data_2D0T
#
_model_server_result.job_id            ByedqoTYhpbk-gOGQjQMWQ 
_model_server_result.datetime_utc      '2024-11-01 03:29:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2d0t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    2D0T 
#
_exptl.entry_id    2D0T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              144.173 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-PHENYL-1H-IMIDAZOLE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2D0T 
_cell.length_a            86.07 
_cell.length_b            98.027 
_cell.length_c            130.951 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2D0T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 311 A CYS 308 1_555 B SG CYS 311 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc1 A NE2 HIS 349 A HIS 346 1_555 C FE HEM . A HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? 
metalc ? metalc2 C FE HEM . A HEM 404 1_555 D N3 PIM . A PIM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc3 B NE2 HIS 349 B HIS 346 1_555 G FE HEM . B HEM 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
metalc ? metalc4 G FE HEM . B HEM 404 1_555 H N3 PIM . B PIM 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
#
_chem_comp.formula           'C9 H8 N2' 
_chem_comp.formula_weight    144.173 
_chem_comp.id                PIM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-PHENYL-1H-IMIDAZOLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PIM sing 372 n y 
N1 C5 PIM sing 373 n y 
N1 HN1 PIM sing 374 n n 
C2 N3 PIM doub 375 n y 
C2 H2 PIM sing 376 n n 
N3 C4 PIM sing 377 n y 
C4 C5 PIM doub 378 n y 
C4 H4 PIM sing 379 n n 
C5 C6 PIM sing 380 n y 
C6 C7 PIM doub 381 n y 
C6 C11 PIM sing 382 n y 
C7 C8 PIM sing 383 n y 
C7 H7 PIM sing 384 n n 
C8 C9 PIM doub 385 n y 
C8 H8 PIM sing 386 n n 
C9 C10 PIM sing 387 n y 
C9 H9 PIM sing 388 n n 
C10 C11 PIM doub 389 n y 
C10 H10 PIM sing 390 n n 
C11 H11 PIM sing 391 n n 
#
_atom_sites.entry_id                     2D0T 
_atom_sites.fract_transf_matrix[1][1]    0.011618 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010201 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007636 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 404 404 HEM HEM . 
D 3 PIM A 1 501 501 PIM PIM . 
E 4 NHE A 1 502 502 NHE NHE . 
F 4 NHE A 1 503 503 NHE NHE . 
G 2 HEM B 1 404 404 HEM HEM . 
H 3 PIM B 1 1501 1501 PIM PIM . 
I 4 NHE B 1 1502 1502 NHE NHE . 
J 4 NHE B 1 1503 1503 NHE NHE . 
K 5 HOH A 1 504 3 HOH HOH . 
K 5 HOH A 2 505 4 HOH HOH . 
K 5 HOH A 3 506 5 HOH HOH . 
K 5 HOH A 4 507 7 HOH HOH . 
K 5 HOH A 5 508 11 HOH HOH . 
K 5 HOH A 6 509 12 HOH HOH . 
K 5 HOH A 7 510 13 HOH HOH . 
K 5 HOH A 8 511 14 HOH HOH . 
K 5 HOH A 9 512 17 HOH HOH . 
K 5 HOH A 10 513 21 HOH HOH . 
K 5 HOH A 11 514 22 HOH HOH . 
K 5 HOH A 12 515 25 HOH HOH . 
K 5 HOH A 13 516 26 HOH HOH . 
K 5 HOH A 14 517 27 HOH HOH . 
K 5 HOH A 15 518 28 HOH HOH . 
K 5 HOH A 16 519 29 HOH HOH . 
K 5 HOH A 17 520 33 HOH HOH . 
K 5 HOH A 18 521 35 HOH HOH . 
K 5 HOH A 19 522 36 HOH HOH . 
K 5 HOH A 20 523 37 HOH HOH . 
K 5 HOH A 21 524 38 HOH HOH . 
K 5 HOH A 22 525 39 HOH HOH . 
K 5 HOH A 23 526 40 HOH HOH . 
K 5 HOH A 24 527 42 HOH HOH . 
K 5 HOH A 25 528 45 HOH HOH . 
K 5 HOH A 26 529 47 HOH HOH . 
K 5 HOH A 27 530 50 HOH HOH . 
K 5 HOH A 28 531 51 HOH HOH . 
K 5 HOH A 29 532 52 HOH HOH . 
K 5 HOH A 30 533 54 HOH HOH . 
K 5 HOH A 31 534 55 HOH HOH . 
K 5 HOH A 32 535 56 HOH HOH . 
K 5 HOH A 33 536 58 HOH HOH . 
K 5 HOH A 34 537 59 HOH HOH . 
K 5 HOH A 35 538 61 HOH HOH . 
K 5 HOH A 36 539 62 HOH HOH . 
K 5 HOH A 37 540 63 HOH HOH . 
K 5 HOH A 38 541 65 HOH HOH . 
K 5 HOH A 39 542 69 HOH HOH . 
K 5 HOH A 40 543 70 HOH HOH . 
K 5 HOH A 41 544 72 HOH HOH . 
K 5 HOH A 42 545 74 HOH HOH . 
K 5 HOH A 43 546 75 HOH HOH . 
K 5 HOH A 44 547 86 HOH HOH . 
K 5 HOH A 45 548 87 HOH HOH . 
K 5 HOH A 46 549 88 HOH HOH . 
K 5 HOH A 47 550 90 HOH HOH . 
K 5 HOH A 48 551 91 HOH HOH . 
K 5 HOH A 49 552 92 HOH HOH . 
K 5 HOH A 50 553 96 HOH HOH . 
K 5 HOH A 51 554 97 HOH HOH . 
K 5 HOH A 52 555 98 HOH HOH . 
K 5 HOH A 53 556 99 HOH HOH . 
K 5 HOH A 54 557 100 HOH HOH . 
K 5 HOH A 55 558 103 HOH HOH . 
K 5 HOH A 56 559 105 HOH HOH . 
K 5 HOH A 57 560 108 HOH HOH . 
K 5 HOH A 58 561 109 HOH HOH . 
K 5 HOH A 59 562 110 HOH HOH . 
K 5 HOH A 60 563 114 HOH HOH . 
K 5 HOH A 61 564 116 HOH HOH . 
K 5 HOH A 62 565 117 HOH HOH . 
K 5 HOH A 63 566 119 HOH HOH . 
K 5 HOH A 64 567 126 HOH HOH . 
K 5 HOH A 65 568 128 HOH HOH . 
K 5 HOH A 66 569 129 HOH HOH . 
K 5 HOH A 67 570 130 HOH HOH . 
K 5 HOH A 68 571 131 HOH HOH . 
K 5 HOH A 69 572 132 HOH HOH . 
K 5 HOH A 70 573 133 HOH HOH . 
K 5 HOH A 71 574 137 HOH HOH . 
K 5 HOH A 72 575 138 HOH HOH . 
L 5 HOH B 1 1504 1 HOH HOH . 
L 5 HOH B 2 1505 2 HOH HOH . 
L 5 HOH B 3 1506 6 HOH HOH . 
L 5 HOH B 4 1507 8 HOH HOH . 
L 5 HOH B 5 1508 9 HOH HOH . 
L 5 HOH B 6 1509 10 HOH HOH . 
L 5 HOH B 7 1510 15 HOH HOH . 
L 5 HOH B 8 1511 16 HOH HOH . 
L 5 HOH B 9 1512 18 HOH HOH . 
L 5 HOH B 10 1513 19 HOH HOH . 
L 5 HOH B 11 1514 20 HOH HOH . 
L 5 HOH B 12 1515 23 HOH HOH . 
L 5 HOH B 13 1516 24 HOH HOH . 
L 5 HOH B 14 1517 30 HOH HOH . 
L 5 HOH B 15 1518 31 HOH HOH . 
L 5 HOH B 16 1519 32 HOH HOH . 
L 5 HOH B 17 1520 34 HOH HOH . 
L 5 HOH B 18 1521 41 HOH HOH . 
L 5 HOH B 19 1522 43 HOH HOH . 
L 5 HOH B 20 1523 44 HOH HOH . 
L 5 HOH B 21 1524 46 HOH HOH . 
L 5 HOH B 22 1525 48 HOH HOH . 
L 5 HOH B 23 1526 49 HOH HOH . 
L 5 HOH B 24 1527 53 HOH HOH . 
L 5 HOH B 25 1528 57 HOH HOH . 
L 5 HOH B 26 1529 60 HOH HOH . 
L 5 HOH B 27 1530 64 HOH HOH . 
L 5 HOH B 28 1531 66 HOH HOH . 
L 5 HOH B 29 1532 67 HOH HOH . 
L 5 HOH B 30 1533 68 HOH HOH . 
L 5 HOH B 31 1534 71 HOH HOH . 
L 5 HOH B 32 1535 73 HOH HOH . 
L 5 HOH B 33 1536 76 HOH HOH . 
L 5 HOH B 34 1537 77 HOH HOH . 
L 5 HOH B 35 1538 78 HOH HOH . 
L 5 HOH B 36 1539 79 HOH HOH . 
L 5 HOH B 37 1540 80 HOH HOH . 
L 5 HOH B 38 1541 81 HOH HOH . 
L 5 HOH B 39 1542 82 HOH HOH . 
L 5 HOH B 40 1543 83 HOH HOH . 
L 5 HOH B 41 1544 84 HOH HOH . 
L 5 HOH B 42 1545 85 HOH HOH . 
L 5 HOH B 43 1546 89 HOH HOH . 
L 5 HOH B 44 1547 93 HOH HOH . 
L 5 HOH B 45 1548 94 HOH HOH . 
L 5 HOH B 46 1549 95 HOH HOH . 
L 5 HOH B 47 1550 101 HOH HOH . 
L 5 HOH B 48 1551 102 HOH HOH . 
L 5 HOH B 49 1552 104 HOH HOH . 
L 5 HOH B 50 1553 106 HOH HOH . 
L 5 HOH B 51 1554 107 HOH HOH . 
L 5 HOH B 52 1555 111 HOH HOH . 
L 5 HOH B 53 1556 112 HOH HOH . 
L 5 HOH B 54 1557 113 HOH HOH . 
L 5 HOH B 55 1558 115 HOH HOH . 
L 5 HOH B 56 1559 118 HOH HOH . 
L 5 HOH B 57 1560 120 HOH HOH . 
L 5 HOH B 58 1561 121 HOH HOH . 
L 5 HOH B 59 1562 122 HOH HOH . 
L 5 HOH B 60 1563 123 HOH HOH . 
L 5 HOH B 61 1564 124 HOH HOH . 
L 5 HOH B 62 1565 125 HOH HOH . 
L 5 HOH B 63 1566 127 HOH HOH . 
L 5 HOH B 64 1567 134 HOH HOH . 
L 5 HOH B 65 1568 135 HOH HOH . 
L 5 HOH B 66 1569 136 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PIM . . . D 3 61.277 52.421 19.856 1 36.03 ? N1 PIM 501 A 1 
HETATM 2 C C2 PIM . . . D 3 62.549 52.866 19.906 1 39.18 ? C2 PIM 501 A 1 
HETATM 3 N N3 PIM . . . D 3 62.737 53.852 19.089 1 30.99 ? N3 PIM 501 A 1 
HETATM 4 C C4 PIM . . . D 3 61.644 54.094 18.484 1 34.82 ? C4 PIM 501 A 1 
HETATM 5 C C5 PIM . . . D 3 60.7 53.221 18.933 1 33.54 ? C5 PIM 501 A 1 
HETATM 6 C C6 PIM . . . D 3 59.258 53.166 18.458 1 36.68 ? C6 PIM 501 A 1 
HETATM 7 C C7 PIM . . . D 3 58.31 52.556 19.3 1 28.28 ? C7 PIM 501 A 1 
HETATM 8 C C8 PIM . . . D 3 56.934 52.49 18.845 1 34.05 ? C8 PIM 501 A 1 
HETATM 9 C C9 PIM . . . D 3 56.655 53.05 17.586 1 40.9 ? C9 PIM 501 A 1 
HETATM 10 C C10 PIM . . . D 3 57.6 53.663 16.732 1 36.33 ? C10 PIM 501 A 1 
HETATM 11 C C11 PIM . . . D 3 58.933 53.708 17.201 1 34.49 ? C11 PIM 501 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           11 
#