data_2CVT # _model_server_result.job_id N39GsfR4czDnKBiV_JcnCg _model_server_result.datetime_utc '2024-12-02 03:47:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2cvt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":890}' # _entry.id 2CVT # _exptl.entry_id 2CVT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2CVT _cell.length_a 110.253 _cell.length_b 117.071 _cell.length_c 63.337 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CVT _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 117.071 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B MG MG . A MG 889 1_555 C O3G ANP . A ANP 890 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc2 B MG MG . A MG 889 1_555 C O3A ANP . A ANP 890 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2CVT _atom_sites.fract_transf_matrix[1][1] 0.00907 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008542 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015789 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 889 101 MG MG . C 3 ANP A 1 890 1 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 -11.783 44.313 26.434 1 95.14 ? PG ANP 890 A 1 HETATM 2 O O1G ANP . . . C 3 -12.538 43.791 27.636 1 95.85 ? O1G ANP 890 A 1 HETATM 3 O O2G ANP . . . C 3 -12.176 43.712 25.09 1 92.37 ? O2G ANP 890 A 1 HETATM 4 O O3G ANP . . . C 3 -10.315 44.614 26.674 1 94.23 ? O3G ANP 890 A 1 HETATM 5 P PB ANP . . . C 3 -11.998 46.821 25.343 1 101.86 ? PB ANP 890 A 1 HETATM 6 O O1B ANP . . . C 3 -11.693 45.987 24.108 1 103.72 ? O1B ANP 890 A 1 HETATM 7 O O2B ANP . . . C 3 -13.117 47.848 25.275 1 101.45 ? O2B ANP 890 A 1 HETATM 8 N N3B ANP . . . C 3 -12.396 45.779 26.478 1 98.79 ? N3B ANP 890 A 1 HETATM 9 P PA ANP . . . C 3 -9.529 48.048 24.945 1 93.31 ? PA ANP 890 A 1 HETATM 10 O O1A ANP . . . C 3 -10.214 48.663 23.765 1 91.48 ? O1A ANP 890 A 1 HETATM 11 O O2A ANP . . . C 3 -8.683 48.973 25.773 1 94.69 ? O2A ANP 890 A 1 HETATM 12 O O3A ANP . . . C 3 -10.617 47.412 25.94 1 97.09 ? O3A ANP 890 A 1 HETATM 13 O O5' ANP . . . C 3 -8.689 46.774 24.453 1 91.13 ? O5' ANP 890 A 1 HETATM 14 C C5' ANP . . . C 3 -7.599 47.008 23.567 1 89.68 ? C5' ANP 890 A 1 HETATM 15 C C4' ANP . . . C 3 -7.718 46.195 22.29 1 87.74 ? C4' ANP 890 A 1 HETATM 16 O O4' ANP . . . C 3 -9.038 46.382 21.779 1 86.81 ? O4' ANP 890 A 1 HETATM 17 C C3' ANP . . . C 3 -6.732 46.702 21.249 1 87.18 ? C3' ANP 890 A 1 HETATM 18 O O3' ANP . . . C 3 -6.086 45.603 20.577 1 84.8 ? O3' ANP 890 A 1 HETATM 19 C C2' ANP . . . C 3 -7.607 47.548 20.326 1 87.63 ? C2' ANP 890 A 1 HETATM 20 O O2' ANP . . . C 3 -7.444 47.356 18.924 1 91.05 ? O2' ANP 890 A 1 HETATM 21 C C1' ANP . . . C 3 -9.022 47.101 20.539 1 85.86 ? C1' ANP 890 A 1 HETATM 22 N N9 ANP . . . C 3 -9.956 48.263 20.442 1 85.3 ? N9 ANP 890 A 1 HETATM 23 C C8 ANP . . . C 3 -10.822 48.683 21.391 1 85.48 ? C8 ANP 890 A 1 HETATM 24 N N7 ANP . . . C 3 -11.57 49.74 21.005 1 84.13 ? N7 ANP 890 A 1 HETATM 25 C C5 ANP . . . C 3 -11.168 50.015 19.773 1 83.64 ? C5 ANP 890 A 1 HETATM 26 C C6 ANP . . . C 3 -11.562 51.018 18.798 1 84.81 ? C6 ANP 890 A 1 HETATM 27 N N6 ANP . . . C 3 -12.532 51.916 19.116 1 85 ? N6 ANP 890 A 1 HETATM 28 N N1 ANP . . . C 3 -10.92 50.973 17.604 1 85.82 ? N1 ANP 890 A 1 HETATM 29 C C2 ANP . . . C 3 -9.966 50.056 17.302 1 85.45 ? C2 ANP 890 A 1 HETATM 30 N N3 ANP . . . C 3 -9.558 49.109 18.162 1 84.76 ? N3 ANP 890 A 1 HETATM 31 C C4 ANP . . . C 3 -10.12 49.051 19.39 1 84.15 ? C4 ANP 890 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 31 #