data_2D0S # _model_server_result.job_id MeZghCs11jCiolIKWod3mg _model_server_result.datetime_utc '2025-04-07 22:47:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2d0s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":80}' # _entry.id 2D0S # _exptl.entry_id 2D0S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2D0S _cell.length_a 49.25 _cell.length_b 58.413 _cell.length_c 56.315 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2D0S _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 10 A CYS 10 1_555 B CAB HEC . A HEC 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.85 ? covale ? covale2 A SG CYS 13 A CYS 13 1_555 B CAC HEC . A HEC 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc1 A NE2 HIS 14 A HIS 14 1_555 B FE HEC . A HEC 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc2 A SD MET 57 A MET 57 1_555 B FE HEC . A HEC 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 113 n n FE NB HEC sing 114 n n FE NC HEC sing 115 n n FE ND HEC sing 116 n n CHA C1A HEC doub 117 n n CHA C4D HEC sing 118 n n CHA HHA HEC sing 119 n n CHB C4A HEC doub 120 n n CHB C1B HEC sing 121 n n CHB HHB HEC sing 122 n n CHC C4B HEC doub 123 n n CHC C1C HEC sing 124 n n CHC HHC HEC sing 125 n n CHD C4C HEC doub 126 n n CHD C1D HEC sing 127 n n CHD HHD HEC sing 128 n n NA C1A HEC sing 129 n y NA C4A HEC sing 130 n y C1A C2A HEC sing 131 n y C2A C3A HEC doub 132 n y C2A CAA HEC sing 133 n n C3A C4A HEC sing 134 n y C3A CMA HEC sing 135 n n CMA HMA1 HEC sing 136 n n CMA HMA2 HEC sing 137 n n CMA HMA3 HEC sing 138 n n CAA CBA HEC sing 139 n n CAA HAA1 HEC sing 140 n n CAA HAA2 HEC sing 141 n n CBA CGA HEC sing 142 n n CBA HBA1 HEC sing 143 n n CBA HBA2 HEC sing 144 n n CGA O1A HEC doub 145 n n CGA O2A HEC sing 146 n n O2A H2A HEC sing 147 n n NB C1B HEC sing 148 n y NB C4B HEC sing 149 n y C1B C2B HEC doub 150 n y C2B C3B HEC sing 151 n y C2B CMB HEC sing 152 n n C3B C4B HEC sing 153 n y C3B CAB HEC doub 154 e n CMB HMB1 HEC sing 155 n n CMB HMB2 HEC sing 156 n n CMB HMB3 HEC sing 157 n n CAB CBB HEC sing 158 n n CAB HAB HEC sing 159 n n CBB HBB1 HEC sing 160 n n CBB HBB2 HEC sing 161 n n CBB HBB3 HEC sing 162 n n NC C1C HEC sing 163 n y NC C4C HEC sing 164 n y C1C C2C HEC doub 165 n y C2C C3C HEC sing 166 n y C2C CMC HEC sing 167 n n C3C C4C HEC sing 168 n y C3C CAC HEC doub 169 e n CMC HMC1 HEC sing 170 n n CMC HMC2 HEC sing 171 n n CMC HMC3 HEC sing 172 n n CAC CBC HEC sing 173 n n CAC HAC HEC sing 174 n n CBC HBC1 HEC sing 175 n n CBC HBC2 HEC sing 176 n n CBC HBC3 HEC sing 177 n n ND C1D HEC sing 178 n y ND C4D HEC sing 179 n y C1D C2D HEC doub 180 n y C2D C3D HEC sing 181 n y C2D CMD HEC sing 182 n n C3D C4D HEC doub 183 n y C3D CAD HEC sing 184 n n CMD HMD1 HEC sing 185 n n CMD HMD2 HEC sing 186 n n CMD HMD3 HEC sing 187 n n CAD CBD HEC sing 188 n n CAD HAD1 HEC sing 189 n n CAD HAD2 HEC sing 190 n n CBD CGD HEC sing 191 n n CBD HBD1 HEC sing 192 n n CBD HBD2 HEC sing 193 n n CGD O1D HEC doub 194 n n CGD O2D HEC sing 195 n n O2D H2D HEC sing 196 n n # _atom_sites.entry_id 2D0S _atom_sites.fract_transf_matrix[1][1] 0.020305 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017119 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017757 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 80 80 HEC HEC . C 3 HOH A 1 81 1 HOH HOH . C 3 HOH A 2 82 2 HOH HOH . C 3 HOH A 3 83 3 HOH HOH . C 3 HOH A 4 84 4 HOH HOH . C 3 HOH A 5 85 5 HOH HOH . C 3 HOH A 6 86 6 HOH HOH . C 3 HOH A 7 87 7 HOH HOH . C 3 HOH A 8 88 8 HOH HOH . C 3 HOH A 9 89 9 HOH HOH . C 3 HOH A 10 90 10 HOH HOH . C 3 HOH A 11 91 11 HOH HOH . C 3 HOH A 12 92 12 HOH HOH . C 3 HOH A 13 93 13 HOH HOH . C 3 HOH A 14 94 14 HOH HOH . C 3 HOH A 15 95 15 HOH HOH . C 3 HOH A 16 96 16 HOH HOH . C 3 HOH A 17 97 17 HOH HOH . C 3 HOH A 18 98 18 HOH HOH . C 3 HOH A 19 99 19 HOH HOH . C 3 HOH A 20 100 20 HOH HOH . C 3 HOH A 21 101 21 HOH HOH . C 3 HOH A 22 102 22 HOH HOH . C 3 HOH A 23 103 23 HOH HOH . C 3 HOH A 24 104 24 HOH HOH . C 3 HOH A 25 105 25 HOH HOH . C 3 HOH A 26 106 26 HOH HOH . C 3 HOH A 27 107 27 HOH HOH . C 3 HOH A 28 108 28 HOH HOH . C 3 HOH A 29 109 29 HOH HOH . C 3 HOH A 30 110 30 HOH HOH . C 3 HOH A 31 111 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 18.068 16.353 5.462 1 11.91 ? FE HEC 80 A 1 HETATM 2 C CHA HEC . . . B 2 16.292 18.335 7.633 1 11.86 ? CHA HEC 80 A 1 HETATM 3 C CHB HEC . . . B 2 15.23 14.914 4.335 1 10.74 ? CHB HEC 80 A 1 HETATM 4 C CHC HEC . . . B 2 19.881 14.865 2.977 1 11.06 ? CHC HEC 80 A 1 HETATM 5 C CHD HEC . . . B 2 21.012 17.376 6.988 1 12.82 ? CHD HEC 80 A 1 HETATM 6 N NA HEC . . . B 2 16.176 16.554 5.896 1 11.97 ? NA HEC 80 A 1 HETATM 7 C C1A HEC . . . B 2 15.614 17.434 6.839 1 12.05 ? C1A HEC 80 A 1 HETATM 8 C C2A HEC . . . B 2 14.179 17.268 6.825 1 10.27 ? C2A HEC 80 A 1 HETATM 9 C C3A HEC . . . B 2 13.873 16.289 5.947 1 11.62 ? C3A HEC 80 A 1 HETATM 10 C C4A HEC . . . B 2 15.122 15.84 5.33 1 12.45 ? C4A HEC 80 A 1 HETATM 11 C CMA HEC . . . B 2 12.45 15.762 5.582 1 5.99 ? CMA HEC 80 A 1 HETATM 12 C CAA HEC . . . B 2 13.189 18.05 7.74 1 12.02 ? CAA HEC 80 A 1 HETATM 13 C CBA HEC . . . B 2 12.919 19.39 7.057 1 12.5 ? CBA HEC 80 A 1 HETATM 14 C CGA HEC . . . B 2 12.234 20.362 7.978 1 15.39 ? CGA HEC 80 A 1 HETATM 15 O O1A HEC . . . B 2 11.681 19.944 9.019 1 17.2 ? O1A HEC 80 A 1 HETATM 16 O O2A HEC . . . B 2 12.212 21.558 7.639 1 15.03 ? O2A HEC 80 A 1 HETATM 17 N NB HEC . . . B 2 17.656 15.141 3.929 1 11.04 ? NB HEC 80 A 1 HETATM 18 C C1B HEC . . . B 2 16.396 14.669 3.623 1 12.09 ? C1B HEC 80 A 1 HETATM 19 C C2B HEC . . . B 2 16.479 13.947 2.382 1 11.88 ? C2B HEC 80 A 1 HETATM 20 C C3B HEC . . . B 2 17.772 13.906 2.012 1 10.44 ? C3B HEC 80 A 1 HETATM 21 C C4B HEC . . . B 2 18.519 14.704 2.962 1 10.56 ? C4B HEC 80 A 1 HETATM 22 C CMB HEC . . . B 2 15.274 13.202 1.77 1 9.61 ? CMB HEC 80 A 1 HETATM 23 C CAB HEC . . . B 2 18.425 13.16 0.799 1 10.57 ? CAB HEC 80 A 1 HETATM 24 C CBB HEC . . . B 2 17.777 13.572 -0.544 1 9.24 ? CBB HEC 80 A 1 HETATM 25 N NC HEC . . . B 2 20.032 16.15 5.088 1 11.79 ? NC HEC 80 A 1 HETATM 26 C C1C HEC . . . B 2 20.584 15.473 3.993 1 13.12 ? C1C HEC 80 A 1 HETATM 27 C C2C HEC . . . B 2 22.022 15.456 4.126 1 12.9 ? C2C HEC 80 A 1 HETATM 28 C C3C HEC . . . B 2 22.334 16.328 5.134 1 13.01 ? C3C HEC 80 A 1 HETATM 29 C C4C HEC . . . B 2 21.093 16.649 5.814 1 13.55 ? C4C HEC 80 A 1 HETATM 30 C CMC HEC . . . B 2 22.928 15.004 2.96 1 13.11 ? CMC HEC 80 A 1 HETATM 31 C CAC HEC . . . B 2 23.723 16.718 5.772 1 12.03 ? CAC HEC 80 A 1 HETATM 32 C CBC HEC . . . B 2 24.946 16.81 4.851 1 13.32 ? CBC HEC 80 A 1 HETATM 33 N ND HEC . . . B 2 18.592 17.719 7.078 1 14.91 ? ND HEC 80 A 1 HETATM 34 C C1D HEC . . . B 2 19.886 17.996 7.48 1 15.43 ? C1D HEC 80 A 1 HETATM 35 C C2D HEC . . . B 2 19.845 18.95 8.562 1 15.98 ? C2D HEC 80 A 1 HETATM 36 C C3D HEC . . . B 2 18.374 19.212 8.777 1 14.91 ? C3D HEC 80 A 1 HETATM 37 C C4D HEC . . . B 2 17.671 18.4 7.815 1 14.62 ? C4D HEC 80 A 1 HETATM 38 C CMD HEC . . . B 2 21.053 19.551 9.299 1 12.15 ? CMD HEC 80 A 1 HETATM 39 C CAD HEC . . . B 2 17.727 20.197 9.739 1 13.66 ? CAD HEC 80 A 1 HETATM 40 C CBD HEC . . . B 2 17.452 21.459 8.944 1 16.42 ? CBD HEC 80 A 1 HETATM 41 C CGD HEC . . . B 2 16.784 22.447 9.886 1 17.14 ? CGD HEC 80 A 1 HETATM 42 O O1D HEC . . . B 2 17.199 22.467 11.067 1 16.12 ? O1D HEC 80 A 1 HETATM 43 O O2D HEC . . . B 2 15.844 23.2 9.454 1 17.67 ? O2D HEC 80 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #