data_2CWW # _model_server_result.job_id CtLa-dMozEVETFHV32DQrw _model_server_result.datetime_utc '2025-07-07 21:53:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2cww # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":501}' # _entry.id 2CWW # _exptl.entry_id 2CWW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.93 _cell.angle_gamma 90 _cell.entry_id 2CWW _cell.length_a 137.805 _cell.length_b 46.065 _cell.length_c 134.127 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CWW _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1,2 B,F,H 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 92.084883 0 126.094104 3 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 137.805 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 297 n n N HN1 SAH sing 298 n n N HN2 SAH sing 299 n n CA CB SAH sing 300 n n CA C SAH sing 301 n n CA HA SAH sing 302 n n CB CG SAH sing 303 n n CB HB1 SAH sing 304 n n CB HB2 SAH sing 305 n n CG SD SAH sing 306 n n CG HG1 SAH sing 307 n n CG HG2 SAH sing 308 n n SD C5' SAH sing 309 n n C O SAH doub 310 n n C OXT SAH sing 311 n n OXT HXT SAH sing 312 n n C5' C4' SAH sing 313 n n C5' "H5'1" SAH sing 314 n n C5' "H5'2" SAH sing 315 n n C4' O4' SAH sing 316 n n C4' C3' SAH sing 317 n n C4' H4' SAH sing 318 n n O4' C1' SAH sing 319 n n C3' O3' SAH sing 320 n n C3' C2' SAH sing 321 n n C3' H3' SAH sing 322 n n O3' HO3' SAH sing 323 n n C2' O2' SAH sing 324 n n C2' C1' SAH sing 325 n n C2' H2' SAH sing 326 n n O2' HO2' SAH sing 327 n n C1' N9 SAH sing 328 n n C1' H1' SAH sing 329 n n N9 C8 SAH sing 330 n y N9 C4 SAH sing 331 n y C8 N7 SAH doub 332 n y C8 H8 SAH sing 333 n n N7 C5 SAH sing 334 n y C5 C6 SAH sing 335 n y C5 C4 SAH doub 336 n y C6 N6 SAH sing 337 n n C6 N1 SAH doub 338 n y N6 HN61 SAH sing 339 n n N6 HN62 SAH sing 340 n n N1 C2 SAH sing 341 n y C2 N3 SAH doub 342 n y C2 H2 SAH sing 343 n n N3 C4 SAH sing 344 n y # _atom_sites.entry_id 2CWW _atom_sites.fract_transf_matrix[1][1] 0.007257 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002631 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021708 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007931 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 500 500 SAH SAH . D 3 ACY A 1 400 400 ACY ACY . E 4 GOL A 1 401 401 GOL GOL . F 2 SAH B 1 501 501 SAH SAH . G 5 HOH A 1 501 1 HOH HOH . G 5 HOH A 2 502 2 HOH HOH . G 5 HOH A 3 503 4 HOH HOH . G 5 HOH A 4 504 7 HOH HOH . G 5 HOH A 5 505 8 HOH HOH . G 5 HOH A 6 506 9 HOH HOH . G 5 HOH A 7 507 14 HOH HOH . G 5 HOH A 8 508 15 HOH HOH . G 5 HOH A 9 509 16 HOH HOH . G 5 HOH A 10 510 17 HOH HOH . G 5 HOH A 11 511 19 HOH HOH . G 5 HOH A 12 512 20 HOH HOH . G 5 HOH A 13 513 21 HOH HOH . G 5 HOH A 14 514 23 HOH HOH . G 5 HOH A 15 515 24 HOH HOH . G 5 HOH A 16 516 25 HOH HOH . G 5 HOH A 17 517 26 HOH HOH . G 5 HOH A 18 518 28 HOH HOH . G 5 HOH A 19 519 29 HOH HOH . G 5 HOH A 20 520 32 HOH HOH . H 5 HOH B 1 502 3 HOH HOH . H 5 HOH B 2 503 5 HOH HOH . H 5 HOH B 3 504 6 HOH HOH . H 5 HOH B 4 505 10 HOH HOH . H 5 HOH B 5 506 11 HOH HOH . H 5 HOH B 6 507 12 HOH HOH . H 5 HOH B 7 508 13 HOH HOH . H 5 HOH B 8 509 18 HOH HOH . H 5 HOH B 9 510 22 HOH HOH . H 5 HOH B 10 511 27 HOH HOH . H 5 HOH B 11 512 30 HOH HOH . H 5 HOH B 12 513 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . F 2 73.04 28.986 18.872 1 61.58 ? N SAH 501 B 1 HETATM 2 C CA SAH . . . F 2 71.846 28.841 19.74 1 61.78 ? CA SAH 501 B 1 HETATM 3 C CB SAH . . . F 2 71.043 30.144 19.761 1 63.4 ? CB SAH 501 B 1 HETATM 4 C CG SAH . . . F 2 71.762 31.218 20.568 1 65.5 ? CG SAH 501 B 1 HETATM 5 S SD SAH . . . F 2 70.508 32.347 21.234 1 71.09 ? SD SAH 501 B 1 HETATM 6 C C SAH . . . F 2 70.955 27.713 19.234 1 61.73 ? C SAH 501 B 1 HETATM 7 O O SAH . . . F 2 71.041 27.335 18.082 1 60.65 ? O SAH 501 B 1 HETATM 8 O OXT SAH . . . F 2 70.06 27.125 20.064 1 62.35 ? OXT SAH 501 B 1 HETATM 9 C C5' SAH . . . F 2 71.505 33.833 21.587 1 72.13 ? C5' SAH 501 B 1 HETATM 10 C C4' SAH . . . F 2 72.441 33.587 22.787 1 74.4 ? C4' SAH 501 B 1 HETATM 11 O O4' SAH . . . F 2 73.354 34.695 22.937 1 74.62 ? O4' SAH 501 B 1 HETATM 12 C C3' SAH . . . F 2 71.643 33.454 24.097 1 74.59 ? C3' SAH 501 B 1 HETATM 13 O O3' SAH . . . F 2 71.844 32.149 24.681 1 78.34 ? O3' SAH 501 B 1 HETATM 14 C C2' SAH . . . F 2 72.181 34.59 24.984 1 73.54 ? C2' SAH 501 B 1 HETATM 15 O O2' SAH . . . F 2 72.232 34.205 26.364 1 74.41 ? O2' SAH 501 B 1 HETATM 16 C C1' SAH . . . F 2 73.578 34.893 24.353 1 72.91 ? C1' SAH 501 B 1 HETATM 17 N N9 SAH . . . F 2 74.019 36.294 24.588 1 71.96 ? N9 SAH 501 B 1 HETATM 18 C C8 SAH . . . F 2 73.209 37.403 24.746 1 70.48 ? C8 SAH 501 B 1 HETATM 19 N N7 SAH . . . F 2 73.934 38.474 24.932 1 70.38 ? N7 SAH 501 B 1 HETATM 20 C C5 SAH . . . F 2 75.25 38.142 24.907 1 69.3 ? C5 SAH 501 B 1 HETATM 21 C C6 SAH . . . F 2 76.469 38.864 25.05 1 69.17 ? C6 SAH 501 B 1 HETATM 22 N N6 SAH . . . F 2 76.447 40.238 25.272 1 68.55 ? N6 SAH 501 B 1 HETATM 23 N N1 SAH . . . F 2 77.642 38.189 24.967 1 67 ? N1 SAH 501 B 1 HETATM 24 C C2 SAH . . . F 2 77.675 36.863 24.756 1 67.01 ? C2 SAH 501 B 1 HETATM 25 N N3 SAH . . . F 2 76.551 36.144 24.618 1 66.48 ? N3 SAH 501 B 1 HETATM 26 C C4 SAH . . . F 2 75.332 36.733 24.685 1 69.34 ? C4 SAH 501 B 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #