data_2CM6 # _model_server_result.job_id dwWlSd5iHa-3kQaSP7bkfg _model_server_result.datetime_utc '2025-03-05 01:28:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2cm6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1680}' # _entry.id 2CM6 # _exptl.entry_id 2CM6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.89 _cell.angle_gamma 90 _cell.entry_id 2CM6 _cell.length_a 40.069 _cell.length_b 59.606 _cell.length_c 66.385 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CM6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLU 12 A GLU 530 1_555 D CA CA . A CA 1680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc2 A O MET 52 A MET 570 1_555 D CA CA . A CA 1680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc3 A OD2 ASP 53 A ASP 571 1_555 C CA CA . A CA 1679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc4 A OD1 ASP 53 A ASP 571 1_555 C CA CA . A CA 1679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc5 A OD1 ASP 53 A ASP 571 1_555 D CA CA . A CA 1680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc6 A OD2 ASP 59 A ASP 577 1_555 C CA CA . A CA 1679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc7 A OD1 ASP 113 A ASP 631 1_555 C CA CA . A CA 1679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc8 A OD2 ASP 113 A ASP 631 1_555 C CA CA . A CA 1679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.27 ? metalc ? metalc9 A OD2 ASP 113 A ASP 631 1_555 D CA CA . A CA 1680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc10 A O TYR 114 A TYR 632 1_555 C CA CA . A CA 1679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc11 A OD1 ASP 115 A ASP 633 1_555 C CA CA . A CA 1679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc12 A OD1 ASP 115 A ASP 633 1_555 D CA CA . A CA 1680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc13 A OD2 ASP 115 A ASP 633 1_555 D CA CA . A CA 1680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc14 A OD2 ASP 121 A ASP 639 1_555 D CA CA . A CA 1680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc15 C CA CA . A CA 1679 1_555 H O HOH . A HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc16 B O GLU 12 B GLU 1530 1_555 F CA CA . B CA 2680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc17 B O MET 52 B MET 1570 1_555 F CA CA . B CA 2680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc18 B OD2 ASP 53 B ASP 1571 1_555 E CA CA . B CA 2679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? metalc ? metalc19 B OD1 ASP 53 B ASP 1571 1_555 E CA CA . B CA 2679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc20 B OD1 ASP 53 B ASP 1571 1_555 F CA CA . B CA 2680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc21 B OD2 ASP 59 B ASP 1577 1_555 E CA CA . B CA 2679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc22 B OD1 ASP 113 B ASP 1631 1_555 E CA CA . B CA 2679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc23 B OD2 ASP 113 B ASP 1631 1_555 E CA CA . B CA 2679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.313 ? metalc ? metalc24 B OD2 ASP 113 B ASP 1631 1_555 F CA CA . B CA 2680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc25 B O TYR 114 B TYR 1632 1_555 E CA CA . B CA 2679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc26 B OD1 ASP 115 B ASP 1633 1_555 E CA CA . B CA 2679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc27 B OD2 ASP 115 B ASP 1633 1_555 F CA CA . B CA 2680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc28 B OD1 ASP 115 B ASP 1633 1_555 F CA CA . B CA 2680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc29 B OD1 ASP 121 B ASP 1639 1_555 F CA CA . B CA 2680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc30 I O HOH . B HOH 2004 1_555 E CA CA . B CA 2679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2CM6 _atom_sites.fract_transf_matrix[1][1] 0.024957 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006172 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016777 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015517 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 1679 1679 CA CA . D 2 CA A 1 1680 1680 CA CA . E 2 CA B 1 2679 2679 CA CA . F 2 CA B 1 2680 2680 CA CA . G 3 PO4 B 1 2681 2681 PO4 PO4 . H 4 HOH A 1 2001 2001 HOH HOH . H 4 HOH A 2 2002 2002 HOH HOH . H 4 HOH A 3 2003 2003 HOH HOH . H 4 HOH A 4 2004 2004 HOH HOH . H 4 HOH A 5 2005 2005 HOH HOH . H 4 HOH A 6 2006 2006 HOH HOH . H 4 HOH A 7 2007 2007 HOH HOH . H 4 HOH A 8 2008 2008 HOH HOH . H 4 HOH A 9 2009 2009 HOH HOH . H 4 HOH A 10 2010 2010 HOH HOH . H 4 HOH A 11 2011 2011 HOH HOH . H 4 HOH A 12 2012 2012 HOH HOH . H 4 HOH A 13 2013 2013 HOH HOH . H 4 HOH A 14 2014 2014 HOH HOH . H 4 HOH A 15 2015 2015 HOH HOH . H 4 HOH A 16 2017 2017 HOH HOH . H 4 HOH A 17 2018 2018 HOH HOH . H 4 HOH A 18 2019 2019 HOH HOH . H 4 HOH A 19 2020 2020 HOH HOH . H 4 HOH A 20 2021 2021 HOH HOH . H 4 HOH A 21 2022 2022 HOH HOH . H 4 HOH A 22 2023 2023 HOH HOH . H 4 HOH A 23 2024 2024 HOH HOH . H 4 HOH A 24 2025 2025 HOH HOH . H 4 HOH A 25 2026 2026 HOH HOH . H 4 HOH A 26 2027 2027 HOH HOH . H 4 HOH A 27 2028 2028 HOH HOH . H 4 HOH A 28 2029 2029 HOH HOH . H 4 HOH A 29 2030 2030 HOH HOH . H 4 HOH A 30 2031 2031 HOH HOH . H 4 HOH A 31 2032 2032 HOH HOH . H 4 HOH A 32 2033 2033 HOH HOH . H 4 HOH A 33 2034 2034 HOH HOH . H 4 HOH A 34 2035 2035 HOH HOH . H 4 HOH A 35 2036 2036 HOH HOH . H 4 HOH A 36 2037 2037 HOH HOH . H 4 HOH A 37 2038 2038 HOH HOH . H 4 HOH A 38 2039 2039 HOH HOH . H 4 HOH A 39 2040 2040 HOH HOH . I 4 HOH B 1 2001 2001 HOH HOH . I 4 HOH B 2 2002 2002 HOH HOH . I 4 HOH B 3 2003 2003 HOH HOH . I 4 HOH B 4 2004 2004 HOH HOH . I 4 HOH B 5 2005 2005 HOH HOH . I 4 HOH B 6 2006 2006 HOH HOH . I 4 HOH B 7 2007 2007 HOH HOH . I 4 HOH B 8 2008 2008 HOH HOH . I 4 HOH B 9 2009 2009 HOH HOH . I 4 HOH B 10 2010 2010 HOH HOH . I 4 HOH B 11 2011 2011 HOH HOH . I 4 HOH B 12 2012 2012 HOH HOH . I 4 HOH B 13 2013 2013 HOH HOH . I 4 HOH B 14 2014 2014 HOH HOH . I 4 HOH B 15 2015 2015 HOH HOH . I 4 HOH B 16 2016 2016 HOH HOH . I 4 HOH B 17 2017 2017 HOH HOH . I 4 HOH B 18 2018 2018 HOH HOH . I 4 HOH B 19 2019 2019 HOH HOH . I 4 HOH B 20 2020 2020 HOH HOH . I 4 HOH B 21 2021 2021 HOH HOH . I 4 HOH B 22 2022 2022 HOH HOH . I 4 HOH B 23 2023 2023 HOH HOH . I 4 HOH B 24 2024 2024 HOH HOH . I 4 HOH B 25 2025 2025 HOH HOH . I 4 HOH B 26 2026 2026 HOH HOH . I 4 HOH B 27 2027 2027 HOH HOH . I 4 HOH B 28 2028 2028 HOH HOH . I 4 HOH B 29 2029 2029 HOH HOH . I 4 HOH B 30 2030 2030 HOH HOH . I 4 HOH B 31 2031 2031 HOH HOH . I 4 HOH B 32 2032 2032 HOH HOH . I 4 HOH B 33 2033 2033 HOH HOH . I 4 HOH B 34 2034 2034 HOH HOH . I 4 HOH B 35 2035 2035 HOH HOH . I 4 HOH B 36 2036 2036 HOH HOH . I 4 HOH B 37 2037 2037 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 15.82 _atom_site.Cartn_y 16.821 _atom_site.Cartn_z 18.783 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.34 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1680 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 435 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #