data_2CNM # _model_server_result.job_id hkmz55NOs4kgjF_6qXtyLg _model_server_result.datetime_utc '2024-11-18 12:34:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2cnm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":0}' # _entry.id 2CNM # _exptl.entry_id 2CNM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2CNM _cell.length_a 133.127 _cell.length_b 133.127 _cell.length_c 190.986 _cell.Z_PDB 54 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CNM _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 software_defined_assembly 1 PQS dimeric 2 software_defined_assembly 2 PQS dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G,J,M 1 1 B,E,H,K,N 2 1 C,F,I,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G S1P COA . D COA 0 1_555 D CH3 ACE 1 D ACE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? covale ? covale2 D C ACE 1 D ACE 1 1_555 D N ALA 2 D ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 H S1P COA . E COA 0 1_555 E CH3 ACE 1 E ACE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? covale ? covale4 E C ACE 1 E ACE 1 1_555 E N ALA 2 E ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 I S1P COA . F COA 0 1_555 F CH3 ACE 1 F ACE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? covale ? covale6 F C ACE 1 F ACE 1 1_555 F N ALA 2 F ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2CNM _atom_sites.fract_transf_matrix[1][1] 0.007512 _atom_sites.fract_transf_matrix[1][2] 0.004337 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008674 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005236 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 COA D 1 0 0 COA COA . H 3 COA E 1 0 0 COA COA . I 3 COA F 1 0 0 COA COA . J 4 HOH A 1 2001 2001 HOH HOH . J 4 HOH A 2 2002 2002 HOH HOH . J 4 HOH A 3 2003 2003 HOH HOH . J 4 HOH A 4 2004 2004 HOH HOH . J 4 HOH A 5 2005 2005 HOH HOH . J 4 HOH A 6 2006 2006 HOH HOH . J 4 HOH A 7 2007 2007 HOH HOH . J 4 HOH A 8 2008 2008 HOH HOH . J 4 HOH A 9 2009 2009 HOH HOH . J 4 HOH A 10 2010 2010 HOH HOH . J 4 HOH A 11 2011 2011 HOH HOH . J 4 HOH A 12 2012 2012 HOH HOH . J 4 HOH A 13 2013 2013 HOH HOH . J 4 HOH A 14 2014 2014 HOH HOH . J 4 HOH A 15 2015 2015 HOH HOH . J 4 HOH A 16 2016 2016 HOH HOH . J 4 HOH A 17 2017 2017 HOH HOH . J 4 HOH A 18 2018 2018 HOH HOH . J 4 HOH A 19 2019 2019 HOH HOH . K 4 HOH B 1 2001 2001 HOH HOH . K 4 HOH B 2 2002 2002 HOH HOH . K 4 HOH B 3 2003 2003 HOH HOH . K 4 HOH B 4 2004 2004 HOH HOH . K 4 HOH B 5 2005 2005 HOH HOH . K 4 HOH B 6 2006 2006 HOH HOH . K 4 HOH B 7 2007 2007 HOH HOH . K 4 HOH B 8 2008 2008 HOH HOH . K 4 HOH B 9 2009 2009 HOH HOH . K 4 HOH B 10 2010 2010 HOH HOH . K 4 HOH B 11 2011 2011 HOH HOH . K 4 HOH B 12 2012 2012 HOH HOH . K 4 HOH B 13 2013 2013 HOH HOH . K 4 HOH B 14 2014 2014 HOH HOH . K 4 HOH B 15 2015 2015 HOH HOH . K 4 HOH B 16 2016 2016 HOH HOH . K 4 HOH B 17 2017 2017 HOH HOH . K 4 HOH B 18 2018 2018 HOH HOH . K 4 HOH B 19 2019 2019 HOH HOH . K 4 HOH B 20 2020 2020 HOH HOH . K 4 HOH B 21 2021 2021 HOH HOH . K 4 HOH B 22 2022 2022 HOH HOH . K 4 HOH B 23 2023 2023 HOH HOH . L 4 HOH C 1 2001 2001 HOH HOH . L 4 HOH C 2 2002 2002 HOH HOH . L 4 HOH C 3 2003 2003 HOH HOH . L 4 HOH C 4 2004 2004 HOH HOH . L 4 HOH C 5 2005 2005 HOH HOH . L 4 HOH C 6 2006 2006 HOH HOH . L 4 HOH C 7 2007 2007 HOH HOH . L 4 HOH C 8 2008 2008 HOH HOH . L 4 HOH C 9 2009 2009 HOH HOH . L 4 HOH C 10 2010 2010 HOH HOH . L 4 HOH C 11 2011 2011 HOH HOH . L 4 HOH C 12 2012 2012 HOH HOH . L 4 HOH C 13 2013 2013 HOH HOH . L 4 HOH C 14 2014 2014 HOH HOH . L 4 HOH C 15 2015 2015 HOH HOH . M 4 HOH D 1 2001 2001 HOH HOH . N 4 HOH E 1 2001 2001 HOH HOH . N 4 HOH E 2 2002 2002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . H 3 35.299 -4.179 15.717 1 54.39 ? N1A COA 0 E 1 HETATM 2 C C2A COA . . . H 3 35.523 -4.716 16.915 1 53.98 ? C2A COA 0 E 1 HETATM 3 N N3A COA . . . H 3 34.655 -4.512 17.901 1 54.32 ? N3A COA 0 E 1 HETATM 4 C C4A COA . . . H 3 33.527 -3.778 17.723 1 54.65 ? C4A COA 0 E 1 HETATM 5 C C5A COA . . . H 3 33.26 -3.199 16.492 1 54.72 ? C5A COA 0 E 1 HETATM 6 C C6A COA . . . H 3 34.192 -3.423 15.476 1 54.58 ? C6A COA 0 E 1 HETATM 7 N N6A COA . . . H 3 34.001 -2.871 14.278 1 54.37 ? N6A COA 0 E 1 HETATM 8 N N7A COA . . . H 3 32.102 -2.527 16.594 1 54.52 ? N7A COA 0 E 1 HETATM 9 C C8A COA . . . H 3 31.645 -2.674 17.847 1 54.25 ? C8A COA 0 E 1 HETATM 10 N N9A COA . . . H 3 32.52 -3.431 18.527 1 54.05 ? N9A COA 0 E 1 HETATM 11 C C1B COA . . . H 3 32.411 -3.918 19.919 1 52.53 ? C1B COA 0 E 1 HETATM 12 C C2B COA . . . H 3 33.167 -3.214 21.028 1 50.56 ? C2B COA 0 E 1 HETATM 13 O O2B COA . . . H 3 33.879 -4.209 21.788 1 51.28 ? O2B COA 0 E 1 HETATM 14 C C3B COA . . . H 3 31.994 -2.647 21.827 1 48.69 ? C3B COA 0 E 1 HETATM 15 O O3B COA . . . H 3 32.316 -2.476 23.194 1 48.13 ? O3B COA 0 E 1 HETATM 16 P P3B COA . . . H 3 33.242 -1.176 23.466 1 51.17 ? P3B COA 0 E 1 HETATM 17 O O7A COA . . . H 3 33.276 -0.972 25.084 1 49.93 ? O7A COA 0 E 1 HETATM 18 O O8A COA . . . H 3 32.488 0.178 22.786 1 49.57 ? O8A COA 0 E 1 HETATM 19 O O9A COA . . . H 3 34.622 -1.372 22.942 1 50.45 ? O9A COA 0 E 1 HETATM 20 C C4B COA . . . H 3 30.929 -3.709 21.668 1 46.52 ? C4B COA 0 E 1 HETATM 21 O O4B COA . . . H 3 30.981 -3.955 20.276 1 48.63 ? O4B COA 0 E 1 HETATM 22 C C5B COA . . . H 3 29.83 -2.719 21.808 1 42.03 ? C5B COA 0 E 1 HETATM 23 O O5B COA . . . H 3 29.086 -2.889 22.964 1 34.97 ? O5B COA 0 E 1 HETATM 24 P P1A COA . . . H 3 27.693 -2.204 22.921 1 31.53 ? P1A COA 0 E 1 HETATM 25 O O1A COA . . . H 3 27.912 -0.755 22.735 1 33.94 ? O1A COA 0 E 1 HETATM 26 O O2A COA . . . H 3 26.935 -2.69 24.089 1 34.56 ? O2A COA 0 E 1 HETATM 27 O O3A COA . . . H 3 27.029 -2.789 21.623 1 30.37 ? O3A COA 0 E 1 HETATM 28 P P2A COA . . . H 3 25.469 -2.842 21.28 1 29.68 ? P2A COA 0 E 1 HETATM 29 O O4A COA . . . H 3 24.608 -2.241 22.32 1 31.93 ? O4A COA 0 E 1 HETATM 30 O O5A COA . . . H 3 25.313 -2.33 19.917 1 31.27 ? O5A COA 0 E 1 HETATM 31 O O6A COA . . . H 3 25.226 -4.4 21.332 1 28.34 ? O6A COA 0 E 1 HETATM 32 C CBP COA . . . H 3 24.656 -6.093 19.583 1 28.64 ? CBP COA 0 E 1 HETATM 33 C CCP COA . . . H 3 25.759 -5.326 20.377 1 28.94 ? CCP COA 0 E 1 HETATM 34 C CDP COA . . . H 3 25.279 -7.003 18.526 1 27.43 ? CDP COA 0 E 1 HETATM 35 C CEP COA . . . H 3 23.802 -6.953 20.514 1 26.08 ? CEP COA 0 E 1 HETATM 36 C CAP COA . . . H 3 23.804 -5.035 18.876 1 28.52 ? CAP COA 0 E 1 HETATM 37 O OAP COA . . . H 3 24.686 -4.238 18.093 1 28.28 ? OAP COA 0 E 1 HETATM 38 C C9P COA . . . H 3 22.711 -5.645 17.996 1 29.29 ? C9P COA 0 E 1 HETATM 39 O O9P COA . . . H 3 21.683 -6.084 18.516 1 30.83 ? O9P COA 0 E 1 HETATM 40 N N8P COA . . . H 3 22.964 -5.653 16.682 1 27.39 ? N8P COA 0 E 1 HETATM 41 C C7P COA . . . H 3 22.015 -6.197 15.694 1 27.81 ? C7P COA 0 E 1 HETATM 42 C C6P COA . . . H 3 21.526 -7.616 15.991 1 28.2 ? C6P COA 0 E 1 HETATM 43 C C5P COA . . . H 3 22.693 -8.525 16.326 1 29.73 ? C5P COA 0 E 1 HETATM 44 O O5P COA . . . H 3 23.736 -8.48 15.675 1 32.18 ? O5P COA 0 E 1 HETATM 45 N N4P COA . . . H 3 22.503 -9.333 17.359 1 31.59 ? N4P COA 0 E 1 HETATM 46 C C3P COA . . . H 3 23.542 -10.27 17.816 1 32.15 ? C3P COA 0 E 1 HETATM 47 C C2P COA . . . H 3 23.358 -11.616 17.111 1 32.9 ? C2P COA 0 E 1 HETATM 48 S S1P COA . . . H 3 24.662 -12.791 17.64 1 35.86 ? S1P COA 0 E 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 48 #