data_2CX8
#
_model_server_result.job_id            F3GFtMAR09bk2mnvrRKK6A 
_model_server_result.datetime_utc      '2025-01-05 08:58:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2cx8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":400}' 
#
_entry.id    2CX8 
#
_exptl.entry_id    2CX8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          115.12 
_cell.angle_gamma         90 
_cell.entry_id            2CX8 
_cell.length_a            53.866 
_cell.length_b            77.821 
_cell.length_c            55.085 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2CX8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 112 A GLU 112 1_555 A N MSE 113 A MSE 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale2 A C MSE 113 A MSE 113 1_555 A N GLY 114 A GLY 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale3 B C GLU 112 B GLU 112 1_555 B N MSE 113 B MSE 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale4 B C MSE 113 B MSE 113 1_555 B N GLY 114 B GLY 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 280 n n 
N HN1 SAH sing 281 n n 
N HN2 SAH sing 282 n n 
CA CB SAH sing 283 n n 
CA C SAH sing 284 n n 
CA HA SAH sing 285 n n 
CB CG SAH sing 286 n n 
CB HB1 SAH sing 287 n n 
CB HB2 SAH sing 288 n n 
CG SD SAH sing 289 n n 
CG HG1 SAH sing 290 n n 
CG HG2 SAH sing 291 n n 
SD C5' SAH sing 292 n n 
C O SAH doub 293 n n 
C OXT SAH sing 294 n n 
OXT HXT SAH sing 295 n n 
C5' C4' SAH sing 296 n n 
C5' "H5'1" SAH sing 297 n n 
C5' "H5'2" SAH sing 298 n n 
C4' O4' SAH sing 299 n n 
C4' C3' SAH sing 300 n n 
C4' H4' SAH sing 301 n n 
O4' C1' SAH sing 302 n n 
C3' O3' SAH sing 303 n n 
C3' C2' SAH sing 304 n n 
C3' H3' SAH sing 305 n n 
O3' HO3' SAH sing 306 n n 
C2' O2' SAH sing 307 n n 
C2' C1' SAH sing 308 n n 
C2' H2' SAH sing 309 n n 
O2' HO2' SAH sing 310 n n 
C1' N9 SAH sing 311 n n 
C1' H1' SAH sing 312 n n 
N9 C8 SAH sing 313 n y 
N9 C4 SAH sing 314 n y 
C8 N7 SAH doub 315 n y 
C8 H8 SAH sing 316 n n 
N7 C5 SAH sing 317 n y 
C5 C6 SAH sing 318 n y 
C5 C4 SAH doub 319 n y 
C6 N6 SAH sing 320 n n 
C6 N1 SAH doub 321 n y 
N6 HN61 SAH sing 322 n n 
N6 HN62 SAH sing 323 n n 
N1 C2 SAH sing 324 n y 
C2 N3 SAH doub 325 n y 
C2 H2 SAH sing 326 n n 
N3 C4 SAH sing 327 n y 
#
_atom_sites.entry_id                     2CX8 
_atom_sites.fract_transf_matrix[1][1]    0.018565 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008706 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01285 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020051 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SAH A 1 300 300 SAH SAH . 
D 2 SAH B 1 400 400 SAH SAH . 
E 3 HOH A 1 301 5 HOH HOH . 
E 3 HOH A 2 302 6 HOH HOH . 
E 3 HOH A 3 303 7 HOH HOH . 
E 3 HOH A 4 304 8 HOH HOH . 
E 3 HOH A 5 305 9 HOH HOH . 
E 3 HOH A 6 306 10 HOH HOH . 
E 3 HOH A 7 307 12 HOH HOH . 
E 3 HOH A 8 308 13 HOH HOH . 
E 3 HOH A 9 309 14 HOH HOH . 
E 3 HOH A 10 310 15 HOH HOH . 
E 3 HOH A 11 311 16 HOH HOH . 
E 3 HOH A 12 312 17 HOH HOH . 
E 3 HOH A 13 313 18 HOH HOH . 
E 3 HOH A 14 314 19 HOH HOH . 
E 3 HOH A 15 315 22 HOH HOH . 
E 3 HOH A 16 316 23 HOH HOH . 
E 3 HOH A 17 317 25 HOH HOH . 
E 3 HOH A 18 318 26 HOH HOH . 
E 3 HOH A 19 319 27 HOH HOH . 
E 3 HOH A 20 320 28 HOH HOH . 
E 3 HOH A 21 321 29 HOH HOH . 
E 3 HOH A 22 322 30 HOH HOH . 
E 3 HOH A 23 323 32 HOH HOH . 
E 3 HOH A 24 324 33 HOH HOH . 
E 3 HOH A 25 325 35 HOH HOH . 
E 3 HOH A 26 326 37 HOH HOH . 
E 3 HOH A 27 327 38 HOH HOH . 
E 3 HOH A 28 328 39 HOH HOH . 
E 3 HOH A 29 329 40 HOH HOH . 
E 3 HOH A 30 330 42 HOH HOH . 
E 3 HOH A 31 331 44 HOH HOH . 
E 3 HOH A 32 332 45 HOH HOH . 
E 3 HOH A 33 333 46 HOH HOH . 
E 3 HOH A 34 334 47 HOH HOH . 
E 3 HOH A 35 335 50 HOH HOH . 
E 3 HOH A 36 336 51 HOH HOH . 
E 3 HOH A 37 337 53 HOH HOH . 
E 3 HOH A 38 338 55 HOH HOH . 
E 3 HOH A 39 339 56 HOH HOH . 
E 3 HOH A 40 340 57 HOH HOH . 
E 3 HOH A 41 341 61 HOH HOH . 
E 3 HOH A 42 342 62 HOH HOH . 
E 3 HOH A 43 343 63 HOH HOH . 
E 3 HOH A 44 344 66 HOH HOH . 
E 3 HOH A 45 345 67 HOH HOH . 
E 3 HOH A 46 346 69 HOH HOH . 
E 3 HOH A 47 347 73 HOH HOH . 
E 3 HOH A 48 348 74 HOH HOH . 
E 3 HOH A 49 349 75 HOH HOH . 
E 3 HOH A 50 350 76 HOH HOH . 
E 3 HOH A 51 351 77 HOH HOH . 
E 3 HOH A 52 352 83 HOH HOH . 
E 3 HOH A 53 353 84 HOH HOH . 
E 3 HOH A 54 354 85 HOH HOH . 
E 3 HOH A 55 355 92 HOH HOH . 
E 3 HOH A 56 356 94 HOH HOH . 
E 3 HOH A 57 357 95 HOH HOH . 
E 3 HOH A 58 358 97 HOH HOH . 
F 3 HOH B 1 401 1 HOH HOH . 
F 3 HOH B 2 402 2 HOH HOH . 
F 3 HOH B 3 403 3 HOH HOH . 
F 3 HOH B 4 404 4 HOH HOH . 
F 3 HOH B 5 405 11 HOH HOH . 
F 3 HOH B 6 406 20 HOH HOH . 
F 3 HOH B 7 407 21 HOH HOH . 
F 3 HOH B 8 408 24 HOH HOH . 
F 3 HOH B 9 409 31 HOH HOH . 
F 3 HOH B 10 410 34 HOH HOH . 
F 3 HOH B 11 411 36 HOH HOH . 
F 3 HOH B 12 412 41 HOH HOH . 
F 3 HOH B 13 413 43 HOH HOH . 
F 3 HOH B 14 414 48 HOH HOH . 
F 3 HOH B 15 415 49 HOH HOH . 
F 3 HOH B 16 416 52 HOH HOH . 
F 3 HOH B 17 417 54 HOH HOH . 
F 3 HOH B 18 418 58 HOH HOH . 
F 3 HOH B 19 419 59 HOH HOH . 
F 3 HOH B 20 420 60 HOH HOH . 
F 3 HOH B 21 421 64 HOH HOH . 
F 3 HOH B 22 422 65 HOH HOH . 
F 3 HOH B 23 423 68 HOH HOH . 
F 3 HOH B 24 424 70 HOH HOH . 
F 3 HOH B 25 425 71 HOH HOH . 
F 3 HOH B 26 426 72 HOH HOH . 
F 3 HOH B 27 427 78 HOH HOH . 
F 3 HOH B 28 428 79 HOH HOH . 
F 3 HOH B 29 429 80 HOH HOH . 
F 3 HOH B 30 430 81 HOH HOH . 
F 3 HOH B 31 431 82 HOH HOH . 
F 3 HOH B 32 432 86 HOH HOH . 
F 3 HOH B 33 433 87 HOH HOH . 
F 3 HOH B 34 434 88 HOH HOH . 
F 3 HOH B 35 435 89 HOH HOH . 
F 3 HOH B 36 436 90 HOH HOH . 
F 3 HOH B 37 437 91 HOH HOH . 
F 3 HOH B 38 438 93 HOH HOH . 
F 3 HOH B 39 439 96 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . D 2 8.301 3.852 -0.868 1 61.51 ? N SAH 400 B 1 
HETATM 2 C CA SAH . . . D 2 7.641 4.179 0.405 1 61.16 ? CA SAH 400 B 1 
HETATM 3 C CB SAH . . . D 2 7.942 5.631 0.787 1 58.08 ? CB SAH 400 B 1 
HETATM 4 C CG SAH . . . D 2 9.442 5.933 0.816 1 54.92 ? CG SAH 400 B 1 
HETATM 5 S SD SAH . . . D 2 10.4 5.077 2.12 1 52.66 ? SD SAH 400 B 1 
HETATM 6 C C SAH . . . D 2 6.13 3.985 0.251 1 61.67 ? C SAH 400 B 1 
HETATM 7 O O SAH . . . D 2 5.739 3.407 -0.786 1 61.83 ? O SAH 400 B 1 
HETATM 8 O OXT SAH . . . D 2 5.394 4.418 1.165 1 63.87 ? OXT SAH 400 B 1 
HETATM 9 C C5' SAH . . . D 2 12.071 5.359 1.426 1 50.97 ? C5' SAH 400 B 1 
HETATM 10 C C4' SAH . . . D 2 12.991 4.14 1.512 1 48.47 ? C4' SAH 400 B 1 
HETATM 11 O O4' SAH . . . D 2 13.385 3.823 2.858 1 45.26 ? O4' SAH 400 B 1 
HETATM 12 C C3' SAH . . . D 2 12.367 2.853 0.973 1 47.07 ? C3' SAH 400 B 1 
HETATM 13 O O3' SAH . . . D 2 12.41 2.879 -0.456 1 46.18 ? O3' SAH 400 B 1 
HETATM 14 C C2' SAH . . . D 2 13.418 1.88 1.504 1 44.91 ? C2' SAH 400 B 1 
HETATM 15 O O2' SAH . . . D 2 14.648 2.063 0.796 1 43.65 ? O2' SAH 400 B 1 
HETATM 16 C C1' SAH . . . D 2 13.573 2.398 2.937 1 39.51 ? C1' SAH 400 B 1 
HETATM 17 N N9 SAH . . . D 2 12.53 1.88 3.854 1 35.9 ? N9 SAH 400 B 1 
HETATM 18 C C8 SAH . . . D 2 11.668 2.622 4.545 1 33.15 ? C8 SAH 400 B 1 
HETATM 19 N N7 SAH . . . D 2 10.946 1.842 5.347 1 33.85 ? N7 SAH 400 B 1 
HETATM 20 C C5 SAH . . . D 2 11.35 0.588 5.166 1 31.14 ? C5 SAH 400 B 1 
HETATM 21 C C6 SAH . . . D 2 11.004 -0.639 5.721 1 31.86 ? C6 SAH 400 B 1 
HETATM 22 N N6 SAH . . . D 2 10.085 -0.708 6.68 1 26.81 ? N6 SAH 400 B 1 
HETATM 23 N N1 SAH . . . D 2 11.636 -1.748 5.307 1 29.53 ? N1 SAH 400 B 1 
HETATM 24 C C2 SAH . . . D 2 12.585 -1.692 4.388 1 33.36 ? C2 SAH 400 B 1 
HETATM 25 N N3 SAH . . . D 2 12.944 -0.541 3.845 1 34.71 ? N3 SAH 400 B 1 
HETATM 26 C C4 SAH . . . D 2 12.355 0.609 4.207 1 34.59 ? C4 SAH 400 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           26 
#