data_2CXX # _model_server_result.job_id 9sBly2FQpWBiEeC0_XTqVg _model_server_result.datetime_utc '2024-11-01 09:35:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2cxx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":3401}' # _entry.id 2CXX # _exptl.entry_id 2CXX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2CXX _cell.length_a 75.357 _cell.length_b 75.357 _cell.length_c 79.112 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CXX _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 50 A ASP 50 1_555 A N MSE 51 A MSE 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MSE 51 A MSE 51 1_555 A N PRO 52 A PRO 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C PHE 56 A PHE 56 1_555 A N MSE 57 A MSE 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 57 A MSE 57 1_555 A N MSE 58 A MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C MSE 58 A MSE 58 1_555 A N GLY 59 A GLY 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale6 B C ASP 50 B ASP 50 1_555 B N MSE 51 B MSE 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 B C MSE 51 B MSE 51 1_555 B N PRO 52 B PRO 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale8 B C PHE 56 B PHE 56 1_555 B N MSE 57 B MSE 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale9 B C MSE 57 B MSE 57 1_555 B N MSE 58 B MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale10 B C MSE 58 B MSE 58 1_555 B N GLY 59 B GLY 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale11 C C ASP 50 C ASP 50 1_555 C N MSE 51 C MSE 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale12 C C MSE 51 C MSE 51 1_555 C N PRO 52 C PRO 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 C C PHE 56 C PHE 56 1_555 C N MSE 57 C MSE 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale14 C C MSE 57 C MSE 57 1_555 C N MSE 58 C MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale15 C C MSE 58 C MSE 58 1_555 C N GLY 59 C GLY 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 70 n n PB O2B GDP sing 71 n n PB O3B GDP sing 72 n n PB O3A GDP sing 73 n n O2B HOB2 GDP sing 74 n n O3B HOB3 GDP sing 75 n n O3A PA GDP sing 76 n n PA O1A GDP doub 77 n n PA O2A GDP sing 78 n n PA O5' GDP sing 79 n n O2A HOA2 GDP sing 80 n n O5' C5' GDP sing 81 n n C5' C4' GDP sing 82 n n C5' H5' GDP sing 83 n n C5' "H5''" GDP sing 84 n n C4' O4' GDP sing 85 n n C4' C3' GDP sing 86 n n C4' H4' GDP sing 87 n n O4' C1' GDP sing 88 n n C3' O3' GDP sing 89 n n C3' C2' GDP sing 90 n n C3' H3' GDP sing 91 n n O3' HO3' GDP sing 92 n n C2' O2' GDP sing 93 n n C2' C1' GDP sing 94 n n C2' H2' GDP sing 95 n n O2' HO2' GDP sing 96 n n C1' N9 GDP sing 97 n n C1' H1' GDP sing 98 n n N9 C8 GDP sing 99 n y N9 C4 GDP sing 100 n y C8 N7 GDP doub 101 n y C8 H8 GDP sing 102 n n N7 C5 GDP sing 103 n y C5 C6 GDP sing 104 n n C5 C4 GDP doub 105 n y C6 O6 GDP doub 106 n n C6 N1 GDP sing 107 n n N1 C2 GDP sing 108 n n N1 HN1 GDP sing 109 n n C2 N2 GDP sing 110 n n C2 N3 GDP doub 111 n n N2 HN21 GDP sing 112 n n N2 HN22 GDP sing 113 n n N3 C4 GDP sing 114 n n # _atom_sites.entry_id 2CXX _atom_sites.fract_transf_matrix[1][1] 0.01327 _atom_sites.fract_transf_matrix[1][2] 0.007662 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015323 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01264 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 GDP A 1 1401 1401 GDP GDP . E 2 GDP B 1 2401 2401 GDP GDP . F 2 GDP C 1 3401 3401 GDP GDP . G 3 HOH A 1 1402 1 HOH HOH . G 3 HOH A 2 1403 3 HOH HOH . G 3 HOH A 3 1404 7 HOH HOH . G 3 HOH A 4 1405 10 HOH HOH . G 3 HOH A 5 1406 13 HOH HOH . G 3 HOH A 6 1407 15 HOH HOH . G 3 HOH A 7 1408 25 HOH HOH . G 3 HOH A 8 1409 33 HOH HOH . G 3 HOH A 9 1410 36 HOH HOH . G 3 HOH A 10 1411 37 HOH HOH . G 3 HOH A 11 1412 40 HOH HOH . G 3 HOH A 12 1413 41 HOH HOH . G 3 HOH A 13 1414 42 HOH HOH . G 3 HOH A 14 1415 43 HOH HOH . G 3 HOH A 15 1416 46 HOH HOH . G 3 HOH A 16 1417 48 HOH HOH . G 3 HOH A 17 1418 49 HOH HOH . G 3 HOH A 18 1419 55 HOH HOH . G 3 HOH A 19 1420 56 HOH HOH . G 3 HOH A 20 1421 63 HOH HOH . G 3 HOH A 21 1422 64 HOH HOH . G 3 HOH A 22 1423 67 HOH HOH . G 3 HOH A 23 1424 68 HOH HOH . G 3 HOH A 24 1425 70 HOH HOH . G 3 HOH A 25 1426 74 HOH HOH . G 3 HOH A 26 1427 75 HOH HOH . G 3 HOH A 27 1428 80 HOH HOH . G 3 HOH A 28 1429 81 HOH HOH . G 3 HOH A 29 1430 85 HOH HOH . G 3 HOH A 30 1431 90 HOH HOH . G 3 HOH A 31 1432 98 HOH HOH . G 3 HOH A 32 1433 106 HOH HOH . G 3 HOH A 33 1434 107 HOH HOH . G 3 HOH A 34 1435 108 HOH HOH . G 3 HOH A 35 1436 109 HOH HOH . G 3 HOH A 36 1437 114 HOH HOH . G 3 HOH A 37 1438 119 HOH HOH . G 3 HOH A 38 1439 122 HOH HOH . G 3 HOH A 39 1440 123 HOH HOH . G 3 HOH A 40 1441 126 HOH HOH . G 3 HOH A 41 1442 128 HOH HOH . G 3 HOH A 42 1443 133 HOH HOH . G 3 HOH A 43 1444 135 HOH HOH . G 3 HOH A 44 1445 136 HOH HOH . G 3 HOH A 45 1446 137 HOH HOH . G 3 HOH A 46 1447 145 HOH HOH . G 3 HOH A 47 1448 146 HOH HOH . G 3 HOH A 48 1449 150 HOH HOH . G 3 HOH A 49 1450 151 HOH HOH . G 3 HOH A 50 1451 154 HOH HOH . G 3 HOH A 51 1452 166 HOH HOH . G 3 HOH A 52 1453 167 HOH HOH . G 3 HOH A 53 1454 169 HOH HOH . G 3 HOH A 54 1455 177 HOH HOH . G 3 HOH A 55 1456 178 HOH HOH . G 3 HOH A 56 1457 180 HOH HOH . G 3 HOH A 57 1458 186 HOH HOH . G 3 HOH A 58 1459 187 HOH HOH . G 3 HOH A 59 1460 189 HOH HOH . G 3 HOH A 60 1461 191 HOH HOH . G 3 HOH A 61 1462 192 HOH HOH . G 3 HOH A 62 1463 196 HOH HOH . G 3 HOH A 63 1464 199 HOH HOH . G 3 HOH A 64 1465 200 HOH HOH . G 3 HOH A 65 1466 201 HOH HOH . G 3 HOH A 66 1467 202 HOH HOH . G 3 HOH A 67 1468 204 HOH HOH . G 3 HOH A 68 1469 205 HOH HOH . G 3 HOH A 69 1470 207 HOH HOH . G 3 HOH A 70 1471 212 HOH HOH . G 3 HOH A 71 1472 214 HOH HOH . G 3 HOH A 72 1473 218 HOH HOH . G 3 HOH A 73 1474 221 HOH HOH . G 3 HOH A 74 1475 222 HOH HOH . G 3 HOH A 75 1476 224 HOH HOH . G 3 HOH A 76 1477 225 HOH HOH . G 3 HOH A 77 1478 229 HOH HOH . G 3 HOH A 78 1479 231 HOH HOH . G 3 HOH A 79 1480 232 HOH HOH . G 3 HOH A 80 1481 233 HOH HOH . G 3 HOH A 81 1482 236 HOH HOH . G 3 HOH A 82 1483 237 HOH HOH . G 3 HOH A 83 1484 240 HOH HOH . G 3 HOH A 84 1485 245 HOH HOH . G 3 HOH A 85 1486 247 HOH HOH . G 3 HOH A 86 1487 248 HOH HOH . G 3 HOH A 87 1488 249 HOH HOH . G 3 HOH A 88 1489 256 HOH HOH . G 3 HOH A 89 1490 260 HOH HOH . G 3 HOH A 90 1491 265 HOH HOH . G 3 HOH A 91 1492 267 HOH HOH . G 3 HOH A 92 1493 268 HOH HOH . G 3 HOH A 93 1494 270 HOH HOH . G 3 HOH A 94 1495 271 HOH HOH . G 3 HOH A 95 1496 272 HOH HOH . G 3 HOH A 96 1497 273 HOH HOH . G 3 HOH A 97 1498 274 HOH HOH . G 3 HOH A 98 1499 276 HOH HOH . G 3 HOH A 99 1500 278 HOH HOH . G 3 HOH A 100 1501 280 HOH HOH . G 3 HOH A 101 1502 281 HOH HOH . G 3 HOH A 102 1503 282 HOH HOH . G 3 HOH A 103 1504 286 HOH HOH . G 3 HOH A 104 1505 287 HOH HOH . G 3 HOH A 105 1506 293 HOH HOH . G 3 HOH A 106 1507 296 HOH HOH . G 3 HOH A 107 1508 298 HOH HOH . G 3 HOH A 108 1509 299 HOH HOH . G 3 HOH A 109 1510 300 HOH HOH . G 3 HOH A 110 1511 308 HOH HOH . G 3 HOH A 111 1512 311 HOH HOH . G 3 HOH A 112 1513 312 HOH HOH . G 3 HOH A 113 1514 314 HOH HOH . G 3 HOH A 114 1515 317 HOH HOH . G 3 HOH A 115 1516 324 HOH HOH . G 3 HOH A 116 1517 328 HOH HOH . G 3 HOH A 117 1518 329 HOH HOH . G 3 HOH A 118 1519 333 HOH HOH . G 3 HOH A 119 1520 336 HOH HOH . G 3 HOH A 120 1521 337 HOH HOH . G 3 HOH A 121 1522 338 HOH HOH . G 3 HOH A 122 1523 339 HOH HOH . G 3 HOH A 123 1524 345 HOH HOH . G 3 HOH A 124 1525 349 HOH HOH . G 3 HOH A 125 1526 350 HOH HOH . G 3 HOH A 126 1527 351 HOH HOH . G 3 HOH A 127 1528 354 HOH HOH . G 3 HOH A 128 1529 356 HOH HOH . G 3 HOH A 129 1530 357 HOH HOH . G 3 HOH A 130 1531 358 HOH HOH . G 3 HOH A 131 1532 362 HOH HOH . G 3 HOH A 132 1533 363 HOH HOH . G 3 HOH A 133 1534 368 HOH HOH . G 3 HOH A 134 1535 371 HOH HOH . G 3 HOH A 135 1536 374 HOH HOH . G 3 HOH A 136 1537 375 HOH HOH . G 3 HOH A 137 1538 376 HOH HOH . G 3 HOH A 138 1539 378 HOH HOH . G 3 HOH A 139 1540 380 HOH HOH . G 3 HOH A 140 1541 384 HOH HOH . G 3 HOH A 141 1542 386 HOH HOH . G 3 HOH A 142 1543 397 HOH HOH . G 3 HOH A 143 1544 399 HOH HOH . G 3 HOH A 144 1545 400 HOH HOH . G 3 HOH A 145 1546 401 HOH HOH . G 3 HOH A 146 1547 403 HOH HOH . G 3 HOH A 147 1548 411 HOH HOH . G 3 HOH A 148 1549 415 HOH HOH . G 3 HOH A 149 1550 416 HOH HOH . G 3 HOH A 150 1551 421 HOH HOH . G 3 HOH A 151 1552 422 HOH HOH . G 3 HOH A 152 1553 424 HOH HOH . G 3 HOH A 153 1554 428 HOH HOH . G 3 HOH A 154 1555 430 HOH HOH . G 3 HOH A 155 1556 431 HOH HOH . G 3 HOH A 156 1557 433 HOH HOH . G 3 HOH A 157 1558 435 HOH HOH . G 3 HOH A 158 1559 438 HOH HOH . G 3 HOH A 159 1560 440 HOH HOH . G 3 HOH A 160 1561 441 HOH HOH . G 3 HOH A 161 1562 452 HOH HOH . G 3 HOH A 162 1563 454 HOH HOH . G 3 HOH A 163 1564 459 HOH HOH . G 3 HOH A 164 1565 462 HOH HOH . G 3 HOH A 165 1566 463 HOH HOH . G 3 HOH A 166 1567 465 HOH HOH . G 3 HOH A 167 1568 467 HOH HOH . G 3 HOH A 168 1569 468 HOH HOH . G 3 HOH A 169 1570 472 HOH HOH . G 3 HOH A 170 1571 476 HOH HOH . G 3 HOH A 171 1572 480 HOH HOH . G 3 HOH A 172 1573 481 HOH HOH . G 3 HOH A 173 1574 486 HOH HOH . G 3 HOH A 174 1575 487 HOH HOH . G 3 HOH A 175 1576 488 HOH HOH . G 3 HOH A 176 1577 494 HOH HOH . G 3 HOH A 177 1578 496 HOH HOH . G 3 HOH A 178 1579 498 HOH HOH . G 3 HOH A 179 1580 507 HOH HOH . G 3 HOH A 180 1581 508 HOH HOH . G 3 HOH A 181 1582 510 HOH HOH . G 3 HOH A 182 1583 511 HOH HOH . G 3 HOH A 183 1584 512 HOH HOH . G 3 HOH A 184 1585 515 HOH HOH . G 3 HOH A 185 1586 518 HOH HOH . G 3 HOH A 186 1587 519 HOH HOH . G 3 HOH A 187 1588 521 HOH HOH . G 3 HOH A 188 1589 522 HOH HOH . G 3 HOH A 189 1590 523 HOH HOH . G 3 HOH A 190 1591 524 HOH HOH . G 3 HOH A 191 1592 528 HOH HOH . G 3 HOH A 192 1593 533 HOH HOH . G 3 HOH A 193 1594 537 HOH HOH . G 3 HOH A 194 1595 539 HOH HOH . G 3 HOH A 195 1596 541 HOH HOH . G 3 HOH A 196 1597 543 HOH HOH . G 3 HOH A 197 1598 549 HOH HOH . G 3 HOH A 198 1599 550 HOH HOH . G 3 HOH A 199 1600 555 HOH HOH . G 3 HOH A 200 1601 557 HOH HOH . G 3 HOH A 201 1602 561 HOH HOH . H 3 HOH B 1 2402 2 HOH HOH . H 3 HOH B 2 2403 4 HOH HOH . H 3 HOH B 3 2404 6 HOH HOH . H 3 HOH B 4 2405 9 HOH HOH . H 3 HOH B 5 2406 11 HOH HOH . H 3 HOH B 6 2407 14 HOH HOH . H 3 HOH B 7 2408 16 HOH HOH . H 3 HOH B 8 2409 17 HOH HOH . H 3 HOH B 9 2410 18 HOH HOH . H 3 HOH B 10 2411 19 HOH HOH . H 3 HOH B 11 2412 21 HOH HOH . H 3 HOH B 12 2413 22 HOH HOH . H 3 HOH B 13 2414 23 HOH HOH . H 3 HOH B 14 2415 24 HOH HOH . H 3 HOH B 15 2416 26 HOH HOH . H 3 HOH B 16 2417 28 HOH HOH . H 3 HOH B 17 2418 29 HOH HOH . H 3 HOH B 18 2419 30 HOH HOH . H 3 HOH B 19 2420 34 HOH HOH . H 3 HOH B 20 2421 38 HOH HOH . H 3 HOH B 21 2422 39 HOH HOH . H 3 HOH B 22 2423 45 HOH HOH . H 3 HOH B 23 2424 47 HOH HOH . H 3 HOH B 24 2425 52 HOH HOH . H 3 HOH B 25 2426 53 HOH HOH . H 3 HOH B 26 2427 58 HOH HOH . H 3 HOH B 27 2428 59 HOH HOH . H 3 HOH B 28 2429 60 HOH HOH . H 3 HOH B 29 2430 62 HOH HOH . H 3 HOH B 30 2431 65 HOH HOH . H 3 HOH B 31 2432 79 HOH HOH . H 3 HOH B 32 2433 83 HOH HOH . H 3 HOH B 33 2434 84 HOH HOH . H 3 HOH B 34 2435 88 HOH HOH . H 3 HOH B 35 2436 89 HOH HOH . H 3 HOH B 36 2437 92 HOH HOH . H 3 HOH B 37 2438 93 HOH HOH . H 3 HOH B 38 2439 94 HOH HOH . H 3 HOH B 39 2440 96 HOH HOH . H 3 HOH B 40 2441 99 HOH HOH . H 3 HOH B 41 2442 100 HOH HOH . H 3 HOH B 42 2443 103 HOH HOH . H 3 HOH B 43 2444 105 HOH HOH . H 3 HOH B 44 2445 111 HOH HOH . H 3 HOH B 45 2446 113 HOH HOH . H 3 HOH B 46 2447 115 HOH HOH . H 3 HOH B 47 2448 117 HOH HOH . H 3 HOH B 48 2449 118 HOH HOH . H 3 HOH B 49 2450 120 HOH HOH . H 3 HOH B 50 2451 121 HOH HOH . H 3 HOH B 51 2452 127 HOH HOH . H 3 HOH B 52 2453 129 HOH HOH . H 3 HOH B 53 2454 130 HOH HOH . H 3 HOH B 54 2455 131 HOH HOH . H 3 HOH B 55 2456 132 HOH HOH . H 3 HOH B 56 2457 134 HOH HOH . H 3 HOH B 57 2458 139 HOH HOH . H 3 HOH B 58 2459 141 HOH HOH . H 3 HOH B 59 2460 144 HOH HOH . H 3 HOH B 60 2461 148 HOH HOH . H 3 HOH B 61 2462 149 HOH HOH . H 3 HOH B 62 2463 152 HOH HOH . H 3 HOH B 63 2464 158 HOH HOH . H 3 HOH B 64 2465 161 HOH HOH . H 3 HOH B 65 2466 162 HOH HOH . H 3 HOH B 66 2467 164 HOH HOH . H 3 HOH B 67 2468 165 HOH HOH . H 3 HOH B 68 2469 168 HOH HOH . H 3 HOH B 69 2470 170 HOH HOH . H 3 HOH B 70 2471 172 HOH HOH . H 3 HOH B 71 2472 174 HOH HOH . H 3 HOH B 72 2473 175 HOH HOH . H 3 HOH B 73 2474 176 HOH HOH . H 3 HOH B 74 2475 181 HOH HOH . H 3 HOH B 75 2476 182 HOH HOH . H 3 HOH B 76 2477 183 HOH HOH . H 3 HOH B 77 2478 184 HOH HOH . H 3 HOH B 78 2479 188 HOH HOH . H 3 HOH B 79 2480 190 HOH HOH . H 3 HOH B 80 2481 194 HOH HOH . H 3 HOH B 81 2482 203 HOH HOH . H 3 HOH B 82 2483 206 HOH HOH . H 3 HOH B 83 2484 211 HOH HOH . H 3 HOH B 84 2485 213 HOH HOH . H 3 HOH B 85 2486 215 HOH HOH . H 3 HOH B 86 2487 217 HOH HOH . H 3 HOH B 87 2488 220 HOH HOH . H 3 HOH B 88 2489 223 HOH HOH . H 3 HOH B 89 2490 227 HOH HOH . H 3 HOH B 90 2491 228 HOH HOH . H 3 HOH B 91 2492 234 HOH HOH . H 3 HOH B 92 2493 235 HOH HOH . H 3 HOH B 93 2494 239 HOH HOH . H 3 HOH B 94 2495 241 HOH HOH . H 3 HOH B 95 2496 242 HOH HOH . H 3 HOH B 96 2497 243 HOH HOH . H 3 HOH B 97 2498 250 HOH HOH . H 3 HOH B 98 2499 251 HOH HOH . H 3 HOH B 99 2500 253 HOH HOH . H 3 HOH B 100 2501 255 HOH HOH . H 3 HOH B 101 2502 259 HOH HOH . H 3 HOH B 102 2503 262 HOH HOH . H 3 HOH B 103 2504 263 HOH HOH . H 3 HOH B 104 2505 264 HOH HOH . H 3 HOH B 105 2506 269 HOH HOH . H 3 HOH B 106 2507 277 HOH HOH . H 3 HOH B 107 2508 288 HOH HOH . H 3 HOH B 108 2509 289 HOH HOH . H 3 HOH B 109 2510 291 HOH HOH . H 3 HOH B 110 2511 294 HOH HOH . H 3 HOH B 111 2512 297 HOH HOH . H 3 HOH B 112 2513 301 HOH HOH . H 3 HOH B 113 2514 302 HOH HOH . H 3 HOH B 114 2515 303 HOH HOH . H 3 HOH B 115 2516 305 HOH HOH . H 3 HOH B 116 2517 309 HOH HOH . H 3 HOH B 117 2518 310 HOH HOH . H 3 HOH B 118 2519 313 HOH HOH . H 3 HOH B 119 2520 316 HOH HOH . H 3 HOH B 120 2521 318 HOH HOH . H 3 HOH B 121 2522 321 HOH HOH . H 3 HOH B 122 2523 322 HOH HOH . H 3 HOH B 123 2524 323 HOH HOH . H 3 HOH B 124 2525 326 HOH HOH . H 3 HOH B 125 2526 330 HOH HOH . H 3 HOH B 126 2527 335 HOH HOH . H 3 HOH B 127 2528 340 HOH HOH . H 3 HOH B 128 2529 343 HOH HOH . H 3 HOH B 129 2530 352 HOH HOH . H 3 HOH B 130 2531 355 HOH HOH . H 3 HOH B 131 2532 360 HOH HOH . H 3 HOH B 132 2533 366 HOH HOH . H 3 HOH B 133 2534 382 HOH HOH . H 3 HOH B 134 2535 389 HOH HOH . H 3 HOH B 135 2536 393 HOH HOH . H 3 HOH B 136 2537 394 HOH HOH . H 3 HOH B 137 2538 396 HOH HOH . H 3 HOH B 138 2539 402 HOH HOH . H 3 HOH B 139 2540 404 HOH HOH . H 3 HOH B 140 2541 406 HOH HOH . H 3 HOH B 141 2542 407 HOH HOH . H 3 HOH B 142 2543 408 HOH HOH . H 3 HOH B 143 2544 409 HOH HOH . H 3 HOH B 144 2545 413 HOH HOH . H 3 HOH B 145 2546 414 HOH HOH . H 3 HOH B 146 2547 417 HOH HOH . H 3 HOH B 147 2548 419 HOH HOH . H 3 HOH B 148 2549 420 HOH HOH . H 3 HOH B 149 2550 425 HOH HOH . H 3 HOH B 150 2551 429 HOH HOH . H 3 HOH B 151 2552 436 HOH HOH . H 3 HOH B 152 2553 439 HOH HOH . H 3 HOH B 153 2554 443 HOH HOH . H 3 HOH B 154 2555 444 HOH HOH . H 3 HOH B 155 2556 445 HOH HOH . H 3 HOH B 156 2557 446 HOH HOH . H 3 HOH B 157 2558 447 HOH HOH . H 3 HOH B 158 2559 449 HOH HOH . H 3 HOH B 159 2560 450 HOH HOH . H 3 HOH B 160 2561 451 HOH HOH . H 3 HOH B 161 2562 453 HOH HOH . H 3 HOH B 162 2563 455 HOH HOH . H 3 HOH B 163 2564 456 HOH HOH . H 3 HOH B 164 2565 460 HOH HOH . H 3 HOH B 165 2566 466 HOH HOH . H 3 HOH B 166 2567 469 HOH HOH . H 3 HOH B 167 2568 470 HOH HOH . H 3 HOH B 168 2569 474 HOH HOH . H 3 HOH B 169 2570 475 HOH HOH . H 3 HOH B 170 2571 479 HOH HOH . H 3 HOH B 171 2572 482 HOH HOH . H 3 HOH B 172 2573 483 HOH HOH . H 3 HOH B 173 2574 484 HOH HOH . H 3 HOH B 174 2575 489 HOH HOH . H 3 HOH B 175 2576 491 HOH HOH . H 3 HOH B 176 2577 493 HOH HOH . H 3 HOH B 177 2578 495 HOH HOH . H 3 HOH B 178 2579 497 HOH HOH . H 3 HOH B 179 2580 499 HOH HOH . H 3 HOH B 180 2581 502 HOH HOH . H 3 HOH B 181 2582 504 HOH HOH . H 3 HOH B 182 2583 505 HOH HOH . H 3 HOH B 183 2584 509 HOH HOH . H 3 HOH B 184 2585 526 HOH HOH . H 3 HOH B 185 2586 527 HOH HOH . H 3 HOH B 186 2587 529 HOH HOH . H 3 HOH B 187 2588 530 HOH HOH . H 3 HOH B 188 2589 535 HOH HOH . H 3 HOH B 189 2590 536 HOH HOH . H 3 HOH B 190 2591 538 HOH HOH . H 3 HOH B 191 2592 542 HOH HOH . H 3 HOH B 192 2593 544 HOH HOH . H 3 HOH B 193 2594 545 HOH HOH . H 3 HOH B 194 2595 548 HOH HOH . H 3 HOH B 195 2596 554 HOH HOH . H 3 HOH B 196 2597 556 HOH HOH . H 3 HOH B 197 2598 560 HOH HOH . H 3 HOH B 198 2599 562 HOH HOH . I 3 HOH C 1 3402 5 HOH HOH . I 3 HOH C 2 3403 8 HOH HOH . I 3 HOH C 3 3404 12 HOH HOH . I 3 HOH C 4 3405 20 HOH HOH . I 3 HOH C 5 3406 27 HOH HOH . I 3 HOH C 6 3407 31 HOH HOH . I 3 HOH C 7 3408 32 HOH HOH . I 3 HOH C 8 3409 35 HOH HOH . I 3 HOH C 9 3410 44 HOH HOH . I 3 HOH C 10 3411 50 HOH HOH . I 3 HOH C 11 3412 51 HOH HOH . I 3 HOH C 12 3413 54 HOH HOH . I 3 HOH C 13 3414 57 HOH HOH . I 3 HOH C 14 3415 61 HOH HOH . I 3 HOH C 15 3416 66 HOH HOH . I 3 HOH C 16 3417 69 HOH HOH . I 3 HOH C 17 3418 71 HOH HOH . I 3 HOH C 18 3419 72 HOH HOH . I 3 HOH C 19 3420 73 HOH HOH . I 3 HOH C 20 3421 76 HOH HOH . I 3 HOH C 21 3422 77 HOH HOH . I 3 HOH C 22 3423 78 HOH HOH . I 3 HOH C 23 3424 82 HOH HOH . I 3 HOH C 24 3425 86 HOH HOH . I 3 HOH C 25 3426 87 HOH HOH . I 3 HOH C 26 3427 91 HOH HOH . I 3 HOH C 27 3428 95 HOH HOH . I 3 HOH C 28 3429 97 HOH HOH . I 3 HOH C 29 3430 101 HOH HOH . I 3 HOH C 30 3431 102 HOH HOH . I 3 HOH C 31 3432 104 HOH HOH . I 3 HOH C 32 3433 110 HOH HOH . I 3 HOH C 33 3434 112 HOH HOH . I 3 HOH C 34 3435 116 HOH HOH . I 3 HOH C 35 3436 124 HOH HOH . I 3 HOH C 36 3437 125 HOH HOH . I 3 HOH C 37 3438 138 HOH HOH . I 3 HOH C 38 3439 140 HOH HOH . I 3 HOH C 39 3440 142 HOH HOH . I 3 HOH C 40 3441 143 HOH HOH . I 3 HOH C 41 3442 147 HOH HOH . I 3 HOH C 42 3443 153 HOH HOH . I 3 HOH C 43 3444 155 HOH HOH . I 3 HOH C 44 3445 156 HOH HOH . I 3 HOH C 45 3446 157 HOH HOH . I 3 HOH C 46 3447 159 HOH HOH . I 3 HOH C 47 3448 160 HOH HOH . I 3 HOH C 48 3449 163 HOH HOH . I 3 HOH C 49 3450 171 HOH HOH . I 3 HOH C 50 3451 173 HOH HOH . I 3 HOH C 51 3452 179 HOH HOH . I 3 HOH C 52 3453 185 HOH HOH . I 3 HOH C 53 3454 193 HOH HOH . I 3 HOH C 54 3455 195 HOH HOH . I 3 HOH C 55 3456 197 HOH HOH . I 3 HOH C 56 3457 198 HOH HOH . I 3 HOH C 57 3458 208 HOH HOH . I 3 HOH C 58 3459 209 HOH HOH . I 3 HOH C 59 3460 210 HOH HOH . I 3 HOH C 60 3461 216 HOH HOH . I 3 HOH C 61 3462 219 HOH HOH . I 3 HOH C 62 3463 226 HOH HOH . I 3 HOH C 63 3464 230 HOH HOH . I 3 HOH C 64 3465 238 HOH HOH . I 3 HOH C 65 3466 244 HOH HOH . I 3 HOH C 66 3467 246 HOH HOH . I 3 HOH C 67 3468 252 HOH HOH . I 3 HOH C 68 3469 254 HOH HOH . I 3 HOH C 69 3470 257 HOH HOH . I 3 HOH C 70 3471 258 HOH HOH . I 3 HOH C 71 3472 261 HOH HOH . I 3 HOH C 72 3473 266 HOH HOH . I 3 HOH C 73 3474 275 HOH HOH . I 3 HOH C 74 3475 279 HOH HOH . I 3 HOH C 75 3476 283 HOH HOH . I 3 HOH C 76 3477 284 HOH HOH . I 3 HOH C 77 3478 285 HOH HOH . I 3 HOH C 78 3479 290 HOH HOH . I 3 HOH C 79 3480 292 HOH HOH . I 3 HOH C 80 3481 295 HOH HOH . I 3 HOH C 81 3482 304 HOH HOH . I 3 HOH C 82 3483 306 HOH HOH . I 3 HOH C 83 3484 307 HOH HOH . I 3 HOH C 84 3485 315 HOH HOH . I 3 HOH C 85 3486 319 HOH HOH . I 3 HOH C 86 3487 320 HOH HOH . I 3 HOH C 87 3488 325 HOH HOH . I 3 HOH C 88 3489 327 HOH HOH . I 3 HOH C 89 3490 331 HOH HOH . I 3 HOH C 90 3491 332 HOH HOH . I 3 HOH C 91 3492 334 HOH HOH . I 3 HOH C 92 3493 341 HOH HOH . I 3 HOH C 93 3494 342 HOH HOH . I 3 HOH C 94 3495 344 HOH HOH . I 3 HOH C 95 3496 346 HOH HOH . I 3 HOH C 96 3497 347 HOH HOH . I 3 HOH C 97 3498 348 HOH HOH . I 3 HOH C 98 3499 353 HOH HOH . I 3 HOH C 99 3500 359 HOH HOH . I 3 HOH C 100 3501 361 HOH HOH . I 3 HOH C 101 3502 364 HOH HOH . I 3 HOH C 102 3503 365 HOH HOH . I 3 HOH C 103 3504 367 HOH HOH . I 3 HOH C 104 3505 369 HOH HOH . I 3 HOH C 105 3506 370 HOH HOH . I 3 HOH C 106 3507 372 HOH HOH . I 3 HOH C 107 3508 373 HOH HOH . I 3 HOH C 108 3509 377 HOH HOH . I 3 HOH C 109 3510 379 HOH HOH . I 3 HOH C 110 3511 381 HOH HOH . I 3 HOH C 111 3512 383 HOH HOH . I 3 HOH C 112 3513 385 HOH HOH . I 3 HOH C 113 3514 387 HOH HOH . I 3 HOH C 114 3515 388 HOH HOH . I 3 HOH C 115 3516 390 HOH HOH . I 3 HOH C 116 3517 391 HOH HOH . I 3 HOH C 117 3518 392 HOH HOH . I 3 HOH C 118 3519 395 HOH HOH . I 3 HOH C 119 3520 398 HOH HOH . I 3 HOH C 120 3521 405 HOH HOH . I 3 HOH C 121 3522 410 HOH HOH . I 3 HOH C 122 3523 412 HOH HOH . I 3 HOH C 123 3524 418 HOH HOH . I 3 HOH C 124 3525 423 HOH HOH . I 3 HOH C 125 3526 426 HOH HOH . I 3 HOH C 126 3527 427 HOH HOH . I 3 HOH C 127 3528 432 HOH HOH . I 3 HOH C 128 3529 434 HOH HOH . I 3 HOH C 129 3530 437 HOH HOH . I 3 HOH C 130 3531 442 HOH HOH . I 3 HOH C 131 3532 448 HOH HOH . I 3 HOH C 132 3533 457 HOH HOH . I 3 HOH C 133 3534 458 HOH HOH . I 3 HOH C 134 3535 461 HOH HOH . I 3 HOH C 135 3536 464 HOH HOH . I 3 HOH C 136 3537 471 HOH HOH . I 3 HOH C 137 3538 473 HOH HOH . I 3 HOH C 138 3539 477 HOH HOH . I 3 HOH C 139 3540 478 HOH HOH . I 3 HOH C 140 3541 485 HOH HOH . I 3 HOH C 141 3542 490 HOH HOH . I 3 HOH C 142 3543 492 HOH HOH . I 3 HOH C 143 3544 500 HOH HOH . I 3 HOH C 144 3545 501 HOH HOH . I 3 HOH C 145 3546 503 HOH HOH . I 3 HOH C 146 3547 506 HOH HOH . I 3 HOH C 147 3548 513 HOH HOH . I 3 HOH C 148 3549 514 HOH HOH . I 3 HOH C 149 3550 516 HOH HOH . I 3 HOH C 150 3551 517 HOH HOH . I 3 HOH C 151 3552 520 HOH HOH . I 3 HOH C 152 3553 525 HOH HOH . I 3 HOH C 153 3554 531 HOH HOH . I 3 HOH C 154 3555 532 HOH HOH . I 3 HOH C 155 3556 534 HOH HOH . I 3 HOH C 156 3557 540 HOH HOH . I 3 HOH C 157 3558 546 HOH HOH . I 3 HOH C 158 3559 547 HOH HOH . I 3 HOH C 159 3560 551 HOH HOH . I 3 HOH C 160 3561 552 HOH HOH . I 3 HOH C 161 3562 553 HOH HOH . I 3 HOH C 162 3563 558 HOH HOH . I 3 HOH C 163 3564 559 HOH HOH . I 3 HOH C 164 3565 563 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . F 2 5.15 33.001 34.702 1 11.73 ? PB GDP 3401 C 1 HETATM 2 O O1B GDP . . . F 2 6.279 33.913 35.083 1 9.5 ? O1B GDP 3401 C 1 HETATM 3 O O2B GDP . . . F 2 4.212 33.722 33.71 1 12.01 ? O2B GDP 3401 C 1 HETATM 4 O O3B GDP . . . F 2 5.466 31.526 34.456 1 9.53 ? O3B GDP 3401 C 1 HETATM 5 O O3A GDP . . . F 2 4.249 32.976 36.037 1 9.49 ? O3A GDP 3401 C 1 HETATM 6 P PA GDP . . . F 2 3.957 31.891 37.208 1 10.73 ? PA GDP 3401 C 1 HETATM 7 O O1A GDP . . . F 2 3.308 30.758 36.568 1 10.48 ? O1A GDP 3401 C 1 HETATM 8 O O2A GDP . . . F 2 5.285 31.499 37.916 1 12.46 ? O2A GDP 3401 C 1 HETATM 9 O O5' GDP . . . F 2 2.908 32.636 38.129 1 10.79 ? O5' GDP 3401 C 1 HETATM 10 C C5' GDP . . . F 2 3.45 33.865 38.739 1 11.97 ? C5' GDP 3401 C 1 HETATM 11 C C4' GDP . . . F 2 2.616 34.14 39.998 1 11.61 ? C4' GDP 3401 C 1 HETATM 12 O O4' GDP . . . F 2 1.207 34.272 39.642 1 12.28 ? O4' GDP 3401 C 1 HETATM 13 C C3' GDP . . . F 2 2.573 33.065 41.071 1 12.18 ? C3' GDP 3401 C 1 HETATM 14 O O3' GDP . . . F 2 2.626 33.333 42.432 1 11.91 ? O3' GDP 3401 C 1 HETATM 15 C C2' GDP . . . F 2 1.391 32.16 40.624 1 12.1 ? C2' GDP 3401 C 1 HETATM 16 O O2' GDP . . . F 2 0.798 31.474 41.741 1 13.9 ? O2' GDP 3401 C 1 HETATM 17 C C1' GDP . . . F 2 0.419 33.317 40.357 1 11 ? C1' GDP 3401 C 1 HETATM 18 N N9 GDP . . . F 2 -0.687 32.897 39.5 1 10.82 ? N9 GDP 3401 C 1 HETATM 19 C C8 GDP . . . F 2 -0.617 32.134 38.366 1 12.81 ? C8 GDP 3401 C 1 HETATM 20 N N7 GDP . . . F 2 -1.806 31.93 37.896 1 11.53 ? N7 GDP 3401 C 1 HETATM 21 C C5 GDP . . . F 2 -2.704 32.538 38.67 1 10.87 ? C5 GDP 3401 C 1 HETATM 22 C C6 GDP . . . F 2 -4.143 32.652 38.688 1 10.28 ? C6 GDP 3401 C 1 HETATM 23 O O6 GDP . . . F 2 -4.897 32.096 37.86 1 10.87 ? O6 GDP 3401 C 1 HETATM 24 N N1 GDP . . . F 2 -4.675 33.395 39.673 1 8.16 ? N1 GDP 3401 C 1 HETATM 25 C C2 GDP . . . F 2 -3.892 34.01 40.618 1 12.66 ? C2 GDP 3401 C 1 HETATM 26 N N2 GDP . . . F 2 -4.477 34.743 41.594 1 10.84 ? N2 GDP 3401 C 1 HETATM 27 N N3 GDP . . . F 2 -2.573 33.9 40.624 1 8.21 ? N3 GDP 3401 C 1 HETATM 28 C C4 GDP . . . F 2 -1.969 33.198 39.706 1 10.21 ? C4 GDP 3401 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 28 #