data_2COJ # _model_server_result.job_id P-HyCf6KJM8yt4vLaLK0sg _model_server_result.datetime_utc '2024-11-15 13:22:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2coj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":410}' # _entry.id 2COJ # _exptl.entry_id 2COJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2COJ _cell.length_a 66.87 _cell.length_b 106.63 _cell.length_c 109.82 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2COJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 222 A LYS 222 1_555 C C4A PLP . A PLP 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale2 B NZ LYS 222 B LYS 222 1_555 F C4A PLP . B PLP 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? metalc ? metalc1 B OD1 ASP 133 B ASP 133 1_555 E MG MG . B MG 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc2 E MG MG . B MG 430 1_555 I O HOH . B HOH 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc3 E MG MG . B MG 430 1_555 I O HOH . B HOH 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc4 E MG MG . B MG 430 1_555 I O HOH . B HOH 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # _atom_sites.entry_id 2COJ _atom_sites.fract_transf_matrix[1][1] 0.014954 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009378 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009106 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLP A 1 410 410 PLP PLP . D 3 GBN A 1 420 420 GBN GBP . E 4 MG B 1 430 430 MG MG . F 2 PLP B 1 410 410 PLP PLP . G 3 GBN B 1 420 420 GBN GBP . H 5 HOH A 1 421 1 HOH HOH . H 5 HOH A 2 422 2 HOH HOH . H 5 HOH A 3 423 5 HOH HOH . H 5 HOH A 4 424 8 HOH HOH . H 5 HOH A 5 425 10 HOH HOH . H 5 HOH A 6 426 16 HOH HOH . H 5 HOH A 7 427 17 HOH HOH . H 5 HOH A 8 428 21 HOH HOH . H 5 HOH A 9 429 22 HOH HOH . H 5 HOH A 10 430 26 HOH HOH . H 5 HOH A 11 431 27 HOH HOH . H 5 HOH A 12 432 29 HOH HOH . H 5 HOH A 13 433 31 HOH HOH . H 5 HOH A 14 434 35 HOH HOH . H 5 HOH A 15 435 37 HOH HOH . H 5 HOH A 16 436 38 HOH HOH . H 5 HOH A 17 437 39 HOH HOH . H 5 HOH A 18 438 45 HOH HOH . H 5 HOH A 19 439 47 HOH HOH . H 5 HOH A 20 440 48 HOH HOH . H 5 HOH A 21 441 53 HOH HOH . H 5 HOH A 22 442 54 HOH HOH . H 5 HOH A 23 443 56 HOH HOH . H 5 HOH A 24 444 58 HOH HOH . H 5 HOH A 25 445 59 HOH HOH . H 5 HOH A 26 446 61 HOH HOH . H 5 HOH A 27 447 62 HOH HOH . H 5 HOH A 28 448 63 HOH HOH . H 5 HOH A 29 449 64 HOH HOH . H 5 HOH A 30 450 66 HOH HOH . H 5 HOH A 31 451 71 HOH HOH . H 5 HOH A 32 452 72 HOH HOH . H 5 HOH A 33 453 73 HOH HOH . H 5 HOH A 34 454 74 HOH HOH . H 5 HOH A 35 455 75 HOH HOH . H 5 HOH A 36 456 77 HOH HOH . H 5 HOH A 37 457 79 HOH HOH . H 5 HOH A 38 458 80 HOH HOH . H 5 HOH A 39 459 81 HOH HOH . H 5 HOH A 40 460 82 HOH HOH . H 5 HOH A 41 461 83 HOH HOH . H 5 HOH A 42 462 89 HOH HOH . H 5 HOH A 43 463 93 HOH HOH . H 5 HOH A 44 464 95 HOH HOH . H 5 HOH A 45 465 96 HOH HOH . H 5 HOH A 46 466 98 HOH HOH . H 5 HOH A 47 467 99 HOH HOH . H 5 HOH A 48 468 101 HOH HOH . H 5 HOH A 49 469 105 HOH HOH . H 5 HOH A 50 470 108 HOH HOH . H 5 HOH A 51 471 111 HOH HOH . H 5 HOH A 52 472 116 HOH HOH . H 5 HOH A 53 473 117 HOH HOH . H 5 HOH A 54 474 118 HOH HOH . H 5 HOH A 55 475 121 HOH HOH . H 5 HOH A 56 476 122 HOH HOH . H 5 HOH A 57 477 123 HOH HOH . H 5 HOH A 58 478 125 HOH HOH . H 5 HOH A 59 479 127 HOH HOH . H 5 HOH A 60 480 130 HOH HOH . H 5 HOH A 61 481 131 HOH HOH . H 5 HOH A 62 482 133 HOH HOH . H 5 HOH A 63 483 135 HOH HOH . H 5 HOH A 64 484 136 HOH HOH . H 5 HOH A 65 485 139 HOH HOH . H 5 HOH A 66 486 141 HOH HOH . H 5 HOH A 67 487 144 HOH HOH . H 5 HOH A 68 488 145 HOH HOH . H 5 HOH A 69 489 146 HOH HOH . I 5 HOH B 1 431 3 HOH HOH . I 5 HOH B 2 432 4 HOH HOH . I 5 HOH B 3 433 6 HOH HOH . I 5 HOH B 4 434 7 HOH HOH . I 5 HOH B 5 435 9 HOH HOH . I 5 HOH B 6 436 11 HOH HOH . I 5 HOH B 7 437 12 HOH HOH . I 5 HOH B 8 438 13 HOH HOH . I 5 HOH B 9 439 14 HOH HOH . I 5 HOH B 10 440 15 HOH HOH . I 5 HOH B 11 441 18 HOH HOH . I 5 HOH B 12 442 19 HOH HOH . I 5 HOH B 13 443 20 HOH HOH . I 5 HOH B 14 444 23 HOH HOH . I 5 HOH B 15 445 24 HOH HOH . I 5 HOH B 16 446 25 HOH HOH . I 5 HOH B 17 447 28 HOH HOH . I 5 HOH B 18 448 30 HOH HOH . I 5 HOH B 19 449 32 HOH HOH . I 5 HOH B 20 450 33 HOH HOH . I 5 HOH B 21 451 34 HOH HOH . I 5 HOH B 22 452 36 HOH HOH . I 5 HOH B 23 453 40 HOH HOH . I 5 HOH B 24 454 41 HOH HOH . I 5 HOH B 25 455 42 HOH HOH . I 5 HOH B 26 456 43 HOH HOH . I 5 HOH B 27 457 44 HOH HOH . I 5 HOH B 28 458 46 HOH HOH . I 5 HOH B 29 459 49 HOH HOH . I 5 HOH B 30 460 50 HOH HOH . I 5 HOH B 31 461 51 HOH HOH . I 5 HOH B 32 462 52 HOH HOH . I 5 HOH B 33 463 55 HOH HOH . I 5 HOH B 34 464 57 HOH HOH . I 5 HOH B 35 465 60 HOH HOH . I 5 HOH B 36 466 65 HOH HOH . I 5 HOH B 37 467 67 HOH HOH . I 5 HOH B 38 468 68 HOH HOH . I 5 HOH B 39 469 69 HOH HOH . I 5 HOH B 40 470 70 HOH HOH . I 5 HOH B 41 471 76 HOH HOH . I 5 HOH B 42 472 78 HOH HOH . I 5 HOH B 43 473 84 HOH HOH . I 5 HOH B 44 474 85 HOH HOH . I 5 HOH B 45 475 86 HOH HOH . I 5 HOH B 46 476 87 HOH HOH . I 5 HOH B 47 477 88 HOH HOH . I 5 HOH B 48 478 90 HOH HOH . I 5 HOH B 49 479 91 HOH HOH . I 5 HOH B 50 480 92 HOH HOH . I 5 HOH B 51 481 94 HOH HOH . I 5 HOH B 52 482 97 HOH HOH . I 5 HOH B 53 483 100 HOH HOH . I 5 HOH B 54 484 102 HOH HOH . I 5 HOH B 55 485 103 HOH HOH . I 5 HOH B 56 486 104 HOH HOH . I 5 HOH B 57 487 106 HOH HOH . I 5 HOH B 58 488 107 HOH HOH . I 5 HOH B 59 489 109 HOH HOH . I 5 HOH B 60 490 110 HOH HOH . I 5 HOH B 61 491 112 HOH HOH . I 5 HOH B 62 492 113 HOH HOH . I 5 HOH B 63 493 114 HOH HOH . I 5 HOH B 64 494 115 HOH HOH . I 5 HOH B 65 495 119 HOH HOH . I 5 HOH B 66 496 120 HOH HOH . I 5 HOH B 67 497 124 HOH HOH . I 5 HOH B 68 498 126 HOH HOH . I 5 HOH B 69 499 128 HOH HOH . I 5 HOH B 70 500 129 HOH HOH . I 5 HOH B 71 501 132 HOH HOH . I 5 HOH B 72 502 134 HOH HOH . I 5 HOH B 73 503 137 HOH HOH . I 5 HOH B 74 504 138 HOH HOH . I 5 HOH B 75 505 140 HOH HOH . I 5 HOH B 76 506 142 HOH HOH . I 5 HOH B 77 507 143 HOH HOH . I 5 HOH B 78 508 147 HOH HOH . I 5 HOH B 79 509 148 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . F 2 -12.592 13.513 -10.63 1 22.04 ? N1 PLP 410 B 1 HETATM 2 C C2 PLP . . . F 2 -13.432 12.495 -10.283 1 23.06 ? C2 PLP 410 B 1 HETATM 3 C C2A PLP . . . F 2 -14.263 11.802 -11.391 1 21.92 ? C2A PLP 410 B 1 HETATM 4 C C3 PLP . . . F 2 -13.53 12.115 -8.951 1 25.75 ? C3 PLP 410 B 1 HETATM 5 O O3 PLP . . . F 2 -14.368 11.05 -8.599 1 26.58 ? O3 PLP 410 B 1 HETATM 6 C C4 PLP . . . F 2 -12.768 12.782 -7.964 1 25.08 ? C4 PLP 410 B 1 HETATM 7 C C4A PLP . . . F 2 -12.952 12.36 -6.496 1 26.77 ? C4A PLP 410 B 1 HETATM 8 C C5 PLP . . . F 2 -11.913 13.839 -8.365 1 25.54 ? C5 PLP 410 B 1 HETATM 9 C C6 PLP . . . F 2 -11.849 14.171 -9.702 1 22.16 ? C6 PLP 410 B 1 HETATM 10 C C5A PLP . . . F 2 -10.994 14.655 -7.406 1 22.84 ? C5A PLP 410 B 1 HETATM 11 O O4P PLP . . . F 2 -11.654 15.415 -6.39 1 26.58 ? O4P PLP 410 B 1 HETATM 12 P P PLP . . . F 2 -10.842 15.66 -5.045 1 24.55 ? P PLP 410 B 1 HETATM 13 O O1P PLP . . . F 2 -10.373 14.345 -4.484 1 25.6 ? O1P PLP 410 B 1 HETATM 14 O O2P PLP . . . F 2 -12.007 16.217 -4.162 1 24.37 ? O2P PLP 410 B 1 HETATM 15 O O3P PLP . . . F 2 -9.879 16.73 -5.317 1 25.18 ? O3P PLP 410 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #