data_2D0P # _model_server_result.job_id cBWaFX7kxyCszxkM_ckDUw _model_server_result.datetime_utc '2024-11-05 00:22:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2d0p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1005}' # _entry.id 2D0P # _exptl.entry_id 2D0P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2D0P _cell.length_a 81.92 _cell.length_b 85.37 _cell.length_c 296.99 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2D0P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 105 A THR 105 1_555 H CA CA . A CA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.531 ? metalc ? metalc2 A OG1 THR 105 A THR 105 1_555 H CA CA . A CA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc3 A OD2 ASP 166 A ASP 166 1_555 H CA CA . A CA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? metalc ? metalc4 A OD1 ASP 183 A ASP 183 1_555 H CA CA . A CA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc5 A OD2 ASP 183 A ASP 183 1_555 H CA CA . A CA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc6 A OE2 GLU 184 A GLU 184 1_555 H CA CA . A CA 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.352 ? metalc ? metalc7 H CA CA . A CA 1005 1_555 B OE1 GLU 31 B GLU 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc8 C O THR 105 C THR 105 1_555 K CA CA . C CA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc9 C OG1 THR 105 C THR 105 1_555 K CA CA . C CA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc10 C OD2 ASP 166 C ASP 166 1_555 K CA CA . C CA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc11 C OD1 ASP 183 C ASP 183 1_555 K CA CA . C CA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc12 C OD2 ASP 183 C ASP 183 1_555 K CA CA . C CA 1006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.109 ? metalc ? metalc13 K CA CA . C CA 1006 1_555 D OE1 GLU 31 D GLU 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2D0P _atom_sites.fract_transf_matrix[1][1] 0.012207 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011714 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003367 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 SO4 A 1 611 34 SO4 SO4 . F 3 SO4 A 1 612 35 SO4 SO4 . G 3 SO4 A 1 613 36 SO4 SO4 . H 4 CA A 1 1005 5 CA CA2 . I 3 SO4 C 1 611 37 SO4 SO4 . J 3 SO4 C 1 612 38 SO4 SO4 . K 4 CA C 1 1006 6 CA CA2 . L 5 HOH A 1 1006 9 HOH HOH . L 5 HOH A 2 1007 10 HOH HOH . L 5 HOH A 3 1008 11 HOH HOH . L 5 HOH A 4 1009 15 HOH HOH . L 5 HOH A 5 1010 16 HOH HOH . L 5 HOH A 6 1011 17 HOH HOH . L 5 HOH A 7 1012 18 HOH HOH . L 5 HOH A 8 1013 19 HOH HOH . L 5 HOH A 9 1014 20 HOH HOH . L 5 HOH A 10 1015 22 HOH HOH . L 5 HOH A 11 1016 23 HOH HOH . L 5 HOH A 12 1017 24 HOH HOH . L 5 HOH A 13 1018 28 HOH HOH . M 5 HOH B 1 126 1 HOH HOH . M 5 HOH B 2 127 4 HOH HOH . M 5 HOH B 3 128 5 HOH HOH . M 5 HOH B 4 129 7 HOH HOH . M 5 HOH B 5 130 8 HOH HOH . M 5 HOH B 6 131 12 HOH HOH . M 5 HOH B 7 132 13 HOH HOH . M 5 HOH B 8 133 21 HOH HOH . M 5 HOH B 9 134 26 HOH HOH . M 5 HOH B 10 135 32 HOH HOH . N 5 HOH C 1 1007 14 HOH HOH . N 5 HOH C 2 1008 25 HOH HOH . N 5 HOH C 3 1009 30 HOH HOH . N 5 HOH C 4 1010 33 HOH HOH . O 5 HOH D 1 126 2 HOH HOH . O 5 HOH D 2 127 3 HOH HOH . O 5 HOH D 3 128 6 HOH HOH . O 5 HOH D 4 129 27 HOH HOH . O 5 HOH D 5 130 29 HOH HOH . O 5 HOH D 6 131 31 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 4 _atom_site.Cartn_x 58.038 _atom_site.Cartn_y 57.996 _atom_site.Cartn_z 26.963 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 66.8 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1005 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #