data_2CXG # _model_server_result.job_id voFtknRTywUnBI_SuxS65A _model_server_result.datetime_utc '2025-02-22 23:31:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2cxg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":695}' # _entry.id 2CXG # _exptl.entry_id 2CXG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.182 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3-TRIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2CXG _cell.length_a 120.887 _cell.length_b 111.903 _cell.length_c 65.748 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CXG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GLC GLC C1 O1 . O4 HO4 . sing 2 ? 3 2 1 G6D GLC C1 O1 . O4 HO4 . sing 3 ? 4 2 1 GLC GLC C1 O1 . O4 HO4 . sing 4 ? 4 3 2 GLC GLC C1 O1 . O4 HO4 . sing 5 ? 4 4 3 GLC GLC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC ? 690 GLC 2 n B GLC 2 B 2 GLC ? 691 GLC 3 n C GLC 1 C 1 GLC ? 693 GLC 3 n C G6D 2 C 2 G6D ? 694 GLD 2 n D GLC 1 D 1 GLC ? 698 GLC 2 n D GLC 2 D 2 GLC ? 699 GLC 4 n E GLC 1 E 1 GLC ? 701 GLC 4 n E GLC 2 E 2 GLC ? 702 GLC 4 n E GLC 3 E 3 GLC ? 703 GLC 4 n E GLC 4 E 4 GLC ? 704 GLC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 43 A CYS 43 1_555 A SG CYS 50 A CYS 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 F C4 ACI . A ACI 695 1_555 G O1 GLC . A GLC 696 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale2 F N1 ACI . A ACI 695 1_555 C C4 G6D . C G6D 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.47 ? covale ? covale3 B O4 GLC . B GLC 1 1_555 B C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 sing covale ? covale4 C O4 GLC . C GLC 1 1_555 C C1 G6D . C G6D 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 sing covale ? covale5 D O4 GLC . D GLC 1 1_555 D C1 GLC . D GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 sing covale ? covale6 E O4 GLC . E GLC 1 1_555 E C1 GLC . E GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 sing covale ? covale7 E O4 GLC . E GLC 2 1_555 E C1 GLC . E GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 sing covale ? covale8 E O4 GLC . E GLC 3 1_555 E C1 GLC . E GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 sing metalc ? metalc1 A OD1 ASP 27 A ASP 27 1_555 H CA CA . A CA 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc2 A O ASN 29 A ASN 29 1_555 H CA CA . A CA 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc3 A OD1 ASN 32 A ASN 32 1_555 H CA CA . A CA 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc4 A OD1 ASN 33 A ASN 33 1_555 H CA CA . A CA 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc5 A O GLY 51 A GLY 51 1_555 H CA CA . A CA 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc6 A OD2 ASP 53 A ASP 53 1_555 H CA CA . A CA 688 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc7 A OD1 ASN 139 A ASN 139 1_555 I CA CA . A CA 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc8 A O ILE 190 A ILE 190 1_555 I CA CA . A CA 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? metalc ? metalc9 A OD2 ASP 199 A ASP 199 1_555 I CA CA . A CA 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc10 A OD1 ASP 199 A ASP 199 1_555 I CA CA . A CA 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc11 A O HIS 233 A HIS 233 1_555 I CA CA . A CA 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc12 H CA CA . A CA 688 1_555 J O HOH . A HOH 728 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc13 I CA CA . A CA 689 1_555 J O HOH . A HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc14 I CA CA . A CA 689 1_555 J O HOH . A HOH 790 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? # _chem_comp.formula 'C7 H13 N O4' _chem_comp.formula_weight 175.182 _chem_comp.id ACI _chem_comp.mon_nstd_flag . _chem_comp.name 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3-TRIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ACI sing 1 n n C1 C7 ACI sing 2 n n C1 N1 ACI sing 3 n n C1 H1 ACI sing 4 n n C2 C3 ACI sing 5 n n C2 O2 ACI sing 6 n n C2 H2 ACI sing 7 n n C3 C4 ACI sing 8 n n C3 O3 ACI sing 9 n n C3 H3 ACI sing 10 n n C4 C5 ACI sing 11 n n C4 O4 ACI sing 12 n n C4 H4 ACI sing 13 n n C5 C6 ACI sing 14 n n C5 C7 ACI doub 15 n n C6 O6 ACI sing 16 n n C6 H61 ACI sing 17 n n C6 H62 ACI sing 18 n n C7 H7 ACI sing 19 n n N1 HN11 ACI sing 20 n n N1 HN12 ACI sing 21 n n O2 HO2 ACI sing 22 n n O3 HO3 ACI sing 23 n n O4 HO4 ACI sing 24 n n O6 HO6 ACI sing 25 n n # _atom_sites.entry_id 2CXG _atom_sites.fract_transf_matrix[1][1] 0.008272 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008936 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01521 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 ACI A 1 695 695 ACI ACI . G 6 GLC A 1 696 696 GLC GLC . H 7 CA A 1 688 688 CA CA . I 7 CA A 1 689 689 CA CA . J 8 HOH A 1 706 706 HOH HOH . J 8 HOH A 2 707 707 HOH HOH . J 8 HOH A 3 708 708 HOH HOH . J 8 HOH A 4 709 709 HOH HOH . J 8 HOH A 5 710 710 HOH HOH . J 8 HOH A 6 711 711 HOH HOH . J 8 HOH A 7 712 712 HOH HOH . J 8 HOH A 8 713 713 HOH HOH . J 8 HOH A 9 714 714 HOH HOH . J 8 HOH A 10 715 715 HOH HOH . J 8 HOH A 11 716 716 HOH HOH . J 8 HOH A 12 717 717 HOH HOH . J 8 HOH A 13 718 718 HOH HOH . J 8 HOH A 14 719 719 HOH HOH . J 8 HOH A 15 720 720 HOH HOH . J 8 HOH A 16 721 721 HOH HOH . J 8 HOH A 17 722 722 HOH HOH . J 8 HOH A 18 723 723 HOH HOH . J 8 HOH A 19 724 724 HOH HOH . J 8 HOH A 20 725 725 HOH HOH . J 8 HOH A 21 726 726 HOH HOH . J 8 HOH A 22 727 727 HOH HOH . J 8 HOH A 23 728 728 HOH HOH . J 8 HOH A 24 729 729 HOH HOH . J 8 HOH A 25 730 730 HOH HOH . J 8 HOH A 26 731 731 HOH HOH . J 8 HOH A 27 732 732 HOH HOH . J 8 HOH A 28 733 733 HOH HOH . J 8 HOH A 29 734 734 HOH HOH . J 8 HOH A 30 735 735 HOH HOH . J 8 HOH A 31 736 736 HOH HOH . J 8 HOH A 32 737 737 HOH HOH . J 8 HOH A 33 738 738 HOH HOH . J 8 HOH A 34 739 739 HOH HOH . J 8 HOH A 35 740 740 HOH HOH . J 8 HOH A 36 741 741 HOH HOH . J 8 HOH A 37 742 742 HOH HOH . J 8 HOH A 38 743 743 HOH HOH . J 8 HOH A 39 744 744 HOH HOH . J 8 HOH A 40 745 745 HOH HOH . J 8 HOH A 41 746 746 HOH HOH . J 8 HOH A 42 747 747 HOH HOH . J 8 HOH A 43 748 748 HOH HOH . J 8 HOH A 44 749 749 HOH HOH . J 8 HOH A 45 750 750 HOH HOH . J 8 HOH A 46 751 751 HOH HOH . J 8 HOH A 47 752 752 HOH HOH . J 8 HOH A 48 753 753 HOH HOH . J 8 HOH A 49 754 754 HOH HOH . J 8 HOH A 50 755 755 HOH HOH . J 8 HOH A 51 756 756 HOH HOH . J 8 HOH A 52 757 757 HOH HOH . J 8 HOH A 53 758 758 HOH HOH . J 8 HOH A 54 759 759 HOH HOH . J 8 HOH A 55 760 760 HOH HOH . J 8 HOH A 56 761 761 HOH HOH . J 8 HOH A 57 762 762 HOH HOH . J 8 HOH A 58 763 763 HOH HOH . J 8 HOH A 59 764 764 HOH HOH . J 8 HOH A 60 765 765 HOH HOH . J 8 HOH A 61 766 766 HOH HOH . J 8 HOH A 62 767 767 HOH HOH . J 8 HOH A 63 768 768 HOH HOH . J 8 HOH A 64 769 769 HOH HOH . J 8 HOH A 65 770 770 HOH HOH . J 8 HOH A 66 771 771 HOH HOH . J 8 HOH A 67 772 772 HOH HOH . J 8 HOH A 68 773 773 HOH HOH . J 8 HOH A 69 774 774 HOH HOH . J 8 HOH A 70 775 775 HOH HOH . J 8 HOH A 71 776 776 HOH HOH . J 8 HOH A 72 777 777 HOH HOH . J 8 HOH A 73 778 778 HOH HOH . J 8 HOH A 74 779 779 HOH HOH . J 8 HOH A 75 780 780 HOH HOH . J 8 HOH A 76 781 781 HOH HOH . J 8 HOH A 77 782 782 HOH HOH . J 8 HOH A 78 783 783 HOH HOH . J 8 HOH A 79 784 784 HOH HOH . J 8 HOH A 80 785 785 HOH HOH . J 8 HOH A 81 786 786 HOH HOH . J 8 HOH A 82 787 787 HOH HOH . J 8 HOH A 83 788 788 HOH HOH . J 8 HOH A 84 789 789 HOH HOH . J 8 HOH A 85 790 790 HOH HOH . J 8 HOH A 86 791 791 HOH HOH . J 8 HOH A 87 792 792 HOH HOH . J 8 HOH A 88 793 793 HOH HOH . J 8 HOH A 89 794 794 HOH HOH . J 8 HOH A 90 795 795 HOH HOH . J 8 HOH A 91 796 796 HOH HOH . J 8 HOH A 92 797 797 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ACI . . . F 5 46.162 86.014 44.153 1 13.61 ? C1 ACI 695 A 1 HETATM 2 C C2 ACI . . . F 5 44.826 85.984 43.449 1 14.71 ? C2 ACI 695 A 1 HETATM 3 C C3 ACI . . . F 5 43.869 86.861 44.187 1 16.24 ? C3 ACI 695 A 1 HETATM 4 C C4 ACI . . . F 5 43.626 86.321 45.579 1 18.27 ? C4 ACI 695 A 1 HETATM 5 C C5 ACI . . . F 5 44.807 85.917 46.234 1 15.99 ? C5 ACI 695 A 1 HETATM 6 C C6 ACI . . . F 5 44.615 84.692 47.075 1 20.22 ? C6 ACI 695 A 1 HETATM 7 C C7 ACI . . . F 5 46.032 85.754 45.541 1 14.73 ? C7 ACI 695 A 1 HETATM 8 N N1 ACI . . . F 5 46.777 87.317 43.942 1 14.45 ? N1 ACI 695 A 1 HETATM 9 O O2 ACI . . . F 5 44.971 86.423 42.107 1 17.64 ? O2 ACI 695 A 1 HETATM 10 O O3 ACI . . . F 5 42.613 86.95 43.514 1 19.18 ? O3 ACI 695 A 1 HETATM 11 O O6 ACI . . . F 5 43.894 83.655 46.411 1 24.98 ? O6 ACI 695 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #