data_2CNM # _model_server_result.job_id WZ8oSpuwBdALRRd1X9mvKg _model_server_result.datetime_utc '2025-07-07 15:13:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2cnm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":0}' # _entry.id 2CNM # _exptl.entry_id 2CNM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2CNM _cell.length_a 133.127 _cell.length_b 133.127 _cell.length_c 190.986 _cell.Z_PDB 54 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CNM _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 software_defined_assembly 1 PQS dimeric 2 software_defined_assembly 2 PQS dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G,J,M 1 1 B,E,H,K,N 2 1 C,F,I,L 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 H N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G S1P COA . D COA 0 1_555 D CH3 ACE 1 D ACE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.826 ? covale ? covale2 D C ACE 1 D ACE 1 1_555 D N ALA 2 D ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 H S1P COA . E COA 0 1_555 E CH3 ACE 1 E ACE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? covale ? covale4 E C ACE 1 E ACE 1 1_555 E N ALA 2 E ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale5 I S1P COA . F COA 0 1_555 F CH3 ACE 1 F ACE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? covale ? covale6 F C ACE 1 F ACE 1 1_555 F N ALA 2 F ALA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 76 n y N1A C6A COA doub 77 n y C2A N3A COA doub 78 n y C2A H2A COA sing 79 n n N3A C4A COA sing 80 n y C4A C5A COA doub 81 n y C4A N9A COA sing 82 n y C5A C6A COA sing 83 n y C5A N7A COA sing 84 n y C6A N6A COA sing 85 n n N6A H61A COA sing 86 n n N6A H62A COA sing 87 n n N7A C8A COA doub 88 n y C8A N9A COA sing 89 n y C8A H8A COA sing 90 n n N9A C1B COA sing 91 n n C1B C2B COA sing 92 n n C1B O4B COA sing 93 n n C1B H1B COA sing 94 n n C2B O2B COA sing 95 n n C2B C3B COA sing 96 n n C2B H2B COA sing 97 n n O2B HO2A COA sing 98 n n C3B O3B COA sing 99 n n C3B C4B COA sing 100 n n C3B H3B COA sing 101 n n O3B P3B COA sing 102 n n P3B O7A COA doub 103 n n P3B O8A COA sing 104 n n P3B O9A COA sing 105 n n O8A HOA8 COA sing 106 n n O9A HOA9 COA sing 107 n n C4B O4B COA sing 108 n n C4B C5B COA sing 109 n n C4B H4B COA sing 110 n n C5B O5B COA sing 111 n n C5B H51A COA sing 112 n n C5B H52A COA sing 113 n n O5B P1A COA sing 114 n n P1A O1A COA doub 115 n n P1A O2A COA sing 116 n n P1A O3A COA sing 117 n n O2A HOA2 COA sing 118 n n O3A P2A COA sing 119 n n P2A O4A COA doub 120 n n P2A O5A COA sing 121 n n P2A O6A COA sing 122 n n O5A HOA5 COA sing 123 n n O6A CCP COA sing 124 n n CBP CCP COA sing 125 n n CBP CDP COA sing 126 n n CBP CEP COA sing 127 n n CBP CAP COA sing 128 n n CCP H121 COA sing 129 n n CCP H122 COA sing 130 n n CDP H131 COA sing 131 n n CDP H132 COA sing 132 n n CDP H133 COA sing 133 n n CEP H141 COA sing 134 n n CEP H142 COA sing 135 n n CEP H143 COA sing 136 n n CAP OAP COA sing 137 n n CAP C9P COA sing 138 n n CAP H10 COA sing 139 n n OAP HO1 COA sing 140 n n C9P O9P COA doub 141 n n C9P N8P COA sing 142 n n N8P C7P COA sing 143 n n N8P HN8 COA sing 144 n n C7P C6P COA sing 145 n n C7P H71 COA sing 146 n n C7P H72 COA sing 147 n n C6P C5P COA sing 148 n n C6P H61 COA sing 149 n n C6P H62 COA sing 150 n n C5P O5P COA doub 151 n n C5P N4P COA sing 152 n n N4P C3P COA sing 153 n n N4P HN4 COA sing 154 n n C3P C2P COA sing 155 n n C3P H31 COA sing 156 n n C3P H32 COA sing 157 n n C2P S1P COA sing 158 n n C2P H21 COA sing 159 n n C2P H22 COA sing 160 n n S1P HS1 COA sing 161 n n # _atom_sites.entry_id 2CNM _atom_sites.fract_transf_matrix[1][1] 0.007512 _atom_sites.fract_transf_matrix[1][2] 0.004337 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008674 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005236 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 COA D 1 0 0 COA COA . H 3 COA E 1 0 0 COA COA . I 3 COA F 1 0 0 COA COA . J 4 HOH A 1 2001 2001 HOH HOH . J 4 HOH A 2 2002 2002 HOH HOH . J 4 HOH A 3 2003 2003 HOH HOH . J 4 HOH A 4 2004 2004 HOH HOH . J 4 HOH A 5 2005 2005 HOH HOH . J 4 HOH A 6 2006 2006 HOH HOH . J 4 HOH A 7 2007 2007 HOH HOH . J 4 HOH A 8 2008 2008 HOH HOH . J 4 HOH A 9 2009 2009 HOH HOH . J 4 HOH A 10 2010 2010 HOH HOH . J 4 HOH A 11 2011 2011 HOH HOH . J 4 HOH A 12 2012 2012 HOH HOH . J 4 HOH A 13 2013 2013 HOH HOH . J 4 HOH A 14 2014 2014 HOH HOH . J 4 HOH A 15 2015 2015 HOH HOH . J 4 HOH A 16 2016 2016 HOH HOH . J 4 HOH A 17 2017 2017 HOH HOH . J 4 HOH A 18 2018 2018 HOH HOH . J 4 HOH A 19 2019 2019 HOH HOH . K 4 HOH B 1 2001 2001 HOH HOH . K 4 HOH B 2 2002 2002 HOH HOH . K 4 HOH B 3 2003 2003 HOH HOH . K 4 HOH B 4 2004 2004 HOH HOH . K 4 HOH B 5 2005 2005 HOH HOH . K 4 HOH B 6 2006 2006 HOH HOH . K 4 HOH B 7 2007 2007 HOH HOH . K 4 HOH B 8 2008 2008 HOH HOH . K 4 HOH B 9 2009 2009 HOH HOH . K 4 HOH B 10 2010 2010 HOH HOH . K 4 HOH B 11 2011 2011 HOH HOH . K 4 HOH B 12 2012 2012 HOH HOH . K 4 HOH B 13 2013 2013 HOH HOH . K 4 HOH B 14 2014 2014 HOH HOH . K 4 HOH B 15 2015 2015 HOH HOH . K 4 HOH B 16 2016 2016 HOH HOH . K 4 HOH B 17 2017 2017 HOH HOH . K 4 HOH B 18 2018 2018 HOH HOH . K 4 HOH B 19 2019 2019 HOH HOH . K 4 HOH B 20 2020 2020 HOH HOH . K 4 HOH B 21 2021 2021 HOH HOH . K 4 HOH B 22 2022 2022 HOH HOH . K 4 HOH B 23 2023 2023 HOH HOH . L 4 HOH C 1 2001 2001 HOH HOH . L 4 HOH C 2 2002 2002 HOH HOH . L 4 HOH C 3 2003 2003 HOH HOH . L 4 HOH C 4 2004 2004 HOH HOH . L 4 HOH C 5 2005 2005 HOH HOH . L 4 HOH C 6 2006 2006 HOH HOH . L 4 HOH C 7 2007 2007 HOH HOH . L 4 HOH C 8 2008 2008 HOH HOH . L 4 HOH C 9 2009 2009 HOH HOH . L 4 HOH C 10 2010 2010 HOH HOH . L 4 HOH C 11 2011 2011 HOH HOH . L 4 HOH C 12 2012 2012 HOH HOH . L 4 HOH C 13 2013 2013 HOH HOH . L 4 HOH C 14 2014 2014 HOH HOH . L 4 HOH C 15 2015 2015 HOH HOH . M 4 HOH D 1 2001 2001 HOH HOH . N 4 HOH E 1 2001 2001 HOH HOH . N 4 HOH E 2 2002 2002 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . I 3 43.359 -35.225 66.723 1 62.84 ? N1A COA 0 F 1 HETATM 2 C C2A COA . . . I 3 42.161 -35.625 67.145 1 63.01 ? C2A COA 0 F 1 HETATM 3 N N3A COA . . . I 3 41.036 -35.149 66.611 1 62.99 ? N3A COA 0 F 1 HETATM 4 C C4A COA . . . I 3 41.083 -34.233 65.614 1 63.35 ? C4A COA 0 F 1 HETATM 5 C C5A COA . . . I 3 42.322 -33.785 65.151 1 63.53 ? C5A COA 0 F 1 HETATM 6 C C6A COA . . . I 3 43.471 -34.316 65.728 1 63 ? C6A COA 0 F 1 HETATM 7 N N6A COA . . . I 3 44.657 -33.907 65.289 1 62.82 ? N6A COA 0 F 1 HETATM 8 N N7A COA . . . I 3 42.117 -32.889 64.18 1 63.45 ? N7A COA 0 F 1 HETATM 9 C C8A COA . . . I 3 40.797 -32.786 64.033 1 63.01 ? C8A COA 0 F 1 HETATM 10 N N9A COA . . . I 3 40.151 -33.59 64.901 1 62.49 ? N9A COA 0 F 1 HETATM 11 C C1B COA . . . I 3 38.641 -33.722 65.055 1 61.75 ? C1B COA 0 F 1 HETATM 12 C C2B COA . . . I 3 38.154 -33.232 66.433 1 60.69 ? C2B COA 0 F 1 HETATM 13 O O2B COA . . . I 3 36.823 -33.654 66.759 1 60.64 ? O2B COA 0 F 1 HETATM 14 C C3B COA . . . I 3 38.14 -31.73 66.207 1 60.01 ? C3B COA 0 F 1 HETATM 15 O O3B COA . . . I 3 37.118 -31.114 66.968 1 61.7 ? O3B COA 0 F 1 HETATM 16 P P3B COA . . . I 3 37.703 -30.088 68.057 1 63.52 ? P3B COA 0 F 1 HETATM 17 O O7A COA . . . I 3 36.473 -29.033 68.232 1 62.66 ? O7A COA 0 F 1 HETATM 18 O O8A COA . . . I 3 38.977 -29.309 67.333 1 63.45 ? O8A COA 0 F 1 HETATM 19 O O9A COA . . . I 3 38.141 -30.811 69.284 1 64.06 ? O9A COA 0 F 1 HETATM 20 C C4B COA . . . I 3 37.906 -31.505 64.707 1 57.36 ? C4B COA 0 F 1 HETATM 21 O O4B COA . . . I 3 37.946 -32.834 64.121 1 59.57 ? O4B COA 0 F 1 HETATM 22 C C5B COA . . . I 3 39.113 -30.646 64.253 1 51.06 ? C5B COA 0 F 1 HETATM 23 O O5B COA . . . I 3 38.748 -29.383 63.79 1 42.56 ? O5B COA 0 F 1 HETATM 24 P P1A COA . . . I 3 39.872 -28.491 63.183 1 37.38 ? P1A COA 0 F 1 HETATM 25 O O1A COA . . . I 3 40.802 -28.057 64.235 1 39.72 ? O1A COA 0 F 1 HETATM 26 O O2A COA . . . I 3 39.179 -27.5 62.359 1 39.47 ? O2A COA 0 F 1 HETATM 27 O O3A COA . . . I 3 40.653 -29.432 62.21 1 34.22 ? O3A COA 0 F 1 HETATM 28 P P2A COA . . . I 3 41.816 -28.888 61.235 1 29.07 ? P2A COA 0 F 1 HETATM 29 O O4A COA . . . I 3 41.74 -27.427 61.032 1 27.74 ? O4A COA 0 F 1 HETATM 30 O O5A COA . . . I 3 43.081 -29.481 61.71 1 31.31 ? O5A COA 0 F 1 HETATM 31 O O6A COA . . . I 3 41.359 -29.647 59.967 1 27.51 ? O6A COA 0 F 1 HETATM 32 C CBP COA . . . I 3 42.024 -31.539 58.644 1 26.83 ? CBP COA 0 F 1 HETATM 33 C CCP COA . . . I 3 41.308 -31.061 59.916 1 25.8 ? CCP COA 0 F 1 HETATM 34 C CDP COA . . . I 3 41.875 -33.06 58.508 1 27.88 ? CDP COA 0 F 1 HETATM 35 C CEP COA . . . I 3 41.425 -30.838 57.415 1 25.94 ? CEP COA 0 F 1 HETATM 36 C CAP COA . . . I 3 43.516 -31.176 58.755 1 25.74 ? CAP COA 0 F 1 HETATM 37 O OAP COA . . . I 3 44.073 -31.782 59.912 1 20.9 ? OAP COA 0 F 1 HETATM 38 C C9P COA . . . I 3 44.302 -31.555 57.485 1 26.25 ? C9P COA 0 F 1 HETATM 39 O O9P COA . . . I 3 44.255 -30.802 56.498 1 28.77 ? O9P COA 0 F 1 HETATM 40 N N8P COA . . . I 3 45.008 -32.702 57.547 1 25.15 ? N8P COA 0 F 1 HETATM 41 C C7P COA . . . I 3 45.846 -33.234 56.434 1 23.19 ? C7P COA 0 F 1 HETATM 42 C C6P COA . . . I 3 45.065 -33.206 55.104 1 23.74 ? C6P COA 0 F 1 HETATM 43 C C5P COA . . . I 3 43.89 -34.179 55.183 1 23.67 ? C5P COA 0 F 1 HETATM 44 O O5P COA . . . I 3 44.031 -35.294 55.667 1 25.31 ? O5P COA 0 F 1 HETATM 45 N N4P COA . . . I 3 42.734 -33.764 54.705 1 24.74 ? N4P COA 0 F 1 HETATM 46 C C3P COA . . . I 3 41.533 -34.627 54.727 1 25.55 ? C3P COA 0 F 1 HETATM 47 C C2P COA . . . I 3 41.576 -35.672 53.615 1 27.17 ? C2P COA 0 F 1 HETATM 48 S S1P COA . . . I 3 39.992 -36.596 53.448 1 31.72 ? S1P COA 0 F 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #