data_2COL
#
_model_server_result.job_id            dbnxA9XHKzfxVQCk2A1HiQ 
_model_server_result.datetime_utc      '2024-10-12 15:30:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2col 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":893}' 
#
_entry.id    2COL 
#
_exptl.entry_id    2COL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              175.959 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PYROPHOSPHATE 2-' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2COL 
_cell.length_a            79.613 
_cell.length_b            79.613 
_cell.length_c            139.465 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2COL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 182 A ASP 188 1_555 C MG MG . A MG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.816 ? 
metalc ? metalc2 A OD2 ASP 182 A ASP 188 1_555 C MG MG . A MG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc3 A OD2 ASP 182 A ASP 188 1_555 D MG MG . A MG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? 
metalc ? metalc4 A O ILE 183 A ILE 189 1_555 D MG MG . A MG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.061 ? 
metalc ? metalc5 A OD1 ASP 184 A ASP 190 1_555 C MG MG . A MG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc6 A N GLN 291 A GLN 297 1_555 D MG MG . A MG 908 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? 
metalc ? metalc7 A ND1 HIS 292 A HIS 298 1_555 C MG MG . A MG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.027 ? 
metalc ? metalc8 A NE2 HIS 292 A HIS 298 1_555 C MG MG . A MG 907 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.139 ? 
metalc ? metalc9 C MG MG . A MG 907 1_555 H O HOH . A HOH 964 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
metalc ? metalc10 B OD2 ASP 15 B ASP 93 1_555 G CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc11 B OD1 ASP 17 B ASP 95 1_555 G CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc12 B ND2 ASN 19 B ASN 97 1_555 G CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? 
metalc ? metalc13 B O ASN 19 B ASN 97 1_555 G CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.306 ? 
metalc ? metalc14 B O TYR 21 B TYR 99 1_555 G CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? 
metalc ? metalc15 B OE1 GLU 26 B GLU 104 1_555 G CA CA . B CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc16 B OD2 ASP 51 B ASP 129 1_555 F CA CA . B CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc17 B OD1 ASP 53 B ASP 131 1_555 F CA CA . B CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.548 ? 
metalc ? metalc18 B OD2 ASP 53 B ASP 131 1_555 F CA CA . B CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.994 ? 
metalc ? metalc19 B OD1 ASP 55 B ASP 133 1_555 F CA CA . B CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc20 B O GLN 57 B GLN 135 1_555 F CA CA . B CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc21 B OE1 GLU 62 B GLU 140 1_555 F CA CA . B CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? 
metalc ? metalc22 B OE2 GLU 62 B GLU 140 1_555 F CA CA . B CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.05 ? 
metalc ? metalc23 F CA CA . B CA 800 1_555 I O HOH . B HOH 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? 
#
_chem_comp.formula           'H2 O7 P2 -2' 
_chem_comp.formula_weight    175.959 
_chem_comp.id                POP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PYROPHOSPHATE 2-' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O1 POP doub 247 n n 
P1 O2 POP sing 248 n n 
P1 O3 POP sing 249 n n 
P1 O POP sing 250 n n 
O2 HO2 POP sing 251 n n 
O P2 POP sing 252 n n 
P2 O4 POP doub 253 n n 
P2 O5 POP sing 254 n n 
P2 O6 POP sing 255 n n 
O5 HO5 POP sing 256 n n 
#
_atom_sites.entry_id                     2COL 
_atom_sites.fract_transf_matrix[1][1]    0.012561 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012561 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00717 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MG A 1 907 907 MG MG2 . 
D 3 MG A 1 908 908 MG MG2 . 
E 4 POP A 1 893 893 POP POP . 
F 5 CA B 1 800 800 CA CA2 . 
G 5 CA B 1 801 801 CA CA2 . 
H 6 HOH A 1 909 1 HOH TIP . 
H 6 HOH A 2 910 2 HOH TIP . 
H 6 HOH A 3 911 3 HOH TIP . 
H 6 HOH A 4 912 4 HOH TIP . 
H 6 HOH A 5 913 5 HOH TIP . 
H 6 HOH A 6 914 6 HOH TIP . 
H 6 HOH A 7 915 7 HOH TIP . 
H 6 HOH A 8 916 8 HOH TIP . 
H 6 HOH A 9 917 9 HOH TIP . 
H 6 HOH A 10 918 10 HOH TIP . 
H 6 HOH A 11 919 11 HOH TIP . 
H 6 HOH A 12 920 12 HOH TIP . 
H 6 HOH A 13 921 13 HOH TIP . 
H 6 HOH A 14 922 14 HOH TIP . 
H 6 HOH A 15 923 15 HOH TIP . 
H 6 HOH A 16 924 17 HOH TIP . 
H 6 HOH A 17 925 19 HOH TIP . 
H 6 HOH A 18 926 20 HOH TIP . 
H 6 HOH A 19 927 22 HOH TIP . 
H 6 HOH A 20 928 23 HOH TIP . 
H 6 HOH A 21 929 24 HOH TIP . 
H 6 HOH A 22 930 25 HOH TIP . 
H 6 HOH A 23 931 26 HOH TIP . 
H 6 HOH A 24 932 27 HOH TIP . 
H 6 HOH A 25 933 28 HOH TIP . 
H 6 HOH A 26 934 31 HOH TIP . 
H 6 HOH A 27 935 33 HOH TIP . 
H 6 HOH A 28 936 34 HOH TIP . 
H 6 HOH A 29 937 36 HOH TIP . 
H 6 HOH A 30 938 37 HOH TIP . 
H 6 HOH A 31 939 38 HOH TIP . 
H 6 HOH A 32 940 39 HOH TIP . 
H 6 HOH A 33 941 40 HOH TIP . 
H 6 HOH A 34 942 41 HOH TIP . 
H 6 HOH A 35 943 42 HOH TIP . 
H 6 HOH A 36 944 43 HOH TIP . 
H 6 HOH A 37 945 44 HOH TIP . 
H 6 HOH A 38 946 47 HOH TIP . 
H 6 HOH A 39 947 48 HOH TIP . 
H 6 HOH A 40 948 49 HOH TIP . 
H 6 HOH A 41 949 51 HOH TIP . 
H 6 HOH A 42 950 52 HOH TIP . 
H 6 HOH A 43 951 53 HOH TIP . 
H 6 HOH A 44 952 54 HOH TIP . 
H 6 HOH A 45 953 56 HOH TIP . 
H 6 HOH A 46 954 57 HOH TIP . 
H 6 HOH A 47 955 58 HOH TIP . 
H 6 HOH A 48 956 60 HOH TIP . 
H 6 HOH A 49 957 61 HOH TIP . 
H 6 HOH A 50 958 63 HOH TIP . 
H 6 HOH A 51 959 64 HOH TIP . 
H 6 HOH A 52 960 65 HOH TIP . 
H 6 HOH A 53 961 66 HOH TIP . 
H 6 HOH A 54 962 68 HOH TIP . 
H 6 HOH A 55 963 69 HOH TIP . 
H 6 HOH A 56 964 70 HOH TIP . 
H 6 HOH A 57 965 71 HOH TIP . 
H 6 HOH A 58 966 72 HOH TIP . 
H 6 HOH A 59 967 73 HOH TIP . 
H 6 HOH A 60 968 75 HOH TIP . 
H 6 HOH A 61 969 77 HOH TIP . 
H 6 HOH A 62 970 78 HOH TIP . 
H 6 HOH A 63 971 79 HOH TIP . 
H 6 HOH A 64 972 80 HOH TIP . 
H 6 HOH A 65 973 81 HOH TIP . 
H 6 HOH A 66 974 82 HOH TIP . 
H 6 HOH A 67 975 83 HOH TIP . 
H 6 HOH A 68 976 84 HOH TIP . 
H 6 HOH A 69 977 85 HOH TIP . 
H 6 HOH A 70 978 87 HOH TIP . 
H 6 HOH A 71 979 88 HOH TIP . 
H 6 HOH A 72 980 89 HOH TIP . 
H 6 HOH A 73 981 90 HOH TIP . 
H 6 HOH A 74 982 91 HOH TIP . 
H 6 HOH A 75 983 92 HOH TIP . 
H 6 HOH A 76 984 93 HOH TIP . 
H 6 HOH A 77 985 95 HOH TIP . 
H 6 HOH A 78 986 96 HOH TIP . 
H 6 HOH A 79 987 97 HOH TIP . 
H 6 HOH A 80 988 98 HOH TIP . 
H 6 HOH A 81 989 99 HOH TIP . 
H 6 HOH A 82 990 100 HOH TIP . 
H 6 HOH A 83 991 101 HOH TIP . 
H 6 HOH A 84 992 102 HOH TIP . 
H 6 HOH A 85 993 104 HOH TIP . 
H 6 HOH A 86 994 106 HOH TIP . 
H 6 HOH A 87 995 107 HOH TIP . 
H 6 HOH A 88 996 108 HOH TIP . 
H 6 HOH A 89 997 109 HOH TIP . 
H 6 HOH A 90 998 110 HOH TIP . 
H 6 HOH A 91 999 111 HOH TIP . 
H 6 HOH A 92 1000 112 HOH TIP . 
H 6 HOH A 93 1001 113 HOH TIP . 
H 6 HOH A 94 1002 114 HOH TIP . 
H 6 HOH A 95 1003 115 HOH TIP . 
H 6 HOH A 96 1004 116 HOH TIP . 
H 6 HOH A 97 1005 117 HOH TIP . 
H 6 HOH A 98 1006 118 HOH TIP . 
I 6 HOH B 1 802 16 HOH TIP . 
I 6 HOH B 2 803 18 HOH TIP . 
I 6 HOH B 3 804 21 HOH TIP . 
I 6 HOH B 4 805 29 HOH TIP . 
I 6 HOH B 5 806 30 HOH TIP . 
I 6 HOH B 6 807 32 HOH TIP . 
I 6 HOH B 7 808 35 HOH TIP . 
I 6 HOH B 8 809 45 HOH TIP . 
I 6 HOH B 9 810 46 HOH TIP . 
I 6 HOH B 10 811 50 HOH TIP . 
I 6 HOH B 11 812 55 HOH TIP . 
I 6 HOH B 12 813 59 HOH TIP . 
I 6 HOH B 13 814 62 HOH TIP . 
I 6 HOH B 14 815 67 HOH TIP . 
I 6 HOH B 15 816 74 HOH TIP . 
I 6 HOH B 16 817 76 HOH TIP . 
I 6 HOH B 17 818 86 HOH TIP . 
I 6 HOH B 18 819 94 HOH TIP . 
I 6 HOH B 19 820 103 HOH TIP . 
I 6 HOH B 20 821 105 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 POP . . . E 4 -2.974 44.816 72.252 1 73.15 ? P1 POP 893 A 1 
HETATM 2 O O1 POP . . . E 4 -3.621 44.818 70.861 1 72.41 ? O1 POP 893 A 1 
HETATM 3 O O2 POP . . . E 4 -2.298 43.496 72.556 1 72.72 ? O2 POP 893 A 1 
HETATM 4 O O3 POP . . . E 4 -3.996 45.139 73.362 1 72.6 ? O3 POP 893 A 1 
HETATM 5 O O POP . . . E 4 -1.796 45.97 72.22 1 72.55 ? O POP 893 A 1 
HETATM 6 P P2 POP . . . E 4 -1.507 47.428 72.867 1 72.35 ? P2 POP 893 A 1 
HETATM 7 O O4 POP . . . E 4 -0.577 48.156 71.949 1 72.09 ? O4 POP 893 A 1 
HETATM 8 O O5 POP . . . E 4 -2.741 48.313 72.763 1 71.8 ? O5 POP 893 A 1 
HETATM 9 O O6 POP . . . E 4 -1.175 47.33 74.34 1 71.75 ? O6 POP 893 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           9 
#