 HOH HOH . 
D 4 HOH A 30 2030 2030 HOH HOH . 
D 4 HOH A 31 2031 2031 HOH HOH . 
D 4 HOH A 32 2032 2032 HOH HOH . 
D 4 HOH A 33 2033 2033 HOH HOH . 
D 4 HOH A 34 2034 2034 HOH HOH . 
D 4 HOH A 35 2035 2035 HOH HOH . 
D 4 HOH A 36 2036 2036 HOH HOH . 
D 4 HOH A 37 2037 2037 HOH HOH . 
D 4 HOH A 38 2038 2038 HOH HOH . 
D 4 HOH A 39 2039 2039 HOH HOH . 
D 4 HOH A 40 2040 2040 HOH HOH . 
D 4 HOH A 41 2041 2041 HOH HOH . 
D 4 HOH A 42 2042 2042 HOH HOH . 
D 4 HOH A 43 2043 2043 HOH HOH . 
D 4 HOH A 44 2044 2044 HOH HOH . 
D 4 HOH A 45 2045 2045 HOH HOH . 
D 4 HOH A 46 2046 2046 HOH HOH . 
D 4 HOH A 47 2047 2047 HOH HOH . 
D 4 HOH A 48 2048 2048 HOH HOH . 
D 4 HOH A 49 2049 2049 HOH HOH . 
D 4 HOH A 50 2050 2050 HOH HOH . 
D 4 HOH A 51 2051 2051 HOH HOH . 
D 4 HOH A 52 2052 2052 HOH HOH . 
D 4 HOH A 53 2053 2053 HOH HOH . 
D 4 HOH A 54 2054 2054 HOH HOH . 
D 4 HOH A 55 2055 2055 HOH HOH . 
D 4 HOH A 56 2056 2056 HOH HOH . 
D 4 HOH A 57 2057 2057 HOH HOH . 
D 4 HOH A 58 2058 2058 HOH HOH . 
D 4 HOH A 59 2059 2059 HOH HOH . 
D 4 HOH A 60 2060 2060 HOH HOH . 
D 4 HOH A 61 2061 2061 HOH HOH . 
D 4 HOH A 62 2062 2062 HOH HOH . 
D 4 HOH A 63 2063 2063 HOH HOH . 
D 4 HOH A 64 2064 2064 HOH HOH . 
D 4 HOH A 65 2065 2065 HOH HOH . 
D 4 HOH A 66 2066 2066 HOH HOH . 
D 4 HOH A 67 2067 2067 HOH HOH . 
D 4 HOH A 68 2068 2068 HOH HOH . 
D 4 HOH A 69 2069 2069 HOH HOH . 
D 4 HOH A 70 2070 2070 HOH HOH . 
D 4 HOH A 71 2071 2071 HOH HOH . 
D 4 HOH A 72 2072 2072 HOH HOH . 
D 4 HOH A 73 2073 2073 HOH HOH . 
D 4 HOH A 74 2074 2074 HOH HOH . 
D 4 HOH A 75 2075 2075 HOH HOH . 
D 4 HOH A 76 2076 2076 HOH HOH . 
D 4 HOH A 77 2077 2077 HOH HOH . 
D 4 HOH A 78 2078 2078 HOH HOH . 
D 4 HOH A 79 2079 2079 HOH HOH . 
D 4 HOH A 80 2080 2080 HOH HOH . 
D 4 HOH A 81 2081 2081 HOH HOH . 
D 4 HOH A 82 2082 2082 HOH HOH . 
D 4 HOH A 83 2083 2083 HOH HOH . 
D 4 HOH A 84 2084 2084 HOH HOH . 
D 4 HOH A 85 2085 2085 HOH HOH . 
D 4 HOH A 86 2086 2086 HOH HOH . 
D 4 HOH A 87 2087 2087 HOH HOH . 
D 4 HOH A 88 2088 2088 HOH HOH . 
D 4 HOH A 89 2089 2089 HOH HOH . 
D 4 HOH A 90 2090 2090 HOH HOH . 
D 4 HOH A 91 2091 2091 HOH HOH . 
D 4 HOH A 92 2092 2092 HOH HOH . 
D 4 HOH A 93 2093 2093 HOH HOH . 
D 4 HOH A 94 2094 2094 HOH HOH . 
D 4 HOH A 95 2095 2095 HOH HOH . 
D 4 HOH A 96 2096 2096 HOH HOH . 
D 4 HOH A 97 2097 2097 HOH HOH . 
D 4 HOH A 98 2098 2098 HOH HOH . 
D 4 HOH A 99 2099 2099 HOH HOH . 
D 4 HOH A 100 2100 2100 HOH HOH . 
D 4 HOH A 101 2101 2101 HOH HOH . 
D 4 HOH A 102 2102 2102 HOH HOH . 
D 4 HOH A 103 2103 2103 HOH HOH . 
D 4 HOH A 104 2104 2104 HOH HOH . 
D 4 HOH A 105 2105 2105 HOH HOH . 
D 4 HOH A 106 2106 2106 HOH HOH . 
D 4 HOH A 107 2107 2107 HOH HOH . 
D 4 HOH A 108 2108 2108 HOH HOH . 
D 4 HOH A 109 2109 2109 HOH HOH . 
D 4 HOH A 110 2110 2110 HOH HOH . 
D 4 HOH A 111 2111 2111 HOH HOH . 
D 4 HOH A 112 2112 2112 HOH HOH . 
D 4 HOH A 113 2113 2113 HOH HOH . 
D 4 HOH A 114 2114 2114 HOH HOH . 
D 4 HOH A 115 2115 2115 HOH HOH . 
D 4 HOH A 116 2116 2116 HOH HOH . 
D 4 HOH A 117 2117 2117 HOH HOH . 
D 4 HOH A 118 2118 2118 HOH HOH . 
D 4 HOH A 119 2119 2119 HOH HOH . 
D 4 HOH A 120 2120 2120 HOH HOH . 
D 4 HOH A 121 2121 2121 HOH HOH . 
D 4 HOH A 122 2122 2122 HOH HOH . 
D 4 HOH A 123 2123 2123 HOH HOH . 
D 4 HOH A 124 2124 2124 HOH HOH . 
D 4 HOH A 125 2125 2125 HOH HOH . 
D 4 HOH A 126 2126 2126 HOH HOH . 
D 4 HOH A 127 2127 2127 HOH HOH . 
D 4 HOH A 128 2128 2128 HOH HOH . 
D 4 HOH A 129 2129 2129 HOH HOH . 
D 4 HOH A 130 2130 2130 HOH HOH . 
D 4 HOH A 131 2131 2131 HOH HOH . 
D 4 HOH A 132 2132 2132 HOH HOH . 
D 4 HOH A 133 2133 2133 HOH HOH . 
D 4 HOH A 134 2134 2134 HOH HOH . 
D 4 HOH A 135 2135 2135 HOH HOH . 
D 4 HOH A 136 2136 2136 HOH HOH . 
D 4 HOH A 137 2137 2137 HOH HOH . 
D 4 HOH A 138 2138 2138 HOH HOH . 
D 4 HOH A 139 2139 2139 HOH HOH . 
D 4 HOH A 140 2140 2140 HOH HOH . 
D 4 HOH A 141 2141 2141 HOH HOH . 
D 4 HOH A 142 2142 2142 HOH HOH . 
D 4 HOH A 143 2143 2143 HOH HOH . 
D 4 HOH A 144 2144 2144 HOH HOH . 
D 4 HOH A 145 2145 2145 HOH HOH . 
D 4 HOH A 146 2146 2146 HOH HOH . 
D 4 HOH A 147 2147 2147 HOH HOH . 
D 4 HOH A 148 2148 2148 HOH HOH . 
D 4 HOH A 149 2149 2149 HOH HOH . 
D 4 HOH A 150 2150 2150 HOH HOH . 
D 4 HOH A 151 2151 2151 HOH HOH . 
D 4 HOH A 152 2152 2152 HOH HOH . 
D 4 HOH A 153 2153 2153 HOH HOH . 
D 4 HOH A 154 2154 2154 HOH HOH . 
D 4 HOH A 155 2155 2155 HOH HOH . 
D 4 HOH A 156 2156 2156 HOH HOH . 
D 4 HOH A 157 2157 2157 HOH HOH . 
D 4 HOH A 158 2158 2158 HOH HOH . 
D 4 HOH A 159 2159 2159 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 RCL . . . C 3 30.119 28.62 11.562 1 31.53 ? O1 RCL 1170 A 1 
HETATM 2 C C1 RCL . . . C 3 28.945 28.451 12.008 1 28.98 ? C1 RCL 1170 A 1 
HETATM 3 O O2 RCL . . . C 3 28.299 27.357 11.762 1 27.27 ? O2 RCL 1170 A 1 
HETATM 4 C C2 RCL . . . C 3 28.313 29.585 12.852 1 25.37 ? C2 RCL 1170 A 1 
HETATM 5 C C3 RCL . . . C 3 28.238 29.171 14.329 1 22.8 ? C3 RCL 1170 A 1 
HETATM 6 C C4 RCL . . . C 3 29.637 29.107 14.968 1 19.72 ? C4 RCL 1170 A 1 
HETATM 7 C C5 RCL . . . C 3 29.472 28.6 16.425 1 19.99 ? C5 RCL 1170 A 1 
HETATM 8 C C6 RCL . . . C 3 29.48 29.814 17.389 1 20.49 ? C6 RCL 1170 A 1 
HETATM 9 C C7 RCL . . . C 3 29.21 29.368 18.859 1 20.98 ? C7 RCL 1170 A 1 
HETATM 10 C C8 RCL . . . C 3 29.004 30.655 19.719 1 19.47 ? C8 RCL 1170 A 1 
HETATM 11 C C9 RCL . . . C 3 29.038 30.347 21.212 1 18.19 ? C9 RCL 1170 A 1 
HETATM 12 C C10 RCL . . . C 3 28.716 31.421 22.161 1 17.39 ? C10 RCL 1170 A 1 
HETATM 13 C C11 RCL . . . C 3 28.364 32.86 21.593 1 18.01 ? C11 RCL 1170 A 1 
HETATM 14 C C12 RCL . . . C 3 27.416 33.655 22.552 1 17.3 ? C12 RCL 1170 A 1 
HETATM 15 O O12 RCL . . . C 3 28.115 33.903 23.817 1 13.43 ? O12 RCL 1170 A 1 
HETATM 16 C C13 RCL . . . C 3 26.305 32.737 23.103 1 18.91 ? C13 RCL 1170 A 1 
HETATM 17 C C14 RCL . . . C 3 25.102 32.699 22.156 1 22.75 ? C14 RCL 1170 A 1 
HETATM 18 C C15 RCL . . . C 3 23.9 32.139 22.978 1 23.46 ? C15 RCL 1170 A 1 
HETATM 19 C C16 RCL . . . C 3 22.915 31.514 22.014 1 23.33 ? C16 RCL 1170 A 1 
HETATM 20 C C17 RCL . . . C 3 21.689 31 22.806 1 21.48 ? C17 RCL 1170 A 1 
HETATM 21 C C18 RCL . . . C 3 22.142 29.965 23.835 1 19.58 ? C18 RCL 1170 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           21 
#