data_2CVV # _model_server_result.job_id 9FQP6nB8mtDHlPJfjmmDuw _model_server_result.datetime_utc '2024-12-02 05:03:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2cvv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 2CVV # _exptl.entry_id 2CVV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2CVV _cell.length_a 107.866 _cell.length_b 117.593 _cell.length_c 64.884 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CVV _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 117.593 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O2A ANP . A ANP 1001 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc2 C O2B ANP . A ANP 1001 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc3 C O2G ANP . A ANP 1001 1_555 B MG MG . A MG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2CVV _atom_sites.fract_transf_matrix[1][1] 0.009271 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008504 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015412 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 2001 2001 MG MG . C 3 ANP A 1 1001 1001 ANP ANP . D 4 UDP A 1 1002 1002 UDP UDP . E 5 HOH A 1 2002 1 HOH HOH . E 5 HOH A 2 2003 2 HOH HOH . E 5 HOH A 3 2004 3 HOH HOH . E 5 HOH A 4 2005 4 HOH HOH . E 5 HOH A 5 2006 5 HOH HOH . E 5 HOH A 6 2007 6 HOH HOH . E 5 HOH A 7 2008 7 HOH HOH . E 5 HOH A 8 2009 8 HOH HOH . E 5 HOH A 9 2010 9 HOH HOH . E 5 HOH A 10 2011 10 HOH HOH . E 5 HOH A 11 2012 11 HOH HOH . E 5 HOH A 12 2013 12 HOH HOH . E 5 HOH A 13 2014 13 HOH HOH . E 5 HOH A 14 2015 14 HOH HOH . E 5 HOH A 15 2016 15 HOH HOH . E 5 HOH A 16 2017 16 HOH HOH . E 5 HOH A 17 2018 17 HOH HOH . E 5 HOH A 18 2019 18 HOH HOH . E 5 HOH A 19 2020 19 HOH HOH . E 5 HOH A 20 2021 20 HOH HOH . E 5 HOH A 21 2022 21 HOH HOH . E 5 HOH A 22 2023 22 HOH HOH . E 5 HOH A 23 2024 23 HOH HOH . E 5 HOH A 24 2025 24 HOH HOH . E 5 HOH A 25 2026 25 HOH HOH . E 5 HOH A 26 2027 26 HOH HOH . E 5 HOH A 27 2028 27 HOH HOH . E 5 HOH A 28 2029 28 HOH HOH . E 5 HOH A 29 2030 29 HOH HOH . E 5 HOH A 30 2031 30 HOH HOH . E 5 HOH A 31 2032 31 HOH HOH . E 5 HOH A 32 2033 32 HOH HOH . E 5 HOH A 33 2034 33 HOH HOH . E 5 HOH A 34 2035 34 HOH HOH . E 5 HOH A 35 2036 35 HOH HOH . E 5 HOH A 36 2037 36 HOH HOH . E 5 HOH A 37 2038 37 HOH HOH . E 5 HOH A 38 2039 38 HOH HOH . E 5 HOH A 39 2040 39 HOH HOH . E 5 HOH A 40 2041 40 HOH HOH . E 5 HOH A 41 2042 41 HOH HOH . E 5 HOH A 42 2043 42 HOH HOH . E 5 HOH A 43 2044 43 HOH HOH . E 5 HOH A 44 2045 44 HOH HOH . E 5 HOH A 45 2046 45 HOH HOH . E 5 HOH A 46 2047 46 HOH HOH . E 5 HOH A 47 2048 47 HOH HOH . E 5 HOH A 48 2049 48 HOH HOH . E 5 HOH A 49 2050 49 HOH HOH . E 5 HOH A 50 2051 50 HOH HOH . E 5 HOH A 51 2052 51 HOH HOH . E 5 HOH A 52 2053 52 HOH HOH . E 5 HOH A 53 2054 53 HOH HOH . E 5 HOH A 54 2055 54 HOH HOH . E 5 HOH A 55 2056 55 HOH HOH . E 5 HOH A 56 2057 56 HOH HOH . E 5 HOH A 57 2058 57 HOH HOH . E 5 HOH A 58 2059 58 HOH HOH . E 5 HOH A 59 2060 59 HOH HOH . E 5 HOH A 60 2061 60 HOH HOH . E 5 HOH A 61 2062 61 HOH HOH . E 5 HOH A 62 2063 62 HOH HOH . E 5 HOH A 63 2064 63 HOH HOH . E 5 HOH A 64 2065 64 HOH HOH . E 5 HOH A 65 2066 65 HOH HOH . E 5 HOH A 66 2067 66 HOH HOH . E 5 HOH A 67 2068 67 HOH HOH . E 5 HOH A 68 2069 68 HOH HOH . E 5 HOH A 69 2070 69 HOH HOH . E 5 HOH A 70 2071 70 HOH HOH . E 5 HOH A 71 2072 71 HOH HOH . E 5 HOH A 72 2073 72 HOH HOH . E 5 HOH A 73 2074 73 HOH HOH . E 5 HOH A 74 2075 74 HOH HOH . E 5 HOH A 75 2076 75 HOH HOH . E 5 HOH A 76 2077 76 HOH HOH . E 5 HOH A 77 2078 77 HOH HOH . E 5 HOH A 78 2079 78 HOH HOH . E 5 HOH A 79 2080 79 HOH HOH . E 5 HOH A 80 2081 80 HOH HOH . E 5 HOH A 81 2082 81 HOH HOH . E 5 HOH A 82 2083 82 HOH HOH . E 5 HOH A 83 2084 83 HOH HOH . E 5 HOH A 84 2085 84 HOH HOH . E 5 HOH A 85 2086 85 HOH HOH . E 5 HOH A 86 2087 86 HOH HOH . E 5 HOH A 87 2088 87 HOH HOH . E 5 HOH A 88 2089 88 HOH HOH . E 5 HOH A 89 2090 89 HOH HOH . E 5 HOH A 90 2091 90 HOH HOH . E 5 HOH A 91 2092 91 HOH HOH . E 5 HOH A 92 2093 92 HOH HOH . E 5 HOH A 93 2094 93 HOH HOH . E 5 HOH A 94 2095 94 HOH HOH . E 5 HOH A 95 2096 95 HOH HOH . E 5 HOH A 96 2097 96 HOH HOH . E 5 HOH A 97 2098 97 HOH HOH . E 5 HOH A 98 2099 98 HOH HOH . E 5 HOH A 99 2100 99 HOH HOH . E 5 HOH A 100 2101 100 HOH HOH . E 5 HOH A 101 2102 101 HOH HOH . E 5 HOH A 102 2103 102 HOH HOH . E 5 HOH A 103 2104 103 HOH HOH . E 5 HOH A 104 2105 104 HOH HOH . E 5 HOH A 105 2106 105 HOH HOH . E 5 HOH A 106 2107 106 HOH HOH . E 5 HOH A 107 2108 107 HOH HOH . E 5 HOH A 108 2109 108 HOH HOH . E 5 HOH A 109 2110 109 HOH HOH . E 5 HOH A 110 2111 110 HOH HOH . E 5 HOH A 111 2112 111 HOH HOH . E 5 HOH A 112 2113 112 HOH HOH . E 5 HOH A 113 2114 113 HOH HOH . E 5 HOH A 114 2115 114 HOH HOH . E 5 HOH A 115 2116 115 HOH HOH . E 5 HOH A 116 2117 116 HOH HOH . E 5 HOH A 117 2118 117 HOH HOH . E 5 HOH A 118 2119 118 HOH HOH . E 5 HOH A 119 2120 119 HOH HOH . E 5 HOH A 120 2121 120 HOH HOH . E 5 HOH A 121 2122 121 HOH HOH . E 5 HOH A 122 2123 122 HOH HOH . E 5 HOH A 123 2124 123 HOH HOH . E 5 HOH A 124 2125 124 HOH HOH . E 5 HOH A 125 2126 125 HOH HOH . E 5 HOH A 126 2127 126 HOH HOH . E 5 HOH A 127 2128 127 HOH HOH . E 5 HOH A 128 2129 128 HOH HOH . E 5 HOH A 129 2130 129 HOH HOH . E 5 HOH A 130 2131 130 HOH HOH . E 5 HOH A 131 2132 131 HOH HOH . E 5 HOH A 132 2133 132 HOH HOH . E 5 HOH A 133 2134 133 HOH HOH . E 5 HOH A 134 2135 134 HOH HOH . E 5 HOH A 135 2136 135 HOH HOH . E 5 HOH A 136 2137 136 HOH HOH . E 5 HOH A 137 2138 137 HOH HOH . E 5 HOH A 138 2139 138 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 3 -12.293 44.972 26.613 1 21.14 ? PG ANP 1001 A 1 HETATM 2 O O1G ANP . . . C 3 -12.783 44.126 25.466 1 19.25 ? O1G ANP 1001 A 1 HETATM 3 O O2G ANP . . . C 3 -10.815 45.307 26.608 1 19.96 ? O2G ANP 1001 A 1 HETATM 4 O O3G ANP . . . C 3 -12.791 44.52 27.98 1 20.84 ? O3G ANP 1001 A 1 HETATM 5 P PB ANP . . . C 3 -12.293 47.847 26.582 1 17.5 ? PB ANP 1001 A 1 HETATM 6 O O1B ANP . . . C 3 -13.302 48.882 26.183 1 19.51 ? O1B ANP 1001 A 1 HETATM 7 O O2B ANP . . . C 3 -11.647 47.989 27.933 1 16.59 ? O2B ANP 1001 A 1 HETATM 8 N N3B ANP . . . C 3 -12.996 46.401 26.291 1 19.67 ? N3B ANP 1001 A 1 HETATM 9 P PA ANP . . . C 3 -9.74 48.391 25.543 1 19.04 ? PA ANP 1001 A 1 HETATM 10 O O1A ANP . . . C 3 -9.733 49.9 25.473 1 17.83 ? O1A ANP 1001 A 1 HETATM 11 O O2A ANP . . . C 3 -9.047 47.589 26.637 1 20.17 ? O2A ANP 1001 A 1 HETATM 12 O O3A ANP . . . C 3 -11.205 47.783 25.425 1 18.11 ? O3A ANP 1001 A 1 HETATM 13 O O5' ANP . . . C 3 -9.27 47.926 24.085 1 19.8 ? O5' ANP 1001 A 1 HETATM 14 C C5' ANP . . . C 3 -9.24 46.542 23.788 1 18.82 ? C5' ANP 1001 A 1 HETATM 15 C C4' ANP . . . C 3 -8.644 46.324 22.413 1 18.99 ? C4' ANP 1001 A 1 HETATM 16 O O4' ANP . . . C 3 -9.591 46.758 21.438 1 19.58 ? O4' ANP 1001 A 1 HETATM 17 C C3' ANP . . . C 3 -7.361 47.094 22.216 1 19.51 ? C3' ANP 1001 A 1 HETATM 18 O O3' ANP . . . C 3 -6.38 46.284 21.518 1 16.72 ? O3' ANP 1001 A 1 HETATM 19 C C2' ANP . . . C 3 -7.859 48.276 21.405 1 20.1 ? C2' ANP 1001 A 1 HETATM 20 O O2' ANP . . . C 3 -6.862 48.578 20.453 1 26.07 ? O2' ANP 1001 A 1 HETATM 21 C C1' ANP . . . C 3 -9.119 47.851 20.664 1 19.16 ? C1' ANP 1001 A 1 HETATM 22 N N9 ANP . . . C 3 -10.145 48.938 20.649 1 19.09 ? N9 ANP 1001 A 1 HETATM 23 C C8 ANP . . . C 3 -10.989 49.224 21.673 1 19.7 ? C8 ANP 1001 A 1 HETATM 24 N N7 ANP . . . C 3 -11.825 50.266 21.381 1 18.79 ? N7 ANP 1001 A 1 HETATM 25 C C5 ANP . . . C 3 -11.521 50.695 20.139 1 17.65 ? C5 ANP 1001 A 1 HETATM 26 C C6 ANP . . . C 3 -12.021 51.767 19.225 1 16.38 ? C6 ANP 1001 A 1 HETATM 27 N N6 ANP . . . C 3 -13.017 52.636 19.56 1 14.27 ? N6 ANP 1001 A 1 HETATM 28 N N1 ANP . . . C 3 -11.425 51.838 18.017 1 16.01 ? N1 ANP 1001 A 1 HETATM 29 C C2 ANP . . . C 3 -10.428 51.012 17.645 1 15.7 ? C2 ANP 1001 A 1 HETATM 30 N N3 ANP . . . C 3 -9.929 50.027 18.41 1 16.38 ? N3 ANP 1001 A 1 HETATM 31 C C4 ANP . . . C 3 -10.42 49.809 19.656 1 18.19 ? C4 ANP 1001 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #