data_2D0T # _model_server_result.job_id laRardXZoB0cUYXaYU9tjQ _model_server_result.datetime_utc '2024-11-01 03:44:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2d0t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1501}' # _entry.id 2D0T # _exptl.entry_id 2D0T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 144.173 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-PHENYL-1H-IMIDAZOLE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2D0T _cell.length_a 86.07 _cell.length_b 98.027 _cell.length_c 130.951 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2D0T _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K 1 1 B,G,H,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 311 A CYS 308 1_555 B SG CYS 311 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc1 A NE2 HIS 349 A HIS 346 1_555 C FE HEM . A HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc2 C FE HEM . A HEM 404 1_555 D N3 PIM . A PIM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc3 B NE2 HIS 349 B HIS 346 1_555 G FE HEM . B HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc4 G FE HEM . B HEM 404 1_555 H N3 PIM . B PIM 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? # _chem_comp.formula 'C9 H8 N2' _chem_comp.formula_weight 144.173 _chem_comp.id PIM _chem_comp.mon_nstd_flag . _chem_comp.name 4-PHENYL-1H-IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PIM sing 372 n y N1 C5 PIM sing 373 n y N1 HN1 PIM sing 374 n n C2 N3 PIM doub 375 n y C2 H2 PIM sing 376 n n N3 C4 PIM sing 377 n y C4 C5 PIM doub 378 n y C4 H4 PIM sing 379 n n C5 C6 PIM sing 380 n y C6 C7 PIM doub 381 n y C6 C11 PIM sing 382 n y C7 C8 PIM sing 383 n y C7 H7 PIM sing 384 n n C8 C9 PIM doub 385 n y C8 H8 PIM sing 386 n n C9 C10 PIM sing 387 n y C9 H9 PIM sing 388 n n C10 C11 PIM doub 389 n y C10 H10 PIM sing 390 n n C11 H11 PIM sing 391 n n # _atom_sites.entry_id 2D0T _atom_sites.fract_transf_matrix[1][1] 0.011618 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010201 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007636 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 404 404 HEM HEM . D 3 PIM A 1 501 501 PIM PIM . E 4 NHE A 1 502 502 NHE NHE . F 4 NHE A 1 503 503 NHE NHE . G 2 HEM B 1 404 404 HEM HEM . H 3 PIM B 1 1501 1501 PIM PIM . I 4 NHE B 1 1502 1502 NHE NHE . J 4 NHE B 1 1503 1503 NHE NHE . K 5 HOH A 1 504 3 HOH HOH . K 5 HOH A 2 505 4 HOH HOH . K 5 HOH A 3 506 5 HOH HOH . K 5 HOH A 4 507 7 HOH HOH . K 5 HOH A 5 508 11 HOH HOH . K 5 HOH A 6 509 12 HOH HOH . K 5 HOH A 7 510 13 HOH HOH . K 5 HOH A 8 511 14 HOH HOH . K 5 HOH A 9 512 17 HOH HOH . K 5 HOH A 10 513 21 HOH HOH . K 5 HOH A 11 514 22 HOH HOH . K 5 HOH A 12 515 25 HOH HOH . K 5 HOH A 13 516 26 HOH HOH . K 5 HOH A 14 517 27 HOH HOH . K 5 HOH A 15 518 28 HOH HOH . K 5 HOH A 16 519 29 HOH HOH . K 5 HOH A 17 520 33 HOH HOH . K 5 HOH A 18 521 35 HOH HOH . K 5 HOH A 19 522 36 HOH HOH . K 5 HOH A 20 523 37 HOH HOH . K 5 HOH A 21 524 38 HOH HOH . K 5 HOH A 22 525 39 HOH HOH . K 5 HOH A 23 526 40 HOH HOH . K 5 HOH A 24 527 42 HOH HOH . K 5 HOH A 25 528 45 HOH HOH . K 5 HOH A 26 529 47 HOH HOH . K 5 HOH A 27 530 50 HOH HOH . K 5 HOH A 28 531 51 HOH HOH . K 5 HOH A 29 532 52 HOH HOH . K 5 HOH A 30 533 54 HOH HOH . K 5 HOH A 31 534 55 HOH HOH . K 5 HOH A 32 535 56 HOH HOH . K 5 HOH A 33 536 58 HOH HOH . K 5 HOH A 34 537 59 HOH HOH . K 5 HOH A 35 538 61 HOH HOH . K 5 HOH A 36 539 62 HOH HOH . K 5 HOH A 37 540 63 HOH HOH . K 5 HOH A 38 541 65 HOH HOH . K 5 HOH A 39 542 69 HOH HOH . K 5 HOH A 40 543 70 HOH HOH . K 5 HOH A 41 544 72 HOH HOH . K 5 HOH A 42 545 74 HOH HOH . K 5 HOH A 43 546 75 HOH HOH . K 5 HOH A 44 547 86 HOH HOH . K 5 HOH A 45 548 87 HOH HOH . K 5 HOH A 46 549 88 HOH HOH . K 5 HOH A 47 550 90 HOH HOH . K 5 HOH A 48 551 91 HOH HOH . K 5 HOH A 49 552 92 HOH HOH . K 5 HOH A 50 553 96 HOH HOH . K 5 HOH A 51 554 97 HOH HOH . K 5 HOH A 52 555 98 HOH HOH . K 5 HOH A 53 556 99 HOH HOH . K 5 HOH A 54 557 100 HOH HOH . K 5 HOH A 55 558 103 HOH HOH . K 5 HOH A 56 559 105 HOH HOH . K 5 HOH A 57 560 108 HOH HOH . K 5 HOH A 58 561 109 HOH HOH . K 5 HOH A 59 562 110 HOH HOH . K 5 HOH A 60 563 114 HOH HOH . K 5 HOH A 61 564 116 HOH HOH . K 5 HOH A 62 565 117 HOH HOH . K 5 HOH A 63 566 119 HOH HOH . K 5 HOH A 64 567 126 HOH HOH . K 5 HOH A 65 568 128 HOH HOH . K 5 HOH A 66 569 129 HOH HOH . K 5 HOH A 67 570 130 HOH HOH . K 5 HOH A 68 571 131 HOH HOH . K 5 HOH A 69 572 132 HOH HOH . K 5 HOH A 70 573 133 HOH HOH . K 5 HOH A 71 574 137 HOH HOH . K 5 HOH A 72 575 138 HOH HOH . L 5 HOH B 1 1504 1 HOH HOH . L 5 HOH B 2 1505 2 HOH HOH . L 5 HOH B 3 1506 6 HOH HOH . L 5 HOH B 4 1507 8 HOH HOH . L 5 HOH B 5 1508 9 HOH HOH . L 5 HOH B 6 1509 10 HOH HOH . L 5 HOH B 7 1510 15 HOH HOH . L 5 HOH B 8 1511 16 HOH HOH . L 5 HOH B 9 1512 18 HOH HOH . L 5 HOH B 10 1513 19 HOH HOH . L 5 HOH B 11 1514 20 HOH HOH . L 5 HOH B 12 1515 23 HOH HOH . L 5 HOH B 13 1516 24 HOH HOH . L 5 HOH B 14 1517 30 HOH HOH . L 5 HOH B 15 1518 31 HOH HOH . L 5 HOH B 16 1519 32 HOH HOH . L 5 HOH B 17 1520 34 HOH HOH . L 5 HOH B 18 1521 41 HOH HOH . L 5 HOH B 19 1522 43 HOH HOH . L 5 HOH B 20 1523 44 HOH HOH . L 5 HOH B 21 1524 46 HOH HOH . L 5 HOH B 22 1525 48 HOH HOH . L 5 HOH B 23 1526 49 HOH HOH . L 5 HOH B 24 1527 53 HOH HOH . L 5 HOH B 25 1528 57 HOH HOH . L 5 HOH B 26 1529 60 HOH HOH . L 5 HOH B 27 1530 64 HOH HOH . L 5 HOH B 28 1531 66 HOH HOH . L 5 HOH B 29 1532 67 HOH HOH . L 5 HOH B 30 1533 68 HOH HOH . L 5 HOH B 31 1534 71 HOH HOH . L 5 HOH B 32 1535 73 HOH HOH . L 5 HOH B 33 1536 76 HOH HOH . L 5 HOH B 34 1537 77 HOH HOH . L 5 HOH B 35 1538 78 HOH HOH . L 5 HOH B 36 1539 79 HOH HOH . L 5 HOH B 37 1540 80 HOH HOH . L 5 HOH B 38 1541 81 HOH HOH . L 5 HOH B 39 1542 82 HOH HOH . L 5 HOH B 40 1543 83 HOH HOH . L 5 HOH B 41 1544 84 HOH HOH . L 5 HOH B 42 1545 85 HOH HOH . L 5 HOH B 43 1546 89 HOH HOH . L 5 HOH B 44 1547 93 HOH HOH . L 5 HOH B 45 1548 94 HOH HOH . L 5 HOH B 46 1549 95 HOH HOH . L 5 HOH B 47 1550 101 HOH HOH . L 5 HOH B 48 1551 102 HOH HOH . L 5 HOH B 49 1552 104 HOH HOH . L 5 HOH B 50 1553 106 HOH HOH . L 5 HOH B 51 1554 107 HOH HOH . L 5 HOH B 52 1555 111 HOH HOH . L 5 HOH B 53 1556 112 HOH HOH . L 5 HOH B 54 1557 113 HOH HOH . L 5 HOH B 55 1558 115 HOH HOH . L 5 HOH B 56 1559 118 HOH HOH . L 5 HOH B 57 1560 120 HOH HOH . L 5 HOH B 58 1561 121 HOH HOH . L 5 HOH B 59 1562 122 HOH HOH . L 5 HOH B 60 1563 123 HOH HOH . L 5 HOH B 61 1564 124 HOH HOH . L 5 HOH B 62 1565 125 HOH HOH . L 5 HOH B 63 1566 127 HOH HOH . L 5 HOH B 64 1567 134 HOH HOH . L 5 HOH B 65 1568 135 HOH HOH . L 5 HOH B 66 1569 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PIM . . . H 3 72.304 18.15 33.148 1 44.52 ? N1 PIM 1501 B 1 HETATM 2 C C2 PIM . . . H 3 71.079 17.679 33.53 1 47.35 ? C2 PIM 1501 B 1 HETATM 3 N N3 PIM . . . H 3 71.033 16.386 33.469 1 40.72 ? N3 PIM 1501 B 1 HETATM 4 C C4 PIM . . . H 3 72.172 15.953 33.063 1 45.1 ? C4 PIM 1501 B 1 HETATM 5 C C5 PIM . . . H 3 72.995 17.026 32.85 1 41.33 ? C5 PIM 1501 B 1 HETATM 6 C C6 PIM . . . H 3 74.415 16.951 32.367 1 42.45 ? C6 PIM 1501 B 1 HETATM 7 C C7 PIM . . . H 3 75.238 18.084 32.57 1 37.56 ? C7 PIM 1501 B 1 HETATM 8 C C8 PIM . . . H 3 76.61 18.024 32.103 1 37.53 ? C8 PIM 1501 B 1 HETATM 9 C C9 PIM . . . H 3 77.016 16.827 31.479 1 40.68 ? C9 PIM 1501 B 1 HETATM 10 C C10 PIM . . . H 3 76.204 15.688 31.27 1 35.63 ? C10 PIM 1501 B 1 HETATM 11 C C11 PIM . . . H 3 74.865 15.777 31.735 1 36.8 ? C11 PIM 1501 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 11 #