data_2CY5 # _model_server_result.job_id Xj5SlrYVJqIcWyB4yr2S3A _model_server_result.datetime_utc '2025-03-06 07:58:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2cy5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1500}' # _entry.id 2CY5 # _exptl.entry_id 2CY5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2CY5 _cell.length_a 73.385 _cell.length_b 73.385 _cell.length_c 59.889 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CY5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+2/3 1 0 0 0 -1 0 0 0 -1 0 0 39.926 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 5 A MSE 30 1_555 A N ALA 6 A ALA 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? covale ? covale2 A C VAL 39 A VAL 64 1_555 A N MSE 40 A MSE 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.35 ? covale ? covale3 A C MSE 40 A MSE 65 1_555 A N ASP 41 A ASP 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale4 A C GLU 50 A GLU 75 1_555 A N MSE 51 A MSE 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale5 A C MSE 51 A MSE 76 1_555 A N LEU 52 A LEU 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.288 ? covale ? covale6 A C VAL 85 A VAL 110 1_555 A N MSE 86 A MSE 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale7 A C MSE 86 A MSE 111 1_555 A N PRO 87 A PRO 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? metalc ? metalc1 C O HOH . A HOH 2 1_555 B CA CA . A CA 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc2 C O HOH . A HOH 3 1_555 B CA CA . A CA 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc3 A O ALA 6 A ALA 31 1_555 B CA CA . A CA 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? metalc ? metalc4 A OD1 ASP 125 A ASP 150 1_555 B CA CA . A CA 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc5 C O HOH . A HOH 200 1_555 B CA CA . A CA 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc6 C O HOH . A HOH 201 1_555 B CA CA . A CA 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc7 C O HOH . A HOH 216 1_555 B CA CA . A CA 1500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2CY5 _atom_sites.fract_transf_matrix[1][1] 0.013627 _atom_sites.fract_transf_matrix[1][2] 0.007867 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015735 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016698 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 1500 1500 CA CA . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 11 11 HOH HOH . C 3 HOH A 12 12 12 HOH HOH . C 3 HOH A 13 13 13 HOH HOH . C 3 HOH A 14 14 14 HOH HOH . C 3 HOH A 15 15 15 HOH HOH . C 3 HOH A 16 16 16 HOH HOH . C 3 HOH A 17 17 17 HOH HOH . C 3 HOH A 18 18 18 HOH HOH . C 3 HOH A 19 19 19 HOH HOH . C 3 HOH A 20 20 20 HOH HOH . C 3 HOH A 21 22 22 HOH HOH . C 3 HOH A 22 23 23 HOH HOH . C 3 HOH A 23 200 200 HOH HOH . C 3 HOH A 24 201 201 HOH HOH . C 3 HOH A 25 202 202 HOH HOH . C 3 HOH A 26 203 203 HOH HOH . C 3 HOH A 27 204 204 HOH HOH . C 3 HOH A 28 205 205 HOH HOH . C 3 HOH A 29 206 206 HOH HOH . C 3 HOH A 30 207 207 HOH HOH . C 3 HOH A 31 208 208 HOH HOH . C 3 HOH A 32 209 209 HOH HOH . C 3 HOH A 33 211 211 HOH HOH . C 3 HOH A 34 212 212 HOH HOH . C 3 HOH A 35 213 213 HOH HOH . C 3 HOH A 36 216 216 HOH HOH . C 3 HOH A 37 217 217 HOH HOH . C 3 HOH A 38 300 300 HOH HOH . C 3 HOH A 39 301 301 HOH HOH . C 3 HOH A 40 303 303 HOH HOH . C 3 HOH A 41 304 304 HOH HOH . C 3 HOH A 42 305 305 HOH HOH . C 3 HOH A 43 306 306 HOH HOH . C 3 HOH A 44 307 307 HOH HOH . C 3 HOH A 45 308 308 HOH HOH . C 3 HOH A 46 309 309 HOH HOH . C 3 HOH A 47 310 310 HOH HOH . C 3 HOH A 48 311 311 HOH HOH . C 3 HOH A 49 312 312 HOH HOH . C 3 HOH A 50 313 313 HOH HOH . C 3 HOH A 51 315 315 HOH HOH . C 3 HOH A 52 316 316 HOH HOH . C 3 HOH A 53 317 317 HOH HOH . C 3 HOH A 54 318 318 HOH HOH . C 3 HOH A 55 319 319 HOH HOH . C 3 HOH A 56 321 321 HOH HOH . C 3 HOH A 57 500 500 HOH HOH . C 3 HOH A 58 501 501 HOH HOH . C 3 HOH A 59 502 502 HOH HOH . C 3 HOH A 60 503 503 HOH HOH . C 3 HOH A 61 504 504 HOH HOH . C 3 HOH A 62 505 505 HOH HOH . C 3 HOH A 63 506 506 HOH HOH . C 3 HOH A 64 507 507 HOH HOH . C 3 HOH A 65 508 508 HOH HOH . C 3 HOH A 66 509 509 HOH HOH . C 3 HOH A 67 510 510 HOH HOH . C 3 HOH A 68 511 511 HOH HOH . C 3 HOH A 69 512 512 HOH HOH . C 3 HOH A 70 513 513 HOH HOH . C 3 HOH A 71 514 514 HOH HOH . C 3 HOH A 72 515 515 HOH HOH . C 3 HOH A 73 516 516 HOH HOH . C 3 HOH A 74 517 517 HOH HOH . C 3 HOH A 75 800 800 HOH HOH . C 3 HOH A 76 801 801 HOH HOH . C 3 HOH A 77 802 802 HOH HOH . C 3 HOH A 78 803 803 HOH HOH . C 3 HOH A 79 804 804 HOH HOH . C 3 HOH A 80 805 805 HOH HOH . C 3 HOH A 81 806 806 HOH HOH . C 3 HOH A 82 808 808 HOH HOH . C 3 HOH A 83 809 809 HOH HOH . C 3 HOH A 84 810 810 HOH HOH . C 3 HOH A 85 811 811 HOH HOH . C 3 HOH A 86 814 814 HOH HOH . C 3 HOH A 87 1000 1000 HOH HOH . C 3 HOH A 88 1001 1001 HOH HOH . C 3 HOH A 89 1002 1002 HOH HOH . C 3 HOH A 90 1003 1003 HOH HOH . C 3 HOH A 91 1006 1006 HOH HOH . C 3 HOH A 92 1008 1008 HOH HOH . C 3 HOH A 93 1009 1009 HOH HOH . C 3 HOH A 94 1010 1010 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 50.785 _atom_site.Cartn_y 21.05 _atom_site.Cartn_z 23.564 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 38.8 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1500 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #