data_2CMC # _model_server_result.job_id 9WoUcmkRvOi95pT5E1zqIQ _model_server_result.datetime_utc '2024-11-28 17:18:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2cmc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1281}' # _entry.id 2CMC # _exptl.entry_id 2CMC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.402 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-ACETYL-L-PHENYLALANYL-4-[DIFLUORO(PHOSPHONO)METHYL]-L-PHENYLALANINAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2CMC _cell.length_a 62.2 _cell.length_b 70.9 _cell.length_c 83.31 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CMC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H24 F2 N3 O6 P' _chem_comp.formula_weight 483.402 _chem_comp.id DFM _chem_comp.mon_nstd_flag . _chem_comp.name N-ACETYL-L-PHENYLALANYL-4-[DIFLUORO(PHOSPHONO)METHYL]-L-PHENYLALANINAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'DIFLUOROMETHYLPHOSPHONIC ACID ANALOG' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C11 DFM sing 131 n n C1 F66 DFM sing 132 n n C1 F67 DFM sing 133 n n C1 P68 DFM sing 134 n n O6 P68 DFM sing 135 n n O6 HO6 DFM sing 136 n n O7 P68 DFM sing 137 n n O7 HO7 DFM sing 138 n n O9 P68 DFM doub 139 n n C11 C12 DFM sing 140 n y C11 C16 DFM doub 141 n y C12 C13 DFM doub 142 n y C12 H12 DFM sing 143 n n C13 C14 DFM sing 144 n y C13 H13 DFM sing 145 n n C14 C15 DFM doub 146 n y C14 C21 DFM sing 147 n n C15 C16 DFM sing 148 n y C15 H15 DFM sing 149 n n C16 H16 DFM sing 150 n n C21 C22 DFM sing 151 n n C21 H211 DFM sing 152 n n C21 H212 DFM sing 153 n n C22 C25 DFM sing 154 n n C22 N45 DFM sing 155 n n C22 H22 DFM sing 156 n n C25 O26 DFM doub 157 n n C25 N27 DFM sing 158 n n N27 H271 DFM sing 159 n n N27 H272 DFM sing 160 n n N45 C47 DFM sing 161 n n N45 H45 DFM sing 162 n n C47 C48 DFM sing 163 n n C47 O49 DFM doub 164 n n C48 N51 DFM sing 165 n n C48 C4 DFM sing 166 n n C48 H48 DFM sing 167 n n N51 C67 DFM sing 168 n n N51 H51 DFM sing 169 n n C4 C5 DFM sing 170 n n C4 H4C1 DFM sing 171 n n C4 H4C2 DFM sing 172 n n C5 C30 DFM sing 173 n y C5 C34 DFM doub 174 n y C30 C31 DFM doub 175 n y C30 H30 DFM sing 176 n n C31 C6 DFM sing 177 n y C31 H31 DFM sing 178 n n C6 C33 DFM doub 179 n y C6 H6 DFM sing 180 n n C33 C34 DFM sing 181 n y C33 H33 DFM sing 182 n n C34 H34 DFM sing 183 n n C67 O70 DFM doub 184 n n C67 C71 DFM sing 185 n n C71 H711 DFM sing 186 n n C71 H712 DFM sing 187 n n C71 H713 DFM sing 188 n n # _atom_sites.entry_id 2CMC _atom_sites.fract_transf_matrix[1][1] 0.016077 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014104 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012003 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DFM A 1 1281 1281 DFM DFM . C 3 SO4 A 1 1282 1282 SO4 SO4 . D 4 BOG A 1 1283 1283 BOG BOG . E 5 HOH A 1 2001 2001 HOH HOH . E 5 HOH A 2 2002 2002 HOH HOH . E 5 HOH A 3 2003 2003 HOH HOH . E 5 HOH A 4 2004 2004 HOH HOH . E 5 HOH A 5 2005 2005 HOH HOH . E 5 HOH A 6 2006 2006 HOH HOH . E 5 HOH A 7 2007 2007 HOH HOH . E 5 HOH A 8 2008 2008 HOH HOH . E 5 HOH A 9 2009 2009 HOH HOH . E 5 HOH A 10 2010 2010 HOH HOH . E 5 HOH A 11 2011 2011 HOH HOH . E 5 HOH A 12 2012 2012 HOH HOH . E 5 HOH A 13 2013 2013 HOH HOH . E 5 HOH A 14 2014 2014 HOH HOH . E 5 HOH A 15 2015 2015 HOH HOH . E 5 HOH A 16 2016 2016 HOH HOH . E 5 HOH A 17 2017 2017 HOH HOH . E 5 HOH A 18 2018 2018 HOH HOH . E 5 HOH A 19 2019 2019 HOH HOH . E 5 HOH A 20 2020 2020 HOH HOH . E 5 HOH A 21 2021 2021 HOH HOH . E 5 HOH A 22 2022 2022 HOH HOH . E 5 HOH A 23 2023 2023 HOH HOH . E 5 HOH A 24 2024 2024 HOH HOH . E 5 HOH A 25 2025 2025 HOH HOH . E 5 HOH A 26 2026 2026 HOH HOH . E 5 HOH A 27 2027 2027 HOH HOH . E 5 HOH A 28 2028 2028 HOH HOH . E 5 HOH A 29 2029 2029 HOH HOH . E 5 HOH A 30 2030 2030 HOH HOH . E 5 HOH A 31 2031 2031 HOH HOH . E 5 HOH A 32 2032 2032 HOH HOH . E 5 HOH A 33 2033 2033 HOH HOH . E 5 HOH A 34 2034 2034 HOH HOH . E 5 HOH A 35 2035 2035 HOH HOH . E 5 HOH A 36 2036 2036 HOH HOH . E 5 HOH A 37 2037 2037 HOH HOH . E 5 HOH A 38 2038 2038 HOH HOH . E 5 HOH A 39 2039 2039 HOH HOH . E 5 HOH A 40 2040 2040 HOH HOH . E 5 HOH A 41 2041 2041 HOH HOH . E 5 HOH A 42 2042 2042 HOH HOH . E 5 HOH A 43 2043 2043 HOH HOH . E 5 HOH A 44 2044 2044 HOH HOH . E 5 HOH A 45 2045 2045 HOH HOH . E 5 HOH A 46 2046 2046 HOH HOH . E 5 HOH A 47 2047 2047 HOH HOH . E 5 HOH A 48 2048 2048 HOH HOH . E 5 HOH A 49 2049 2049 HOH HOH . E 5 HOH A 50 2050 2050 HOH HOH . E 5 HOH A 51 2051 2051 HOH HOH . E 5 HOH A 52 2052 2052 HOH HOH . E 5 HOH A 53 2053 2053 HOH HOH . E 5 HOH A 54 2054 2054 HOH HOH . E 5 HOH A 55 2055 2055 HOH HOH . E 5 HOH A 56 2056 2056 HOH HOH . E 5 HOH A 57 2057 2057 HOH HOH . E 5 HOH A 58 2058 2058 HOH HOH . E 5 HOH A 59 2059 2059 HOH HOH . E 5 HOH A 60 2060 2060 HOH HOH . E 5 HOH A 61 2061 2061 HOH HOH . E 5 HOH A 62 2062 2062 HOH HOH . E 5 HOH A 63 2063 2063 HOH HOH . E 5 HOH A 64 2064 2064 HOH HOH . E 5 HOH A 65 2065 2065 HOH HOH . E 5 HOH A 66 2066 2066 HOH HOH . E 5 HOH A 67 2067 2067 HOH HOH . E 5 HOH A 68 2068 2068 HOH HOH . E 5 HOH A 69 2069 2069 HOH HOH . E 5 HOH A 70 2070 2070 HOH HOH . E 5 HOH A 71 2071 2071 HOH HOH . E 5 HOH A 72 2072 2072 HOH HOH . E 5 HOH A 73 2073 2073 HOH HOH . E 5 HOH A 74 2074 2074 HOH HOH . E 5 HOH A 75 2075 2075 HOH HOH . E 5 HOH A 76 2076 2076 HOH HOH . E 5 HOH A 77 2077 2077 HOH HOH . E 5 HOH A 78 2078 2078 HOH HOH . E 5 HOH A 79 2079 2079 HOH HOH . E 5 HOH A 80 2080 2080 HOH HOH . E 5 HOH A 81 2081 2081 HOH HOH . E 5 HOH A 82 2082 2082 HOH HOH . E 5 HOH A 83 2083 2083 HOH HOH . E 5 HOH A 84 2084 2084 HOH HOH . E 5 HOH A 85 2085 2085 HOH HOH . E 5 HOH A 86 2086 2086 HOH HOH . E 5 HOH A 87 2087 2087 HOH HOH . E 5 HOH A 88 2088 2088 HOH HOH . E 5 HOH A 89 2089 2089 HOH HOH . E 5 HOH A 90 2090 2090 HOH HOH . E 5 HOH A 91 2091 2091 HOH HOH . E 5 HOH A 92 2092 2092 HOH HOH . E 5 HOH A 93 2093 2093 HOH HOH . E 5 HOH A 94 2094 2094 HOH HOH . E 5 HOH A 95 2095 2095 HOH HOH . E 5 HOH A 96 2096 2096 HOH HOH . E 5 HOH A 97 2097 2097 HOH HOH . E 5 HOH A 98 2098 2098 HOH HOH . E 5 HOH A 99 2099 2099 HOH HOH . E 5 HOH A 100 2100 2100 HOH HOH . E 5 HOH A 101 2101 2101 HOH HOH . E 5 HOH A 102 2102 2102 HOH HOH . E 5 HOH A 103 2103 2103 HOH HOH . E 5 HOH A 104 2104 2104 HOH HOH . E 5 HOH A 105 2105 2105 HOH HOH . E 5 HOH A 106 2106 2106 HOH HOH . E 5 HOH A 107 2107 2107 HOH HOH . E 5 HOH A 108 2108 2108 HOH HOH . E 5 HOH A 109 2109 2109 HOH HOH . E 5 HOH A 110 2110 2110 HOH HOH . E 5 HOH A 111 2111 2111 HOH HOH . E 5 HOH A 112 2112 2112 HOH HOH . E 5 HOH A 113 2113 2113 HOH HOH . E 5 HOH A 114 2114 2114 HOH HOH . E 5 HOH A 115 2115 2115 HOH HOH . E 5 HOH A 116 2116 2116 HOH HOH . E 5 HOH A 117 2117 2117 HOH HOH . E 5 HOH A 118 2118 2118 HOH HOH . E 5 HOH A 119 2119 2119 HOH HOH . E 5 HOH A 120 2120 2120 HOH HOH . E 5 HOH A 121 2121 2121 HOH HOH . E 5 HOH A 122 2122 2122 HOH HOH . E 5 HOH A 123 2123 2123 HOH HOH . E 5 HOH A 124 2124 2124 HOH HOH . E 5 HOH A 125 2125 2125 HOH HOH . E 5 HOH A 126 2126 2126 HOH HOH . E 5 HOH A 127 2127 2127 HOH HOH . E 5 HOH A 128 2128 2128 HOH HOH . E 5 HOH A 129 2129 2129 HOH HOH . E 5 HOH A 130 2130 2130 HOH HOH . E 5 HOH A 131 2131 2131 HOH HOH . E 5 HOH A 132 2132 2132 HOH HOH . E 5 HOH A 133 2133 2133 HOH HOH . E 5 HOH A 134 2134 2134 HOH HOH . E 5 HOH A 135 2135 2135 HOH HOH . E 5 HOH A 136 2136 2136 HOH HOH . E 5 HOH A 137 2137 2137 HOH HOH . E 5 HOH A 138 2138 2138 HOH HOH . E 5 HOH A 139 2139 2139 HOH HOH . E 5 HOH A 140 2140 2140 HOH HOH . E 5 HOH A 141 2141 2141 HOH HOH . E 5 HOH A 142 2142 2142 HOH HOH . E 5 HOH A 143 2143 2143 HOH HOH . E 5 HOH A 144 2144 2144 HOH HOH . E 5 HOH A 145 2145 2145 HOH HOH . E 5 HOH A 146 2146 2146 HOH HOH . E 5 HOH A 147 2147 2147 HOH HOH . E 5 HOH A 148 2148 2148 HOH HOH . E 5 HOH A 149 2149 2149 HOH HOH . E 5 HOH A 150 2150 2150 HOH HOH . E 5 HOH A 151 2151 2151 HOH HOH . E 5 HOH A 152 2152 2152 HOH HOH . E 5 HOH A 153 2153 2153 HOH HOH . E 5 HOH A 154 2154 2154 HOH HOH . E 5 HOH A 155 2155 2155 HOH HOH . E 5 HOH A 156 2156 2156 HOH HOH . E 5 HOH A 157 2157 2157 HOH HOH . E 5 HOH A 158 2158 2158 HOH HOH . E 5 HOH A 159 2159 2159 HOH HOH . E 5 HOH A 160 2160 2160 HOH HOH . E 5 HOH A 161 2161 2161 HOH HOH . E 5 HOH A 162 2162 2162 HOH HOH . E 5 HOH A 163 2163 2163 HOH HOH . E 5 HOH A 164 2164 2164 HOH HOH . E 5 HOH A 165 2165 2165 HOH HOH . E 5 HOH A 166 2166 2166 HOH HOH . E 5 HOH A 167 2167 2167 HOH HOH . E 5 HOH A 168 2168 2168 HOH HOH . E 5 HOH A 169 2169 2169 HOH HOH . E 5 HOH A 170 2170 2170 HOH HOH . E 5 HOH A 171 2171 2171 HOH HOH . E 5 HOH A 172 2172 2172 HOH HOH . E 5 HOH A 173 2173 2173 HOH HOH . E 5 HOH A 174 2174 2174 HOH HOH . E 5 HOH A 175 2175 2175 HOH HOH . E 5 HOH A 176 2176 2176 HOH HOH . E 5 HOH A 177 2177 2177 HOH HOH . E 5 HOH A 178 2178 2178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DFM . . . B 2 26.072 31.429 19.61 1 15.32 ? C1 DFM 1281 A 1 HETATM 2 O O6 DFM . . . B 2 25.173 33.282 21.665 1 16.86 ? O6 DFM 1281 A 1 HETATM 3 O O7 DFM . . . B 2 24.567 30.581 21.94 1 17.61 ? O7 DFM 1281 A 1 HETATM 4 O O9 DFM . . . B 2 27.237 31.551 22.272 1 16.88 ? O9 DFM 1281 A 1 HETATM 5 C C11 DFM . . . B 2 24.911 31.36 18.742 1 14.13 ? C11 DFM 1281 A 1 HETATM 6 C C12 DFM . . . B 2 24.507 32.599 18.105 1 12.15 ? C12 DFM 1281 A 1 HETATM 7 C C13 DFM . . . B 2 23.302 32.562 17.274 1 15.08 ? C13 DFM 1281 A 1 HETATM 8 C C14 DFM . . . B 2 22.577 31.304 17.109 1 14.61 ? C14 DFM 1281 A 1 HETATM 9 C C15 DFM . . . B 2 22.981 30.039 17.723 1 15.51 ? C15 DFM 1281 A 1 HETATM 10 C C16 DFM . . . B 2 24.192 30.093 18.556 1 15.09 ? C16 DFM 1281 A 1 HETATM 11 C C21 DFM . . . B 2 21.335 31.24 16.241 1 15.36 ? C21 DFM 1281 A 1 HETATM 12 C C22 DFM . . . B 2 21.58 31.681 14.784 1 18.73 ? C22 DFM 1281 A 1 HETATM 13 C C25 DFM . . . B 2 22.622 30.788 14.105 1 19.16 ? C25 DFM 1281 A 1 HETATM 14 O O26 DFM . . . B 2 23.762 31.188 13.878 1 19.96 ? O26 DFM 1281 A 1 HETATM 15 N N27 DFM . . . B 2 22.27 29.54 13.789 1 19.31 ? N27 DFM 1281 A 1 HETATM 16 N N45 DFM . . . B 2 20.288 31.636 14.073 1 21.56 ? N45 DFM 1281 A 1 HETATM 17 C C47 DFM . . . B 2 20.054 32.519 13.111 1 21.14 ? C47 DFM 1281 A 1 HETATM 18 C C48 DFM . . . B 2 18.767 32.392 12.335 1 22.83 ? C48 DFM 1281 A 1 HETATM 19 O O49 DFM . . . B 2 20.852 33.412 12.877 1 20.95 ? O49 DFM 1281 A 1 HETATM 20 N N51 DFM . . . B 2 18.121 33.708 12.323 1 22.61 ? N51 DFM 1281 A 1 HETATM 21 C C4 DFM . . . B 2 19.041 31.987 10.887 1 22.29 ? C4 DFM 1281 A 1 HETATM 22 C C5 DFM . . . B 2 19.814 30.696 10.765 1 20.73 ? C5 DFM 1281 A 1 HETATM 23 C C30 DFM . . . B 2 19.19 29.441 11.17 1 20.78 ? C30 DFM 1281 A 1 HETATM 24 C C31 DFM . . . B 2 19.962 28.201 11.11 1 17.78 ? C31 DFM 1281 A 1 HETATM 25 C C6 DFM . . . B 2 21.342 28.297 10.636 1 19.33 ? C6 DFM 1281 A 1 HETATM 26 C C33 DFM . . . B 2 21.973 29.552 10.221 1 20.59 ? C33 DFM 1281 A 1 HETATM 27 C C34 DFM . . . B 2 21.19 30.791 10.278 1 21.68 ? C34 DFM 1281 A 1 HETATM 28 C C67 DFM . . . B 2 17.013 33.901 13.031 1 23.93 ? C67 DFM 1281 A 1 HETATM 29 O O70 DFM . . . B 2 16.397 32.936 13.517 1 23.77 ? O70 DFM 1281 A 1 HETATM 30 C C71 DFM . . . B 2 16.491 35.31 13.214 1 23.4 ? C71 DFM 1281 A 1 HETATM 31 F F66 DFM . . . B 2 27.084 32.428 19.132 1 19.15 ? F66 DFM 1281 A 1 HETATM 32 F F67 DFM . . . B 2 26.828 30.159 19.461 1 15.87 ? F67 DFM 1281 A 1 HETATM 33 P P68 DFM . . . B 2 25.744 31.724 21.398 1 17.73 ? P68 DFM 1281 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 33 #