data_2D1J # _model_server_result.job_id AuKsjP2Rcfw8QuebyU2KtQ _model_server_result.datetime_utc '2024-12-21 14:23:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2d1j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":261}' # _entry.id 2D1J # _exptl.entry_id 2D1J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2D1J _cell.length_a 57.078 _cell.length_b 73.122 _cell.length_c 79.949 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2D1J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 7 A CYS 22 1_555 A SG CYS 12 A CYS 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? disulf ? disulf2 A SG CYS 27 A CYS 42 1_555 A SG CYS 43 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? disulf ? disulf3 A SG CYS 108 A CYS 122 1_555 B SG CYS 48 B CYS 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? disulf ? disulf4 A SG CYS 156 A CYS 168 1_555 A SG CYS 170 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? disulf ? disulf5 A SG CYS 181 A CYS 191 1_555 A SG CYS 209 A CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf6 B SG CYS 5 B CYS 89 1_555 B SG CYS 16 B CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf7 B SG CYS 12 B CYS 96 1_555 B SG CYS 25 B CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? disulf ? disulf8 B SG CYS 27 B CYS 111 1_555 B SG CYS 40 B CYS 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc1 A OD1 ASP 56 A ASP 70 1_555 C CA CA . A CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc2 A O ASN 58 A ASN 72 1_555 C CA CA . A CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc3 A O GLN 61 A GLN 75 1_555 C CA CA . A CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc4 A OE2 GLU 66 A GLU 80 1_555 C CA CA . A CA 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc5 A O TYR 173 A TYR 185 1_555 D CA CA . A CA 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc6 A O ASP 174 A ASP 185 1_555 D CA CA . A CA 262 1_555 A ? ? ? ? ? ? ? ? ? ? ? 3.081 ? metalc ? metalc7 A O ARG 211 A ARG 222 1_555 D CA CA . A CA 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc8 A O LYS 214 A LYS 224 1_555 D CA CA . A CA 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc9 C CA CA . A CA 261 1_555 F O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc10 C CA CA . A CA 261 1_555 F O HOH . A HOH 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc11 D CA CA . A CA 262 1_555 F O HOH . A HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.187 ? metalc ? metalc12 D CA CA . A CA 262 1_555 F O HOH . A HOH 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2D1J _atom_sites.fract_transf_matrix[1][1] 0.01752 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013676 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012508 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 261 261 CA CA . D 3 CA A 1 262 262 CA CA . E 4 D01 A 1 700 700 D01 D01 . F 5 HOH A 1 301 301 HOH HOH . F 5 HOH A 2 302 302 HOH HOH . F 5 HOH A 3 303 303 HOH HOH . F 5 HOH A 4 304 304 HOH HOH . F 5 HOH A 5 305 305 HOH HOH . F 5 HOH A 6 306 306 HOH HOH . F 5 HOH A 7 308 308 HOH HOH . F 5 HOH A 8 309 309 HOH HOH . F 5 HOH A 9 310 310 HOH HOH . F 5 HOH A 10 311 311 HOH HOH . F 5 HOH A 11 312 312 HOH HOH . F 5 HOH A 12 313 313 HOH HOH . F 5 HOH A 13 314 314 HOH HOH . F 5 HOH A 14 315 315 HOH HOH . F 5 HOH A 15 316 316 HOH HOH . F 5 HOH A 16 317 317 HOH HOH . F 5 HOH A 17 318 318 HOH HOH . F 5 HOH A 18 319 319 HOH HOH . F 5 HOH A 19 320 320 HOH HOH . F 5 HOH A 20 321 321 HOH HOH . F 5 HOH A 21 322 322 HOH HOH . F 5 HOH A 22 323 323 HOH HOH . F 5 HOH A 23 325 325 HOH HOH . F 5 HOH A 24 326 326 HOH HOH . F 5 HOH A 25 327 327 HOH HOH . F 5 HOH A 26 328 328 HOH HOH . F 5 HOH A 27 330 330 HOH HOH . F 5 HOH A 28 331 331 HOH HOH . F 5 HOH A 29 332 332 HOH HOH . F 5 HOH A 30 334 334 HOH HOH . F 5 HOH A 31 335 335 HOH HOH . F 5 HOH A 32 336 336 HOH HOH . F 5 HOH A 33 337 337 HOH HOH . F 5 HOH A 34 339 339 HOH HOH . F 5 HOH A 35 340 340 HOH HOH . F 5 HOH A 36 341 341 HOH HOH . F 5 HOH A 37 342 342 HOH HOH . F 5 HOH A 38 344 344 HOH HOH . F 5 HOH A 39 345 345 HOH HOH . F 5 HOH A 40 346 346 HOH HOH . F 5 HOH A 41 347 347 HOH HOH . F 5 HOH A 42 348 348 HOH HOH . F 5 HOH A 43 350 350 HOH HOH . F 5 HOH A 44 351 351 HOH HOH . F 5 HOH A 45 353 353 HOH HOH . F 5 HOH A 46 354 354 HOH HOH . F 5 HOH A 47 355 355 HOH HOH . F 5 HOH A 48 356 356 HOH HOH . F 5 HOH A 49 357 357 HOH HOH . F 5 HOH A 50 358 358 HOH HOH . F 5 HOH A 51 359 359 HOH HOH . F 5 HOH A 52 360 360 HOH HOH . F 5 HOH A 53 361 361 HOH HOH . F 5 HOH A 54 362 362 HOH HOH . F 5 HOH A 55 363 363 HOH HOH . F 5 HOH A 56 364 364 HOH HOH . F 5 HOH A 57 366 366 HOH HOH . F 5 HOH A 58 367 367 HOH HOH . F 5 HOH A 59 368 368 HOH HOH . F 5 HOH A 60 369 369 HOH HOH . F 5 HOH A 61 370 370 HOH HOH . F 5 HOH A 62 371 371 HOH HOH . F 5 HOH A 63 374 374 HOH HOH . F 5 HOH A 64 375 375 HOH HOH . F 5 HOH A 65 376 376 HOH HOH . F 5 HOH A 66 377 377 HOH HOH . F 5 HOH A 67 380 380 HOH HOH . F 5 HOH A 68 381 381 HOH HOH . F 5 HOH A 69 383 383 HOH HOH . F 5 HOH A 70 384 384 HOH HOH . F 5 HOH A 71 385 385 HOH HOH . F 5 HOH A 72 387 387 HOH HOH . F 5 HOH A 73 388 388 HOH HOH . F 5 HOH A 74 390 390 HOH HOH . F 5 HOH A 75 391 391 HOH HOH . F 5 HOH A 76 393 393 HOH HOH . F 5 HOH A 77 395 395 HOH HOH . F 5 HOH A 78 397 397 HOH HOH . F 5 HOH A 79 398 398 HOH HOH . F 5 HOH A 80 399 399 HOH HOH . F 5 HOH A 81 400 400 HOH HOH . F 5 HOH A 82 402 402 HOH HOH . F 5 HOH A 83 404 404 HOH HOH . F 5 HOH A 84 405 405 HOH HOH . F 5 HOH A 85 406 406 HOH HOH . F 5 HOH A 86 500 500 HOH HOH . F 5 HOH A 87 501 501 HOH HOH . F 5 HOH A 88 504 504 HOH HOH . F 5 HOH A 89 505 505 HOH HOH . F 5 HOH A 90 506 506 HOH HOH . F 5 HOH A 91 508 508 HOH HOH . G 5 HOH B 1 300 300 HOH HOH . G 5 HOH B 2 307 307 HOH HOH . G 5 HOH B 3 324 324 HOH HOH . G 5 HOH B 4 333 333 HOH HOH . G 5 HOH B 5 338 338 HOH HOH . G 5 HOH B 6 343 343 HOH HOH . G 5 HOH B 7 349 349 HOH HOH . G 5 HOH B 8 352 352 HOH HOH . G 5 HOH B 9 365 365 HOH HOH . G 5 HOH B 10 373 373 HOH HOH . G 5 HOH B 11 386 386 HOH HOH . G 5 HOH B 12 394 394 HOH HOH . G 5 HOH B 13 396 396 HOH HOH . G 5 HOH B 14 401 401 HOH HOH . G 5 HOH B 15 403 403 HOH HOH . G 5 HOH B 16 408 408 HOH HOH . G 5 HOH B 17 409 409 HOH HOH . G 5 HOH B 18 502 502 HOH HOH . G 5 HOH B 19 503 503 HOH HOH . G 5 HOH B 20 507 507 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 13.335 _atom_site.Cartn_y 31.727 _atom_site.Cartn_z 30.084 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 49.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 261 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #