data_2CQZ # _model_server_result.job_id 8DmfTIU9cx19cTO7dCXRHQ _model_server_result.datetime_utc '2024-11-05 01:17:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2cqz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":605}' # _entry.id 2CQZ # _exptl.entry_id 2CQZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.78 _cell.angle_gamma 90 _cell.entry_id 2CQZ _cell.length_a 78.511 _cell.length_b 101.166 _cell.length_c 78.646 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CQZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 36 A HIS 33 1_555 G NI NI . A NI 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc2 A NE2 HIS 70 A HIS 67 1_555 G NI NI . A NI 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc3 A OD2 ASP 71 A ASP 68 1_555 G NI NI . A NI 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc4 A OD1 ASP 127 A ASP 124 1_555 G NI NI . A NI 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc5 B NE2 HIS 36 B HIS 33 1_555 H NI NI . B NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc6 B NE2 HIS 70 B HIS 67 1_555 H NI NI . B NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.396 ? metalc ? metalc7 B OD2 ASP 71 B ASP 68 1_555 H NI NI . B NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc8 B OD1 ASP 127 B ASP 124 1_555 H NI NI . B NI 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc9 C NE2 HIS 36 C HIS 33 1_555 I NI NI . C NI 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc10 C NE2 HIS 70 C HIS 67 1_555 I NI NI . C NI 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc11 C OD2 ASP 71 C ASP 68 1_555 I NI NI . C NI 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc12 C OD1 ASP 127 C ASP 124 1_555 I NI NI . C NI 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc13 D NE2 HIS 36 D HIS 33 1_555 J NI NI . D NI 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? metalc ? metalc14 D NE2 HIS 70 D HIS 67 1_555 J NI NI . D NI 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc15 D OD2 ASP 71 D ASP 68 1_555 J NI NI . D NI 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc16 D OD1 ASP 127 D ASP 124 1_555 J NI NI . D NI 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.609 ? metalc ? metalc17 E NE2 HIS 36 E HIS 33 1_555 K NI NI . E NI 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc18 E NE2 HIS 70 E HIS 67 1_555 K NI NI . E NI 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc19 E OD2 ASP 71 E ASP 68 1_555 K NI NI . E NI 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc20 E OD1 ASP 127 E ASP 124 1_555 K NI NI . E NI 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc21 F NE2 HIS 36 F HIS 33 1_555 L NI NI . F NI 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc22 F NE2 HIS 70 F HIS 67 1_555 L NI NI . F NI 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc23 F OD2 ASP 71 F ASP 68 1_555 L NI NI . F NI 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc24 F OD1 ASP 127 F ASP 124 1_555 L NI NI . F NI 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2CQZ _atom_sites.fract_transf_matrix[1][1] 0.012737 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007289 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009885 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01465 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 NI A 1 601 601 NI NI . H 2 NI B 1 602 602 NI NI . I 2 NI C 1 603 603 NI NI . J 2 NI D 1 604 604 NI NI . K 2 NI E 1 605 605 NI NI . L 2 NI F 1 606 606 NI NI . M 3 HOH A 1 602 6 HOH HOH . M 3 HOH A 2 603 7 HOH HOH . M 3 HOH A 3 604 11 HOH HOH . M 3 HOH A 4 605 16 HOH HOH . M 3 HOH A 5 606 44 HOH HOH . M 3 HOH A 6 607 47 HOH HOH . M 3 HOH A 7 608 48 HOH HOH . M 3 HOH A 8 609 55 HOH HOH . M 3 HOH A 9 610 59 HOH HOH . M 3 HOH A 10 611 63 HOH HOH . M 3 HOH A 11 612 75 HOH HOH . M 3 HOH A 12 613 81 HOH HOH . M 3 HOH A 13 614 84 HOH HOH . M 3 HOH A 14 615 86 HOH HOH . M 3 HOH A 15 616 93 HOH HOH . M 3 HOH A 16 617 102 HOH HOH . M 3 HOH A 17 618 105 HOH HOH . M 3 HOH A 18 619 107 HOH HOH . M 3 HOH A 19 620 108 HOH HOH . M 3 HOH A 20 621 110 HOH HOH . M 3 HOH A 21 622 111 HOH HOH . M 3 HOH A 22 623 112 HOH HOH . M 3 HOH A 23 624 133 HOH HOH . M 3 HOH A 24 625 151 HOH HOH . M 3 HOH A 25 626 153 HOH HOH . M 3 HOH A 26 627 154 HOH HOH . M 3 HOH A 27 628 156 HOH HOH . M 3 HOH A 28 629 163 HOH HOH . M 3 HOH A 29 630 164 HOH HOH . N 3 HOH B 1 603 9 HOH HOH . N 3 HOH B 2 604 10 HOH HOH . N 3 HOH B 3 605 20 HOH HOH . N 3 HOH B 4 606 23 HOH HOH . N 3 HOH B 5 607 26 HOH HOH . N 3 HOH B 6 608 27 HOH HOH . N 3 HOH B 7 609 29 HOH HOH . N 3 HOH B 8 610 30 HOH HOH . N 3 HOH B 9 611 45 HOH HOH . N 3 HOH B 10 612 49 HOH HOH . N 3 HOH B 11 613 60 HOH HOH . N 3 HOH B 12 614 65 HOH HOH . N 3 HOH B 13 615 68 HOH HOH . N 3 HOH B 14 616 71 HOH HOH . N 3 HOH B 15 617 92 HOH HOH . N 3 HOH B 16 618 100 HOH HOH . N 3 HOH B 17 619 113 HOH HOH . N 3 HOH B 18 620 114 HOH HOH . N 3 HOH B 19 621 116 HOH HOH . N 3 HOH B 20 622 117 HOH HOH . N 3 HOH B 21 623 118 HOH HOH . N 3 HOH B 22 624 145 HOH HOH . N 3 HOH B 23 625 158 HOH HOH . N 3 HOH B 24 626 159 HOH HOH . N 3 HOH B 25 627 161 HOH HOH . N 3 HOH B 26 628 165 HOH HOH . O 3 HOH C 1 604 17 HOH HOH . O 3 HOH C 2 605 18 HOH HOH . O 3 HOH C 3 606 22 HOH HOH . O 3 HOH C 4 607 41 HOH HOH . O 3 HOH C 5 608 51 HOH HOH . O 3 HOH C 6 609 74 HOH HOH . O 3 HOH C 7 610 77 HOH HOH . O 3 HOH C 8 611 83 HOH HOH . O 3 HOH C 9 612 87 HOH HOH . O 3 HOH C 10 613 90 HOH HOH . O 3 HOH C 11 614 103 HOH HOH . O 3 HOH C 12 615 119 HOH HOH . O 3 HOH C 13 616 120 HOH HOH . O 3 HOH C 14 617 121 HOH HOH . O 3 HOH C 15 618 122 HOH HOH . O 3 HOH C 16 619 123 HOH HOH . O 3 HOH C 17 620 124 HOH HOH . O 3 HOH C 18 621 125 HOH HOH . O 3 HOH C 19 622 126 HOH HOH . O 3 HOH C 20 623 127 HOH HOH . O 3 HOH C 21 624 129 HOH HOH . O 3 HOH C 22 625 132 HOH HOH . O 3 HOH C 23 626 152 HOH HOH . O 3 HOH C 24 627 160 HOH HOH . O 3 HOH C 25 628 162 HOH HOH . O 3 HOH C 26 629 166 HOH HOH . O 3 HOH C 27 630 167 HOH HOH . O 3 HOH C 28 631 168 HOH HOH . P 3 HOH D 1 605 12 HOH HOH . P 3 HOH D 2 606 13 HOH HOH . P 3 HOH D 3 607 14 HOH HOH . P 3 HOH D 4 608 19 HOH HOH . P 3 HOH D 5 609 21 HOH HOH . P 3 HOH D 6 610 24 HOH HOH . P 3 HOH D 7 611 32 HOH HOH . P 3 HOH D 8 612 33 HOH HOH . P 3 HOH D 9 613 42 HOH HOH . P 3 HOH D 10 614 43 HOH HOH . P 3 HOH D 11 615 46 HOH HOH . P 3 HOH D 12 616 50 HOH HOH . P 3 HOH D 13 617 58 HOH HOH . P 3 HOH D 14 618 62 HOH HOH . P 3 HOH D 15 619 66 HOH HOH . P 3 HOH D 16 620 67 HOH HOH . P 3 HOH D 17 621 79 HOH HOH . P 3 HOH D 18 622 85 HOH HOH . P 3 HOH D 19 623 89 HOH HOH . P 3 HOH D 20 624 96 HOH HOH . P 3 HOH D 21 625 97 HOH HOH . P 3 HOH D 22 626 99 HOH HOH . P 3 HOH D 23 627 128 HOH HOH . P 3 HOH D 24 628 130 HOH HOH . P 3 HOH D 25 629 131 HOH HOH . P 3 HOH D 26 630 134 HOH HOH . P 3 HOH D 27 631 135 HOH HOH . P 3 HOH D 28 632 136 HOH HOH . P 3 HOH D 29 633 137 HOH HOH . P 3 HOH D 30 634 138 HOH HOH . P 3 HOH D 31 635 140 HOH HOH . P 3 HOH D 32 636 141 HOH HOH . P 3 HOH D 33 637 142 HOH HOH . P 3 HOH D 34 638 143 HOH HOH . P 3 HOH D 35 639 155 HOH HOH . P 3 HOH D 36 640 169 HOH HOH . P 3 HOH D 37 641 170 HOH HOH . Q 3 HOH E 1 606 2 HOH HOH . Q 3 HOH E 2 607 15 HOH HOH . Q 3 HOH E 3 608 25 HOH HOH . Q 3 HOH E 4 609 28 HOH HOH . Q 3 HOH E 5 610 31 HOH HOH . Q 3 HOH E 6 611 34 HOH HOH . Q 3 HOH E 7 612 35 HOH HOH . Q 3 HOH E 8 613 39 HOH HOH . Q 3 HOH E 9 614 40 HOH HOH . Q 3 HOH E 10 615 53 HOH HOH . Q 3 HOH E 11 616 54 HOH HOH . Q 3 HOH E 12 617 56 HOH HOH . Q 3 HOH E 13 618 69 HOH HOH . Q 3 HOH E 14 619 72 HOH HOH . Q 3 HOH E 15 620 73 HOH HOH . Q 3 HOH E 16 621 76 HOH HOH . Q 3 HOH E 17 622 80 HOH HOH . Q 3 HOH E 18 623 82 HOH HOH . Q 3 HOH E 19 624 95 HOH HOH . Q 3 HOH E 20 625 101 HOH HOH . Q 3 HOH E 21 626 139 HOH HOH . Q 3 HOH E 22 627 144 HOH HOH . Q 3 HOH E 23 628 146 HOH HOH . Q 3 HOH E 24 629 171 HOH HOH . R 3 HOH F 1 607 1 HOH HOH . R 3 HOH F 2 608 3 HOH HOH . R 3 HOH F 3 609 4 HOH HOH . R 3 HOH F 4 610 5 HOH HOH . R 3 HOH F 5 611 8 HOH HOH . R 3 HOH F 6 612 36 HOH HOH . R 3 HOH F 7 613 37 HOH HOH . R 3 HOH F 8 614 38 HOH HOH . R 3 HOH F 9 615 52 HOH HOH . R 3 HOH F 10 616 57 HOH HOH . R 3 HOH F 11 617 61 HOH HOH . R 3 HOH F 12 618 64 HOH HOH . R 3 HOH F 13 619 70 HOH HOH . R 3 HOH F 14 620 78 HOH HOH . R 3 HOH F 15 621 88 HOH HOH . R 3 HOH F 16 622 91 HOH HOH . R 3 HOH F 17 623 94 HOH HOH . R 3 HOH F 18 624 98 HOH HOH . R 3 HOH F 19 625 104 HOH HOH . R 3 HOH F 20 626 106 HOH HOH . R 3 HOH F 21 627 109 HOH HOH . R 3 HOH F 22 628 115 HOH HOH . R 3 HOH F 23 629 147 HOH HOH . R 3 HOH F 24 630 148 HOH HOH . R 3 HOH F 25 631 149 HOH HOH . R 3 HOH F 26 632 150 HOH HOH . R 3 HOH F 27 633 157 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id K _atom_site.label_entity_id 2 _atom_site.Cartn_x -39.782 _atom_site.Cartn_y 48.265 _atom_site.Cartn_z 45.263 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 85.19 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 605 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 222 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #