data_2CM9 # _model_server_result.job_id iHaNYr8IJsb6LF_XRDlI0A _model_server_result.datetime_utc '2025-07-07 08:29:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2cm9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1169}' # _entry.id 2CM9 # _exptl.entry_id 2CM9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 298.461 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'RICINOLEIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2CM9 _cell.length_a 45.09 _cell.length_b 54 _cell.length_c 55.03 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CM9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 24 1_555 A SG CYS 128 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 38 A CYS 56 1_555 A SG CYS 150 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 100 A CYS 118 1_555 A SG CYS 129 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C18 H34 O3' _chem_comp.formula_weight 298.461 _chem_comp.id RCL _chem_comp.mon_nstd_flag . _chem_comp.name 'RICINOLEIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 RCL sing 262 n n O1 HO1 RCL sing 263 n n C1 O2 RCL doub 264 n n C1 C2 RCL sing 265 n n C2 C3 RCL sing 266 n n C2 H21 RCL sing 267 n n C2 H22 RCL sing 268 n n C3 C4 RCL sing 269 n n C3 H31 RCL sing 270 n n C3 H32 RCL sing 271 n n C4 C5 RCL sing 272 n n C4 H41 RCL sing 273 n n C4 H42 RCL sing 274 n n C5 C6 RCL sing 275 n n C5 H51 RCL sing 276 n n C5 H52 RCL sing 277 n n C6 C7 RCL sing 278 n n C6 H61 RCL sing 279 n n C6 H62 RCL sing 280 n n C7 C8 RCL sing 281 n n C7 H71 RCL sing 282 n n C7 H72 RCL sing 283 n n C8 C9 RCL sing 284 n n C8 H81 RCL sing 285 n n C8 H82 RCL sing 286 n n C9 C10 RCL doub 287 e n C9 H9 RCL sing 288 n n C10 C11 RCL sing 289 n n C10 H10 RCL sing 290 n n C11 C12 RCL sing 291 n n C11 H111 RCL sing 292 n n C11 H112 RCL sing 293 n n C12 O12 RCL sing 294 n n C12 C13 RCL sing 295 n n C12 H12 RCL sing 296 n n O12 HO12 RCL sing 297 n n C13 C14 RCL sing 298 n n C13 H131 RCL sing 299 n n C13 H132 RCL sing 300 n n C14 C15 RCL sing 301 n n C14 H141 RCL sing 302 n n C14 H142 RCL sing 303 n n C15 C16 RCL sing 304 n n C15 H151 RCL sing 305 n n C15 H152 RCL sing 306 n n C16 C17 RCL sing 307 n n C16 H161 RCL sing 308 n n C16 H162 RCL sing 309 n n C17 C18 RCL sing 310 n n C17 H171 RCL sing 311 n n C17 H172 RCL sing 312 n n C18 H181 RCL sing 313 n n C18 H182 RCL sing 314 n n C18 H183 RCL sing 315 n n # _atom_sites.entry_id 2CM9 _atom_sites.fract_transf_matrix[1][1] 0.022177 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018518 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RCL A 1 1169 1169 RCL RCL . C 3 ACT A 1 1170 1170 ACT ACT . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 RCL . . . B 2 14.306 0.511 -16.394 1 50.43 ? O1 RCL 1169 A 1 HETATM 2 C C1 RCL . . . B 2 15.545 0.352 -16.797 1 49.69 ? C1 RCL 1169 A 1 HETATM 3 O O2 RCL . . . B 2 16.028 1.114 -17.608 1 50.78 ? O2 RCL 1169 A 1 HETATM 4 C C2 RCL . . . B 2 16.389 -0.807 -16.235 1 47.03 ? C2 RCL 1169 A 1 HETATM 5 C C3 RCL . . . B 2 16.712 -0.511 -14.76 1 43.72 ? C3 RCL 1169 A 1 HETATM 6 C C4 RCL . . . B 2 15.392 -0.363 -13.982 1 40.07 ? C4 RCL 1169 A 1 HETATM 7 C C5 RCL . . . B 2 15.701 0.115 -12.552 1 36.74 ? C5 RCL 1169 A 1 HETATM 8 C C6 RCL . . . B 2 15.233 -0.963 -11.558 1 33.54 ? C6 RCL 1169 A 1 HETATM 9 C C7 RCL . . . B 2 15.815 -0.656 -10.165 1 31 ? C7 RCL 1169 A 1 HETATM 10 C C8 RCL . . . B 2 16.132 -1.99 -9.46 1 28.56 ? C8 RCL 1169 A 1 HETATM 11 C C9 RCL . . . B 2 16.087 -1.798 -7.962 1 25.93 ? C9 RCL 1169 A 1 HETATM 12 C C10 RCL . . . B 2 16.256 -2.85 -7.152 1 23.84 ? C10 RCL 1169 A 1 HETATM 13 C C11 RCL . . . B 2 16.479 -4.232 -7.74 1 21.68 ? C11 RCL 1169 A 1 HETATM 14 C C12 RCL . . . B 2 17.532 -4.99 -6.909 1 20.12 ? C12 RCL 1169 A 1 HETATM 15 O O12 RCL . . . B 2 16.913 -5.553 -5.737 1 19.91 ? O12 RCL 1169 A 1 HETATM 16 C C13 RCL . . . B 2 18.625 -4.004 -6.47 1 19.04 ? C13 RCL 1169 A 1 HETATM 17 C C14 RCL . . . B 2 19.976 -4.495 -7.014 1 18.18 ? C14 RCL 1169 A 1 HETATM 18 C C15 RCL . . . B 2 21.096 -3.999 -6.082 1 17.71 ? C15 RCL 1169 A 1 HETATM 19 C C16 RCL . . . B 2 21.961 -2.987 -6.853 1 17.51 ? C16 RCL 1169 A 1 HETATM 20 C C17 RCL . . . B 2 23.127 -2.531 -5.955 1 17.52 ? C17 RCL 1169 A 1 HETATM 21 C C18 RCL . . . B 2 22.686 -1.3 -5.144 1 16.95 ? C18 RCL 1169 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 21 #